################################
################################
..################################################################################################

Paste the query sequence in fasta format ( view example | insert example )



Paste Motifs Below
(In order which they appear in the query sequence)
( Motif can be in SCANMOT pattern or PROSITE pattern )
view example | insert example (scanmot or prosite)

Order Motifs
I
II
III
IV
V
VI
VII
VIII
IX
X

  • Click here to access a database of structural motifs for protein superfamilies.

    • Upload PSI-BLAST output

    Note: The motifs will be searched only in the sequences present in PSI-BLAST output


    Select the e-value cut-off till which you wish to scan the sequences



    Select the minimum percentage length cut-off of your hits
    with relevance to the query



    Wish to go for similar residue substitution?
    eg: [F]=[FYW], [V]=[VIL], [D]=[DE], [H]=[HKR], [N]=[NQ], [C]=[CST], A=[AG]

    Yes
    No



    Choose Relaxation filter for motif spacer length between query and hit
    (click here for details)

    %

    Choose the minimum number of motifs that should be present in the hits

    Atleast     Motifs


    Wish to run PSI-BLAST and then map the motifs to the
    PSI-BLAST output?
    Click here

    ############### PROSITE| PROFILE| PRINTS| FINDMOTIF| PFAM| BLOCKS| PDB| SCOP ###############

    Contacts:
    Sowdhamini.R -mini@ncbs.res.in
    Saikat Chakrabarti -saikat@ncbs.res.in
    Pugal.G -pugal (at) ncbs.res.in
    Prem Anand. A -prem@ncbs.res.in
    Nitin Bhardwaj -nitinb@che.iitb.ac.in