3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06479

Details:

PFam ID : PF06479

PFam Domain Description : Ribonuclease 2-5A

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 165

Average sequence length: 124.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06479	A2DRF9_TRIVA_582_693	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06479	IRLD_DICDI_1357_1501	98.7

Sequence based PCA Plot of the family - PF06479 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=39 Length=8
Motif3 Start=76 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay