3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11073

Details:

PFam ID : PF11073

PFam Domain Description : Rift valley fever virus non structural protein (NSs) like

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 33

Average sequence length: 223.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11073	A7KCK5_9VIRU_8_247	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11073	A7KCK5_9VIRU_8_247	100

Sequence based PCA Plot of the family - PF11073 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=109 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay