3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14239

Details:

PFam ID : PF14239

PFam Domain Description : RRXRR protein

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 160

Average sequence length: 162.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14239	B4VQ07_9CYAN_4_139	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14239	D9QU93_ACEAZ_6_186	100

Sequence based PCA Plot of the family - PF14239 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=30
Motif2 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay