3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05104

Details:

PFam ID : PF05104

PFam Domain Description : Ribosome receptor lysine/proline rich region

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 17

Average sequence length: 110.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05104	Q4V968_DANRE_31_80	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05104	Q6TGU8_DANRE_33_190	100

Sequence based PCA Plot of the family - PF05104 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay