3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05691

Details:

PFam ID : PF05691

PFam Domain Description : Raffinose synthase or seed inhibition protein Sip1

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 272

Average sequence length: 349.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05691	E4VUL7_BACFR_275_661	91.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05691	B6XVA1_9BIFI_29_100	100

Sequence based PCA Plot of the family - PF05691 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=193 Length=8
Motif2 Start=525 Length=11
Motif3 Start=133 Length=11
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay