3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00075

Details:

PFam ID : PF00075

PFam Domain Description : RNase H

Number of Sequence in 50% Dataset : 426

Number of Sequence in Full Dataset : 2320

Average sequence length: 131.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00075	B6HJV5_PENCW_125_296	91.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00075	A8Y424_CAEBR_317_441	100

Sequence based PCA Plot of the family - PF00075 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=71 Length=11
Motif2 Start=113 Length=11
Motif3 Start=5 Length=11
Motif4 Start=44 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay