3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04055

Details:

PFam ID : PF04055

PFam Domain Description : Radical SAM superfamily

Number of Sequence in 50% Dataset : 2622

Number of Sequence in Full Dataset : 22434

Average sequence length: 168.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04055	D5CUP0_SIDLE_118_328	96.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04055	D7G123_ECTSI_321_442	97.3

Sequence based PCA Plot of the family - PF04055 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=144 Length=17
Motif2 Start=236 Length=11
Motif3 Start=194 Length=11
Motif4 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay