PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1jr8a-  (   7 )                ddkvkkevgraswkyFHtlLArfpdePtpeerekLhtf
d3gwla1  ( 101 )                    mlhwgpkywrsLHlyAIffsdaPswkekyeAiqw
d3tk0a1  (  81 )    mrtqqrdtfredcppdreelgrhswavlHtlAAyypdlPtpeqqqdmaqf
                                       aaaaaaaaaaaaaa       aaaaaaaaaa

                             60        70        80        90        100 
d1jr8a-  (  45 )    IglyAelypçgeçsyhfvkliekypVqtssrtaAAmWGÇhIhnkvneylk
d3gwla1  ( 135 )    IlnfIeslpçtrçqhhAfsyltknpLtLnnsedFqyWTfafhnnvnnrln
d3tk0a1  ( 133 )    IhlfSkfypseecAedlrkrlarnhpdTrtraaFtqwLÇhLhnevnrklg
                    aaaaaaa   aaaaaaaaaaaaa       aaaaaaaaaaaaaaaaaa  

                             110       120 
d1jr8a-  (  95 )    kdiydçatIledydçgç      
d3gwla1  ( 185 )    kkiiswseYkniyeqsil     
d3tk0a1  ( 183 )    kpdfdçskvderwrdgwkdgscd
                            aaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1jr8a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1jr8a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thiol oxidase Erv2p	FAD-dependent thiol oxidase	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view
d3gwla1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3gwla1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	African swine fever virus ba71v [TaxId: 10498]	view
d3tk0a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3tk0a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Augmenter of liver regeneration	FAD-dependent thiol oxidase	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	L	H	W	G	P	K	Y	W	R	S	L	H	L	Y	A	I	F	F	S	D	A	P	S	W	K	E	K	Y	E	A	I	Q	W	I	L	N	F	I	E	S	L	P	C	T	R	C	Q	H	H	A	F	S	Y	L	T	K	N	P	L	T	L	N	N	S	E	D	F	Q	Y	W	T	F	A	F	H	N	N	V	N	N	R	L	N	K	K	I	I	S	W	S	E	Y	K	N	I	Y	E	Q	S	I	L	-	-	-	-	-
M	R	T	Q	Q	R	D	T	F	R	E	D	C	P	P	D	R	E	E	L	G	R	H	S	W	A	V	L	H	T	L	A	A	Y	Y	P	D	L	P	T	P	E	Q	Q	Q	D	M	A	Q	F	I	H	L	F	S	K	F	Y	P	S	E	E	C	A	E	D	L	R	K	R	L	A	R	N	H	P	D	T	R	T	R	A	A	F	T	Q	W	L	C	H	L	H	N	E	V	N	R	K	L	G	K	P	D	F	D	C	S	K	V	D	E	R	W	R	D	G	W	K	D	G	S	C	D

Member	Chain	UniProtKB	GO term
d1jr8a_	A	Q12284	GO:0016971
d1jr8a_	A	Q12284	GO:0016972

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	L	H	W	G	P	K	Y	W	R	S	L	H	L	Y	A	I	F	F	S	D	A	P	S	W	K	E	K	Y	E	A	I	Q	W	I	L	N	F	I	E	S	L	P	C	T	R	C	Q	H	H	A	F	S	Y	L	T	K	N	P	L	T	L	N	N	S	E	D	F	Q	Y	W	T	F	A	F	H	N	N	V	N	N	R	L	N	K	K	I	I	S	W	S	E	Y	K	N	I	Y	E	Q	S	I	L	-	-	-	-	-
M	R	T	Q	Q	R	D	T	F	R	E	D	C	P	P	D	R	E	E	L	G	R	H	S	W	A	V	L	H	T	L	A	A	Y	Y	P	D	L	P	T	P	E	Q	Q	Q	D	M	A	Q	F	I	H	L	F	S	K	F	Y	P	S	E	E	C	A	E	D	L	R	K	R	L	A	R	N	H	P	D	T	R	T	R	A	A	F	T	Q	W	L	C	H	L	H	N	E	V	N	R	K	L	G	K	P	D	F	D	C	S	K	V	D	E	R	W	R	D	G	W	K	D	G	S	C	D

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	L	H	W	G	P	K	Y	W	R	S	L	H	L	Y	A	I	F	F	S	D	A	P	S	W	K	E	K	Y	E	A	I	Q	W	I	L	N	F	I	E	S	L	P	C	T	R	C	Q	H	H	A	F	S	Y	L	T	K	N	P	L	T	L	N	N	S	E	D	F	Q	Y	W	T	F	A	F	H	N	N	V	N	N	R	L	N	K	K	I	I	S	W	S	E	Y	K	N	I	Y	E	Q	S	I	L	-	-	-	-	-
M	R	T	Q	Q	R	D	T	F	R	E	D	C	P	P	D	R	E	E	L	G	R	H	S	W	A	V	L	H	T	L	A	A	Y	Y	P	D	L	P	T	P	E	Q	Q	Q	D	M	A	Q	F	I	H	L	F	S	K	F	Y	P	S	E	E	C	A	E	D	L	R	K	R	L	A	R	N	H	P	D	T	R	T	R	A	A	F	T	Q	W	L	C	H	L	H	N	E	V	N	R	K	L	G	K	P	D	F	D	C	S	K	V	D	E	R	W	R	D	G	W	K	D	G	S	C	D

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	L	H	W	G	P	K	Y	W	R	S	L	H	L	Y	A	I	F	F	S	D	A	P	S	W	K	E	K	Y	E	A	I	Q	W	I	L	N	F	I	E	S	L	P	C	T	R	C	Q	H	H	A	F	S	Y	L	T	K	N	P	L	T	L	N	N	S	E	D	F	Q	Y	W	T	F	A	F	H	N	N	V	N	N	R	L	N	K	K	I	I	S	W	S	E	Y	K	N	I	Y	E	Q	S	I	L	-	-	-	-	-
M	R	T	Q	Q	R	D	T	F	R	E	D	C	P	P	D	R	E	E	L	G	R	H	S	W	A	V	L	H	T	L	A	A	Y	Y	P	D	L	P	T	P	E	Q	Q	Q	D	M	A	Q	F	I	H	L	F	S	K	F	Y	P	S	E	E	C	A	E	D	L	R	K	R	L	A	R	N	H	P	D	T	R	T	R	A	A	F	T	Q	W	L	C	H	L	H	N	E	V	N	R	K	L	G	K	P	D	F	D	C	S	K	V	D	E	R	W	R	D	G	W	K	D	G	S	C	D