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Paste the query sequence in fasta format ( view example | insert example| Example run )


Paste Motifs Below
(In order which they appear in the query sequence)
( Motif can be in SCANMOT pattern or PROSITE pattern )
view example | insert example (scanmot or prosite)

Order Motifs
I
II
III
IV
V
VI
VII
VIII
IX
X

  • Click here to access a database of structural motifs for protein superfamilies.


    • Choose the database to search for motifs


    OR
    Create Custom Database by Pasting the sequences below
    (Note: The motifs will be searched only in these sequences)

    Paste the sequences in fasta format


    OR Upload Your file(database)-Sequences should be in fasta format



    Wish to go for similar residue substitution?
    eg: [F]=[FYW], [V]=[VIL], [D]=[DE], [H]=[HKR], [N]=[NQ], [C]=[CST], A=[AG]

    Yes
    No

    Choose Relaxation filter for motif spacer length between query and hit
    (click here for details)

    %

    Choose the minimum number of motifs that should be present in the hits

    Atleast    Motifs


    Wish to go for PSI-BLAST search of your query and
    mapping of the motifs by scanmot?
    Click here


    ############### PROSITE| PROFILE| PRINTS| FINDMOTIF| PFAM| BLOCKS| PDB| SCOP ###############

    Contacts:
    Sowdhamini.R -mini@ncbs.res.in
    Saikat Chakrabarti -saikat@ncbs.res.in
    Pugalenthi.G -pugal(at)ncbs.res.in
    Prem Anand. A -prem@ncbs.res.in
    Nitin Bhardwaj -nitinb@che.iitb.ac.in