3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09445

Details:

PFam ID : PF09445

PFam Domain Description : RNA cap guanine-N2 methyltransferase

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 212

Average sequence length: 156.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09445	F0SQZ5_PLABD_109_222	97.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09445	Q6CFQ5_YARLI_241_456	100

Sequence based PCA Plot of the family - PF09445 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=5 Length=8
Motif3 Start=177 Length=8
Motif4 Start=228 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay