3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00833

Details:

PFam ID : PF00833

PFam Domain Description : Ribosomal S17

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 225

Average sequence length: 96.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00833	B6UFC3_MAIZE_1_52	43.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00833	E9NST6_HEV_762_815	99.5

Sequence based PCA Plot of the family - PF00833 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=20 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay