3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01159

Details:

PFam ID : PF01159

PFam Domain Description : Ribosomal protein L6e

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 249

Average sequence length: 100.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01159	A1XED0_BOVIN_1_32	8.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01159	A4S335_OSTLU_99_169	99.5

Sequence based PCA Plot of the family - PF01159 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay