3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08343

Details:

PFam ID : PF08343

PFam Domain Description : Ribonucleotide reductase N-terminal

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 265

Average sequence length: 79.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08343	C3RML6_9FIRM_171_229	30

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08343	Q8EWW4_MYCPE_20_101	100

Sequence based PCA Plot of the family - PF08343 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=22 Length=8
Motif2 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay