3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01446

Details:

PFam ID : PF01446

PFam Domain Description : Replication protein

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 206

Average sequence length: 178.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01446	C7NEB7_LEPBD_72_248	79.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01446	Q7X190_9BACT_1_129	100

Sequence based PCA Plot of the family - PF01446 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=192 Length=11
Motif2 Start=89 Length=8
Motif3 Start=17 Length=8
Motif4 Start=156 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay