3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08615

Details:

PFam ID : PF08615

PFam Domain Description : Ribonuclease H2 non-catalytic subunit (Ylr154p-like)

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 154

Average sequence length: 129.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08615	C5M135_9ALVE_7_95	92.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08615	D3BIN7_POLPA_35_178	100

Sequence based PCA Plot of the family - PF08615 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=47 Length=8
Motif3 Start=100 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay