3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04983

Details:

PFam ID : PF04983

PFam Domain Description : RNA polymerase Rpb1, domain 3

Number of Sequence in 50% Dataset : 229

Number of Sequence in Full Dataset : 2481

Average sequence length: 147.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04983	E9NPW0_9CHLO_663_760	73.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04983	RPOA1_HALMO_1_74	100

Sequence based PCA Plot of the family - PF04983 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=58 Length=11
Motif3 Start=76 Length=8
Motif4 Start=237 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay