SCOP ID	Superfamily	# of Members	Fold	Class
46458	Globin-like	57	Globin-like	All alpha proteins
46548	alpha-helical ferredoxin	5	Globin-like	All alpha proteins
46557	GreA transcript cleavage protein, N-terminal domain	3	Long alpha-hairpin	All alpha proteins
46561	Ribosomal protein L29 (L29p)	3	Long alpha-hairpin	All alpha proteins
46565	Chaperone J-domain	10	Long alpha-hairpin	All alpha proteins
46575	DNA polymerase III theta subunit-like	1	DNA polymerase III theta subunit-like	All alpha proteins
46579	Prefoldin	2	Long alpha-hairpin	All alpha proteins
46585	HR1 repeat	2	Long alpha-hairpin	All alpha proteins
46589	tRNA-binding arm	5	Long alpha-hairpin	All alpha proteins
46596	Eukaryotic DNA topoisomerase I, dispensable insert domain	1	Long alpha-hairpin	All alpha proteins
46600	C-terminal UvrC-binding domain of UvrB	1	Long alpha-hairpin	All alpha proteins
46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain	9	Long alpha-hairpin	All alpha proteins
46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain	1	DNA/RNA-binding 3-helical bundle	All alpha proteins
46774	ARID-like	5	DNA/RNA-binding 3-helical bundle	All alpha proteins
46894	C-terminal effector domain of the bipartite response regulators	30	DNA/RNA-binding 3-helical bundle	All alpha proteins
46906	Ribosomal protein L11, C-terminal domain	2	DNA/RNA-binding 3-helical bundle	All alpha proteins
46911	Ribosomal protein S18	1	DNA/RNA-binding 3-helical bundle	All alpha proteins
46915	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3	2	DNA/RNA-binding 3-helical bundle	All alpha proteins
46919	Retroviral integrase, N-terminal Zn binding domain	2	DNA/RNA-binding 3-helical bundle	All alpha proteins
46924	RNA polymerase subunit RPB10	1	DNA/RNA-binding 3-helical bundle	All alpha proteins
46929	DNA helicase RuvA subunit, C-terminal domain	3	RuvA C-terminal domain-like	All alpha proteins
46934	UBA-like	34	RuvA C-terminal domain-like	All alpha proteins
46938	CRAL/TRIO N-terminal domain	3	RuvA C-terminal domain-like	All alpha proteins
46942	Elongation factor TFIIS domain 2	1	RuvA C-terminal domain-like	All alpha proteins
46946	S13-like H2TH domain	6	S13-like H2TH domain	All alpha proteins
46950	Double-stranded DNA-binding domain	2	RuvA C-terminal domain-like	All alpha proteins
46955	Putative DNA-binding domain	18	Putative DNA-binding domain	All alpha proteins
46966	Spectrin repeat	11	Spectrin repeat-like	All alpha proteins
46973	Enzyme IIa from lactose specific PTS, IIa-lac	2	Spectrin repeat-like	All alpha proteins
46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain	6	Spectrin repeat-like	All alpha proteins
46984	Smac/diablo	1	Spectrin repeat-like	All alpha proteins
46988	Tubulin chaperone cofactor A	2	Spectrin repeat-like	All alpha proteins
46992	Ribosomal protein S20	2	Spectrin repeat-like	All alpha proteins
46997	Bacterial immunoglobulin/albumin-binding domains	4	immunoglobulin/albumin-binding domain-like	All alpha proteins
47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	2	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	All alpha proteins
47014	Protozoan pheromone proteins	4	Protozoan pheromone-like	All alpha proteins
47027	Acyl-CoA binding protein	3	Acyl-CoA binding protein-like	All alpha proteins
47031	Second domain of FERM	4	Acyl-CoA binding protein-like	All alpha proteins
47040	Kix domain of CBP (creb binding protein)	1	Kix domain of CBP (creb binding protein)	All alpha proteins
47045	RAP domain-like	2	RAP domain-like	All alpha proteins
47050	VHP, Villin headpiece domain	1	VHP, Villin headpiece domain	All alpha proteins
47055	TAF(II)230 TBP-binding fragment	1	TAF(II)230 TBP-binding fragment	All alpha proteins
47060	S15/NS1 RNA-binding domain	4	S15/NS1 RNA-binding domain	All alpha proteins
47072	Cysteine alpha-hairpin motif	2	Cysteine alpha-hairpin motif	All alpha proteins
47077	T4 endonuclease V	1	T4 endonuclease V	All alpha proteins
47082	Fertilization protein	2	Fertilization protein	All alpha proteins
47090	PGBD-like	5	PGBD-like	All alpha proteins
47095	HMG-box	16	HMG-box	All alpha proteins
47113	Histone-fold	23	Histone-fold	All alpha proteins
47144	HSC20 (HSCB), C-terminal oligomerisation domain	1	Open three-helical up-and-down bundle	All alpha proteins
47148	Diol dehydratase, gamma subunit	1	Open three-helical up-and-down bundle	All alpha proteins
47152	Methane monooxygenase hydrolase, gamma subunit	1	Open three-helical up-and-down bundle	All alpha proteins
47157	Mitochondrial import receptor subunit Tom20	1	Open three-helical up-and-down bundle	All alpha proteins
47162	Apolipoprotein	1	Four-helical up-and-down bundle	All alpha proteins
47170	Aspartate receptor, ligand-binding domain	2	Four-helical up-and-down bundle	All alpha proteins
47175	Cytochromes	9	Four-helical up-and-down bundle	All alpha proteins
47188	Hemerythrin-like	1	Four-helical up-and-down bundle	All alpha proteins
47195	TMV-like viral coat proteins	2	Four-helical up-and-down bundle	All alpha proteins
47203	Acyl-CoA dehydrogenase C-terminal domain-like	19	Bromodomain-like	All alpha proteins
47212	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)	1	Four-helical up-and-down bundle	All alpha proteins
47220	alpha-catenin/vinculin-like	12	Four-helical up-and-down bundle	All alpha proteins
47226	Histidine-containing phosphotransfer domain, HPT domain	9	Four-helical up-and-down bundle	All alpha proteins
47233	Bacterial GAP domain	3	Four-helical up-and-down bundle	All alpha proteins
47266	4-helical cytokines	33	4-helical cytokines	All alpha proteins
47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	15	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	All alpha proteins
47336	ACP-like	16	Acyl carrier protein-like	All alpha proteins
47345	Colicin E immunity proteins	1	Acyl carrier protein-like	All alpha proteins
47353	Retrovirus capsid dimerization domain-like	7	Acyl carrier protein-like	All alpha proteins
47364	Domain of the SRP/SRP receptor G-proteins	5	Four-helical up-and-down bundle	All alpha proteins
47370	Bromodomain	31	Bromodomain-like	All alpha proteins
47380	ROP protein	1	ROP-like	All alpha proteins
47384	Homodimeric domain of signal transducing histidine kinase	3	ROP-like	All alpha proteins
47391	Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit	2	Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit	All alpha proteins
47396	Transcription factor IIA (TFIIA), alpha-helical domain	3	Transcription factor IIA (TFIIA), alpha-helical domain	All alpha proteins
47401	Ectatomin subunits	1	Ectatomin subunits	All alpha proteins
47406	SinR repressor dimerisation domain-like	2	Dimerisation interlock	All alpha proteins
47413	lambda repressor-like DNA-binding domains	37	lambda repressor-like DNA-binding domains	All alpha proteins
47446	Signal peptide-binding domain	4	Signal peptide-binding domain	All alpha proteins
47454	A DNA-binding domain in eukaryotic transcription factors	2	A DNA-binding domain in eukaryotic transcription factors	All alpha proteins
47459	HLH, helix-loop-helix DNA-binding domain	7	HLH-like	All alpha proteins
47565	Insect pheromone/odorant-binding proteins	13	EF Hand-like	All alpha proteins
47571	Cloroperoxidase	2	EF Hand-like	All alpha proteins
47576	Calponin-homology domain, CH-domain	17	CH domain-like	All alpha proteins
47587	Domain of poly(ADP-ribose) polymerase	3	Domain of poly(ADP-ribose) polymerase	All alpha proteins
47592	SWIB/MDM2 domain	3	SWIB/MDM2 domain	All alpha proteins
47598	Ribbon-helix-helix	17	Ribbon-helix-helix	All alpha proteins
47616	GST C-terminal domain-like	63	GST C-terminal domain-like	All alpha proteins
47644	Methionine synthase domain	1	Methionine synthase domain-like	All alpha proteins
47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain	4	Methionine synthase domain-like	All alpha proteins
47655	STAT	2	STAT-like	All alpha proteins
47661	t-snare proteins	5	STAT-like	All alpha proteins
47668	N-terminal domain of cbl (N-cbl)	2	N-cbl like	All alpha proteins
47672	Transferrin receptor-like dimerisation domain	2	N-cbl like	All alpha proteins
47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	2	N-cbl like	All alpha proteins
47681	C-terminal domain of B transposition protein	1	C-terminal domain of B transposition protein	All alpha proteins
47686	Anaphylotoxins (complement system)	2	Anaphylotoxins (complement system)	All alpha proteins
47694	Cytochrome c oxidase subunit h	1	Cytochrome c oxidase subunit h	All alpha proteins
47719	p53 tetramerization domain	2	p53 tetramerization domain	All alpha proteins
47724	Domain of early E2A DNA-binding protein, ADDBP	1	Domain of early E2A DNA-binding protein, ADDBP	All alpha proteins
47729	IHF-like DNA-binding proteins	9	IHF-like DNA-binding proteins	All alpha proteins
47741	CO dehydrogenase ISP C-domain like	4	CO dehydrogenase ISP C-domain like	All alpha proteins
47752	Protein HNS-dependent expression A; HdeA	1	Protein HNS-dependent expression A; HdeA	All alpha proteins
47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain	1	Chemotaxis receptor methyltransferase CheR, N-terminal domain	All alpha proteins
47762	PAH2 domain	2	PAH2 domain	All alpha proteins
47769	SAM/Pointed domain	29	SAM domain-like	All alpha proteins
47781	RuvA domain 2-like	15	SAM domain-like	All alpha proteins
47789	C-terminal domain of RNA polymerase alpha subunit	3	SAM domain-like	All alpha proteins
47794	Rad51 N-terminal domain-like	5	SAM domain-like	All alpha proteins
47798	Barrier-to-autointegration factor, BAF	1	SAM domain-like	All alpha proteins
47802	DNA polymerase beta, N-terminal domain-like	4	SAM domain-like	All alpha proteins
47807	5\' to 3\' exonuclease, C-terminal subdomain	5	SAM domain-like	All alpha proteins
47819	HRDC-like	11	SAM domain-like	All alpha proteins
47823	lambda integrase-like, N-terminal domain	3	SAM domain-like	All alpha proteins
47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain	1	SAM domain-like	All alpha proteins
47836	Retroviral matrix proteins	6	Retroviral matrix proteins	All alpha proteins
47852	Hepatitis B viral capsid (hbcag)	2	Hepatitis B viral capsid (hbcag)	All alpha proteins
47857	Apolipophorin-III	2	Apolipophorin-III	All alpha proteins
47862	Saposin	9	Saposin-like	All alpha proteins
47869	Bacteriocin AS-48	1	Saposin-like	All alpha proteins
47874	Annexin	3	Annexin	All alpha proteins
47895	Transducin (alpha subunit), insertion domain	3	Transducin (alpha subunit), insertion domain	All alpha proteins
47912	Wiscott-Aldrich syndrome protein, WASP, C-terminal domain	1	Wiscott-Aldrich syndrome protein, WASP, C-terminal domain	All alpha proteins
47917	C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases	7	Left-handed superhelix	All alpha proteins
47923	Ypt/Rab-GAP domain of gyp1p	2	Left-handed superhelix	All alpha proteins
47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase	1	ATPD N-terminal domain-like	All alpha proteins
47933	ERP29 C domain-like	2	ERP29 C domain-like	All alpha proteins
47938	Functional domain of the splicing factor Prp18	1	Functional domain of the splicing factor Prp18	All alpha proteins
47943	Retrovirus capsid protein, N-terminal core domain	8	Retrovirus capsid protein, N-terminal core domain	All alpha proteins
47954	Cyclin-like	25	Cyclin-like	All alpha proteins
47973	Ribosomal protein S7	2	Ribosomal protein S7	All alpha proteins
47979	Iron-dependent repressor protein, dimerization domain	2	Iron-dependent repressor protein, dimerization domain	All alpha proteins
47986	DEATH domain	25	DEATH domain	All alpha proteins
48008	GntR ligand-binding domain-like	2	GntR ligand-binding domain-like	All alpha proteins
48013	NusB-like	5	NusB-like	All alpha proteins
48019	post-AAA+ oligomerization domain-like	13	post-AAA+ oligomerization domain-like	All alpha proteins
48024	N-terminal domain of DnaB helicase	1	N-terminal domain of DnaB helicase	All alpha proteins
48029	FliG	2	alpha-alpha superhelix	All alpha proteins
48034	Guanido kinase N-terminal domain	2	Guanido kinase N-terminal domain	All alpha proteins
48045	Scaffolding protein gpD of bacteriophage procapsid	1	Scaffolding protein gpD of bacteriophage procapsid	All alpha proteins
48050	Hemocyanin, N-terminal domain	2	Hemocyanin, N-terminal domain	All alpha proteins
48056	Di-copper centre-containing domain	5	Di-copper centre-containing domain	All alpha proteins
48065	DBL homology domain (DH-domain)	10	DBL homology domain (DH-domain)	All alpha proteins
48076	LigA subunit of an aromatic-ring-opening dioxygenase LigAB	1	LigA subunit of an aromatic-ring-opening dioxygenase LigAB	All alpha proteins
48081	Methyl-coenzyme M reductase alpha and beta chain C-terminal domain	2	Methyl-coenzyme M reductase alpha and beta chain C-terminal domain	All alpha proteins
48092	Transcription factor STAT-4 N-domain	1	Transcription factor STAT-4 N-domain	All alpha proteins
48097	Regulator of G-protein signaling, RGS	8	Regulator of G-protein signaling, RGS	All alpha proteins
48108	Carbamoyl phosphate synthetase, large subunit connection domain	1	Carbamoyl phosphate synthetase, large subunit connection domain	All alpha proteins
48140	Ribosomal protein L19 (L19e)	1	Ribosomal protein L19 (L19e)	All alpha proteins
48145	Influenza virus matrix protein M1	1	Influenza virus matrix protein M1	All alpha proteins
48150	DNA-glycosylase	11	DNA-glycosylase	All alpha proteins
48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases	9	An anticodon-binding domain of class I aminoacyl-tRNA synthetases	All alpha proteins
48168	R1 subunit of ribonucleotide reductase, N-terminal domain	2	R1 subunit of ribonucleotide reductase, N-terminal domain	All alpha proteins
48173	Cryptochrome/photolyase FAD-binding domain	5	Cryptochrome/photolyase FAD-binding domain	All alpha proteins
48201	Uteroglobin-like	3	Uteroglobin-like	All alpha proteins
48225	Seven-hairpin glycosidases	4	alpha/alpha toroid	All alpha proteins
48230	Chondroitin AC/alginate lyase	6	alpha/alpha toroid	All alpha proteins
48256	Citrate synthase	6	Citrate synthase	All alpha proteins
48264	Cytochrome P450	73	Cytochrome P450	All alpha proteins
48295	TrpR-like	4	DNA/RNA-binding 3-helical bundle	All alpha proteins
48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	2	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	All alpha proteins
48305	Class II MHC-associated invariant chain ectoplasmic trimerization domain	1	Class II MHC-associated invariant chain ectoplasmic trimerization domain	All alpha proteins
48310	Aldehyde ferredoxin oxidoreductase, C-terminal domains	2	Aldehyde ferredoxin oxidoreductase, C-terminal domains	All alpha proteins
48317	Acid phosphatase/Vanadium-dependent haloperoxidase	4	Acid phosphatase/Vanadium-dependent haloperoxidase	All alpha proteins
48334	DNA repair protein MutS, domain III	2	DNA repair protein MutS, domain III	All alpha proteins
48340	Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	2	Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	All alpha proteins
48345	A virus capsid protein alpha-helical domain	3	A virus capsid protein alpha-helical domain	All alpha proteins
48350	GTPase activation domain, GAP	13	GTPase activation domain, GAP	All alpha proteins
48366	Ras GEF	1	Ras GEF	All alpha proteins
48425	Sec7 domain	3	alpha-alpha superhelix	All alpha proteins
48431	Lipovitellin-phosvitin complex, superhelical domain	1	alpha-alpha superhelix	All alpha proteins
48435	Bacterial muramidases	1	alpha-alpha superhelix	All alpha proteins
48439	Protein prenylyltransferase	5	alpha-alpha superhelix	All alpha proteins
48445	14-3-3 protein	3	alpha-alpha superhelix	All alpha proteins
48464	ENTH/VHS domain	11	alpha-alpha superhelix	All alpha proteins
48479	Cytochrome c oxidase subunit E	2	alpha-alpha superhelix	All alpha proteins
48484	Lipoxigenase	2	Lipoxigenase	All alpha proteins
48493	gene 59 helicase assembly protein	1	gene 59 helicase assembly protein	All alpha proteins
48498	Tetracyclin repressor-like, C-terminal domain	34	Tetracyclin repressor-like, C-terminal domain	All alpha proteins
48508	Nuclear receptor ligand-binding domain	20	Nuclear receptor ligand-binding domain	All alpha proteins
48537	Phospholipase C/P1 nuclease	4	Phospholipase C/P1 nuclease	All alpha proteins
48552	Serum albumin-like	6	Serum albumin-like	All alpha proteins
48576	Terpenoid synthases	30	Terpenoid synthases	All alpha proteins
48592	GroEL equatorial domain-like	2	GroEL equatorial domain-like	All alpha proteins
48600	Chorismate mutase II	10	Chorismate mutase II	All alpha proteins
48608	Peridinin-chlorophyll protein	1	Peridinin-chlorophyll protein	All alpha proteins
48613	Heme oxygenase-like	17	Heme oxygenase-like	All alpha proteins
48619	Phospholipase A2, PLA2	5	Phospholipase A2, PLA2	All alpha proteins
48647	Fungal elicitin	1	Fungal elicitin	All alpha proteins
48652	Tetraspanin	1	Tetraspanin	All alpha proteins
48657	FinO-like	2	FinO-like	All alpha proteins
48662	Ribosomal protein L39e	1	Non-globular all-alpha subunits of globular proteins	All alpha proteins
48666	Methanol dehydrogenase subunit	1	Non-globular all-alpha subunits of globular proteins	All alpha proteins
48670	Transducin (heterotrimeric G protein), gamma chain	2	Non-globular all-alpha subunits of globular proteins	All alpha proteins
48674	Fe-only hydrogenase smaller subunit	1	Non-globular all-alpha subunits of globular proteins	All alpha proteins
48678	Moesin tail domain	1	Non-globular all-alpha subunits of globular proteins	All alpha proteins
48686	Proteinase A inhibitor IA3	1	Non-globular all-alpha subunits of globular proteins	All alpha proteins
49265	Fibronectin type III	118	Immunoglobulin-like beta-sandwich	All beta proteins
49299	PKD domain	3	Immunoglobulin-like beta-sandwich	All beta proteins
49303	beta-Galactosidase/glucuronidase domain	18	Immunoglobulin-like beta-sandwich	All beta proteins
49309	Transglutaminase, two C-terminal domains	8	Immunoglobulin-like beta-sandwich	All beta proteins
49313	Cadherin-like	25	Immunoglobulin-like beta-sandwich	All beta proteins
49319	Actinoxanthin-like	2	Immunoglobulin-like beta-sandwich	All beta proteins
49329	Cu,Zn superoxide dismutase-like	6	Immunoglobulin-like beta-sandwich	All beta proteins
49344	CBD9-like	5	Immunoglobulin-like beta-sandwich	All beta proteins
49348	Clathrin adaptor appendage domain	5	Immunoglobulin-like beta-sandwich	All beta proteins
49354	PapD-like	6	Immunoglobulin-like beta-sandwich	All beta proteins
49363	Purple acid phosphatase, N-terminal domain	1	Immunoglobulin-like beta-sandwich	All beta proteins
49367	Superoxide reductase-like	2	Immunoglobulin-like beta-sandwich	All beta proteins
49373	Invasin/intimin cell-adhesion fragments	7	Immunoglobulin-like beta-sandwich	All beta proteins
49380	Diphtheria toxin, C-terminal domain	1	Common fold of diphtheria toxin/transcription factors/cytochrome f	All beta proteins
49384	Carbohydrate-binding domain	22	Common fold of diphtheria toxin/transcription factors/cytochrome f	All beta proteins
49401	Bacterial adhesins	22	Common fold of diphtheria toxin/transcription factors/cytochrome f	All beta proteins
49417	p53-like transcription factors	11	Common fold of diphtheria toxin/transcription factors/cytochrome f	All beta proteins
49441	Cytochrome f, large domain	1	Common fold of diphtheria toxin/transcription factors/cytochrome f	All beta proteins
49447	Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	2	Common fold of diphtheria toxin/transcription factors/cytochrome f	All beta proteins
49452	Starch-binding domain-like	8	Prealbumin-like	All beta proteins
49464	Carboxypeptidase regulatory domain-like	3	Prealbumin-like	All beta proteins
49468	VHL	1	Prealbumin-like	All beta proteins
49472	Transthyretin (synonym: prealbumin)	5	Prealbumin-like	All beta proteins
49478	Cna protein B-type domain	7	Prealbumin-like	All beta proteins
49482	Aromatic compound dioxygenase	4	Prealbumin-like	All beta proteins
49493	HSP40/DnaJ peptide-binding domain	7	HSP40/DnaJ peptide-binding domain	All beta proteins
49498	alpha-Amylase inhibitor tendamistat	1	alpha-Amylase inhibitor tendamistat	All beta proteins
49562	C2 domain (Calcium/lipid-binding domain, CaLB)	28	C2 domain-like	All beta proteins
49584	Periplasmic chaperone C-domain	4	C2 domain-like	All beta proteins
49590	PHL pollen allergen	2	C2 domain-like	All beta proteins
49594	Rab geranylgeranyltransferase alpha-subunit, insert domain	1	C2 domain-like	All beta proteins
49599	TRAF domain-like	4	TRAF domain-like	All beta proteins
49606	Neurophysin II	1	Neurophysin II	All beta proteins
49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	5	Lipase/lipooxygenase domain (PLAT/LH2 domain)	All beta proteins
49742	PHM/PNGase F	4	Nucleoplasmin-like/VP (viral coat and capsid proteins)	All beta proteins
49749	Group II dsDNA viruses VP	6	Nucleoplasmin-like/VP (viral coat and capsid proteins)	All beta proteins
49758	Calpain large subunit, middle domain (domain III)	1	Calpain large subunit, middle domain (domain III)	All beta proteins
49764	HSP20-like chaperones	13	HSP20-like chaperones	All beta proteins
49772	Ecotin, trypsin inhibitor	1	Ecotin, trypsin inhibitor	All beta proteins
49777	PEBP-like	5	PEBP-like	All beta proteins
49785	Galactose-binding domain-like	79	Galactose-binding domain-like	All beta proteins
49818	Viral protein domain	9	Viral protein domain	All beta proteins
49830	ENV polyprotein, receptor-binding domain	1	ENV polyprotein, receptor-binding domain	All beta proteins
49835	Virus attachment protein globular domain	7	Virus attachment protein globular domain	All beta proteins
49842	TNF-like	21	TNF-like	All beta proteins
49854	Spermadhesin, CUB domain	9	CUB-like	All beta proteins
49863	Hyaluronate lyase-like, C-terminal domain	6	Hyaluronate lyase-like, C-terminal domain	All beta proteins
49870	Osmotin, thaumatin-like protein	2	Osmotin, thaumatin-like protein	All beta proteins
49889	Soluble secreted chemokine inhibitor, VCCI	1	Soluble secreted chemokine inhibitor, VCCI	All beta proteins
49894	Baculovirus p35 protein	1	Baculovirus p35 protein	All beta proteins
49998	Amine oxidase catalytic domain	5	Supersandwich	All beta proteins
50012	EV matrix protein	2	EV matrix protein	All beta proteins
50017	gp9	1	gp9	All beta proteins
50022	ISP domain	17	ISP domain	All beta proteins
50044	SH3-domain	71	SH3-like barrel	All beta proteins
50084	Myosin S1 fragment, N-terminal domain	4	SH3-like barrel	All beta proteins
50090	Electron transport accessory proteins	5	SH3-like barrel	All beta proteins
50118	Cell growth inhibitor/plasmid maintenance toxic component	7	SH3-like barrel	All beta proteins
50122	DNA-binding domain of retroviral integrase	3	SH3-like barrel	All beta proteins
50129	GroES-like	20	GroES-like	All beta proteins
50151	SacY-like RNA-binding domain	1	GroES-like	All beta proteins
50176	N-terminal domains of the minor coat protein g3p	4	N-terminal domains of the minor coat protein g3p	All beta proteins
50193	Ribosomal protein L14	2	Ribosomal protein L14	All beta proteins
50199	Staphylococcal nuclease	1	OB-fold	All beta proteins
50203	Bacterial enterotoxins	20	OB-fold	All beta proteins
50242	TIMP-like	6	OB-fold	All beta proteins
50324	Inorganic pyrophosphatase	5	OB-fold	All beta proteins
50331	MOP-like	12	OB-fold	All beta proteins
50341	CheW-like	4	OB-fold	All beta proteins
50346	PRC-barrel domain	4	PRC-barrel domain	All beta proteins
50370	Ricin B-like lectins	19	beta-Trefoil	All beta proteins
50382	Agglutinin	2	beta-Trefoil	All beta proteins
50405	Actin-crosslinking proteins	5	beta-Trefoil	All beta proteins
50443	FucI/AraA C-terminal domain-like	2	Reductase/isomerase/elongation factor common domain	All beta proteins
50447	Translation proteins	24	Reductase/isomerase/elongation factor common domain	All beta proteins
50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	6	Elongation factor/aminomethyltransferase common domain	All beta proteins
50486	FMT C-terminal domain-like	6	FMT C-terminal domain-like	All beta proteins
50610	mu transposase, C-terminal domain	1	mu transposase, C-terminal domain	All beta proteins
50615	N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases	5	Domain of alpha and beta subunits of F1 ATP synthase-like	All beta proteins
50621	Alanine racemase C-terminal domain-like	8	Domain of alpha and beta subunits of F1 ATP synthase-like	All beta proteins
50677	ValRS/IleRS/LeuRS editing domain	4	ValRS/IleRS/LeuRS editing domain	All beta proteins
50685	Barwin-like endoglucanases	8	Double psi beta-barrel	All beta proteins
50692	ADC-like	15	Double psi beta-barrel	All beta proteins
50715	Ribosomal protein L25-like	4	Ribosomal protein L25-like	All beta proteins
50723	Core binding factor beta, CBF	1	Core binding factor beta, CBF	All beta proteins
50784	Transcription factor IIA (TFIIA), beta-barrel domain	3	Transcription factor IIA (TFIIA), beta-barrel domain	All beta proteins
50789	Herpes virus serine proteinase, assemblin	3	Herpes virus serine proteinase, assemblin	All beta proteins
50800	PK beta-barrel domain-like	5	PK beta-barrel domain-like	All beta proteins
50809	XRCC4, N-terminal domain	1	XRCC4, N-terminal domain	All beta proteins
50814	Lipocalins	51	Lipocalins	All beta proteins
50876	Avidin/streptavidin	6	Streptavidin-like	All beta proteins
50882	beta-Barrel protease inhibitors	5	Streptavidin-like	All beta proteins
50886	D-aminopeptidase, middle and C-terminal domains	2	Streptavidin-like	All beta proteins
50891	Cyclophilin-like	9	Cyclophilin-like	All beta proteins
50904	Oncogene products	2	Oncogene products	All beta proteins
50911	Mannose 6-phosphate receptor domain	6	Mannose 6-phosphate receptor domain	All beta proteins
50916	Rap30/74 interaction domain-like	4	triple barrel	All beta proteins
50923	Hemopexin-like domain	7	4-bladed beta-propeller	All beta proteins
50934	Tachylectin-2	1	5-bladed beta-propeller	All beta proteins
50939	Sialidases	16	6-bladed beta-propeller	All beta proteins
50952	Soluble quinoprotein glucose dehydrogenase	1	6-bladed beta-propeller	All beta proteins
50956	Thermostable phytase (3-phytase)	1	6-bladed beta-propeller	All beta proteins
50960	TolB, C-terminal domain	1	6-bladed beta-propeller	All beta proteins
50965	Galactose oxidase, central domain	1	7-bladed beta-propeller	All beta proteins
50969	YVTN repeat-like/Quinoprotein amine dehydrogenase	5	7-bladed beta-propeller	All beta proteins
50974	Nitrous oxide reductase, N-terminal domain	1	7-bladed beta-propeller	All beta proteins
50985	RCC1/BLIP-II	2	7-bladed beta-propeller	All beta proteins
50989	Clathrin heavy-chain terminal domain	1	7-bladed beta-propeller	All beta proteins
50993	Peptidase/esterase \'gauge\' domain	7	7-bladed beta-propeller	All beta proteins
50998	Quinoprotein alcohol dehydrogenase-like	4	8-bladed beta-propeller	All beta proteins
51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase	1	8-bladed beta-propeller	All beta proteins
51011	Glycosyl hydrolase domain	50	Glycosyl hydrolase domain	All beta proteins
51045	WW domain	9	WW domain-like	All beta proteins
51064	Head domain of nucleotide exchange factor GrpE	1	Head domain of nucleotide exchange factor GrpE	All beta proteins
51069	Carbonic anhydrase	13	Carbonic anhydrase	All beta proteins
51081	Bacteriochlorophyll A protein	1	Bacteriochlorophyll A protein	All beta proteins
51087	Outer surface protein	2	open-sided beta-meander	All beta proteins
51092	Vitelline membrane outer protein-I (VMO-I)	1	beta-Prism I	All beta proteins
51096	delta-Endotoxin (insectocide), middle domain	6	beta-Prism I	All beta proteins
51110	alpha-D-mannose-specific plant lectins	5	beta-Prism II	All beta proteins
51120	beta-Roll	1	Single-stranded right-handed beta-helix	All beta proteins
51156	Insect cysteine-rich antifreeze protein	1	Single-stranded right-handed beta-helix	All beta proteins
51177	An insect antifreeze protein	1	Single-stranded left-handed beta-helix	All beta proteins
51206	cAMP-binding domain-like	31	Double-stranded beta-helix	All beta proteins
51215	Regulatory protein AraC	1	Double-stranded beta-helix	All beta proteins
51219	TRAP-like	3	Double-stranded beta-helix	All beta proteins
51225	Fibre shaft of virus attachment proteins	2	Triple beta-spiral	All beta proteins
51230	Single hybrid motif	9	Barrel-sandwich hybrid	All beta proteins
51246	Rudiment single hybrid motif	10	Barrel-sandwich hybrid	All beta proteins
51261	Duplicated hybrid motif	3	Barrel-sandwich hybrid	All beta proteins
51269	AFP III-like domain	3	beta-clip	All beta proteins
51274	Head decoration protein D (gpD, major capsid protein D)	1	beta-clip	All beta proteins
51278	Urease, beta-subunit	1	beta-clip	All beta proteins
51283	dUTPase-like	15	beta-clip	All beta proteins
51289	Tlp20, baculovirus telokin-like protein	1	beta-clip	All beta proteins
51294	Hedgehog/intein (Hint) domain	7	Hedgehog/intein (Hint) domain	All beta proteins
51306	LexA/Signal peptidase	5	LexA/Signal peptidase	All beta proteins
51316	Mss4-like	7	Mss4-like	All beta proteins
51322	Cyanovirin-N	5	Cyanovirin-N	All beta proteins
51327	Head-binding domain of phage P22 tailspike protein	1	Head-binding domain of phage P22 tailspike protein	All beta proteins
51332	E2 regulatory, transactivation domain	3	E2 regulatory, transactivation domain	All beta proteins
51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain	3	Epsilon subunit of F1F0-ATP synthase N-terminal domain	All beta proteins
51351	Triosephosphate isomerase (TIM)	6	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51366	Ribulose-phoshate binding barrel	39	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51391	Thiamin phosphate synthase	3	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51395	FMN-linked oxidoreductases	27	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51412	Inosine monophosphate dehydrogenase (IMPDH)	4	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51419	PLP-binding barrel	10	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51430	NAD(P)-linked oxidoreductase	19	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51556	Metallo-dependent hydrolases	60	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51569	Aldolase	65	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51604	Enolase C-terminal domain-like	43	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51621	Phosphoenolpyruvate/pyruvate domain	19	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51645	Malate synthase G	1	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51649	RuBisCo, C-terminal domain	5	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51658	Xylose isomerase-like	13	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51679	Bacterial luciferase-like	14	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51690	Nicotinate/Quinolinate PRTase C-terminal domain-like	10	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51695	PLC-like phosphodiesterases	16	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51703	Cobalamin (vitamin B12)-dependent enzymes	5	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51713	tRNA-guanine transglycosylase	2	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51717	Dihydropteroate synthetase-like	10	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51726	UROD/MetE-like	6	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51730	FAD-linked oxidoreductase	4	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
51971	Nucleotide-binding domain	9	Nucleotide-binding domain	Alpha and beta proteins (a/b)
51984	MurCD N-terminal domain	4	MurCD N-terminal domain	Alpha and beta proteins (a/b)
51989	Glycosyl hydrolases family 6, cellulases	4	7-stranded beta/alpha barrel	Alpha and beta proteins (a/b)
51998	PFL-like glycyl radical enzymes	12	PFL-like glycyl radical enzymes	Alpha and beta proteins (a/b)
52009	Phosphohistidine domain	2	The 'swivelling' beta/beta/alpha domain	Alpha and beta proteins (a/b)
52016	LeuD/IlvD-like	6	The 'swivelling' beta/beta/alpha domain	Alpha and beta proteins (a/b)
52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain	1	The 'swivelling' beta/beta/alpha domain	Alpha and beta proteins (a/b)
52025	PA domain	2	The 'swivelling' beta/beta/alpha domain	Alpha and beta proteins (a/b)
52029	GroEL apical domain-like	3	The 'swivelling' beta/beta/alpha domain	Alpha and beta proteins (a/b)
52038	Barstar-related	2	Barstar-like	Alpha and beta proteins (a/b)
52042	Ribosomal protein L32e	1	Barstar-like	Alpha and beta proteins (a/b)
52047	RNI-like	5	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Alpha and beta proteins (a/b)
52075	Outer arm dynein light chain 1	1	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Alpha and beta proteins (a/b)
52080	Ribosomal proteins L15p and L18e	3	Ribosomal proteins L15p and L18e	Alpha and beta proteins (a/b)
52087	CRAL/TRIO domain	3	SpoIIaa-like	Alpha and beta proteins (a/b)
52091	SpoIIaa-like	5	SpoIIaa-like	Alpha and beta proteins (a/b)
52113	BRCT domain	8	BRCT domain	Alpha and beta proteins (a/b)
52121	Lumazine synthase	3	Lumazine synthase	Alpha and beta proteins (a/b)
52141	Uracil-DNA glycosylase-like	8	Uracil-DNA glycosylase-like	Alpha and beta proteins (a/b)
52156	Initiation factor IF2/eIF5b, domain 3	1	Initiation factor IF2/eIF5b, domain 3	Alpha and beta proteins (a/b)
52161	Ribosomal protein L13	2	Ribosomal protein L13	Alpha and beta proteins (a/b)
52166	Ribosomal protein L4	4	Ribosomal protein L4	Alpha and beta proteins (a/b)
52172	CheY-like	100	Flavodoxin-like	Alpha and beta proteins (a/b)
52200	Toll/Interleukin receptor TIR domain	4	Flavodoxin-like	Alpha and beta proteins (a/b)
52206	Hypothetical protein MTH538	1	Flavodoxin-like	Alpha and beta proteins (a/b)
52210	Succinyl-CoA synthetase domains	4	Flavodoxin-like	Alpha and beta proteins (a/b)
52218	Flavoproteins	37	Flavodoxin-like	Alpha and beta proteins (a/b)
52242	Cobalamin (vitamin B12)-binding domain	5	Flavodoxin-like	Alpha and beta proteins (a/b)
52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)	2	Flavodoxin-like	Alpha and beta proteins (a/b)
52266	SGNH hydrolase	20	Flavodoxin-like	Alpha and beta proteins (a/b)
52279	Beta-D-glucan exohydrolase, C-terminal domain-like	3	Flavodoxin-like	Alpha and beta proteins (a/b)
52283	Formate/glycerate dehydrogenase catalytic domain-like	11	Flavodoxin-like	Alpha and beta proteins (a/b)
52304	Type II 3-dehydroquinate dehydratase	2	Flavodoxin-like	Alpha and beta proteins (a/b)
52309	N-(deoxy)ribosyltransferase-like	8	Flavodoxin-like	Alpha and beta proteins (a/b)
52313	Ribosomal protein S2	2	Flavodoxin-like	Alpha and beta proteins (a/b)
52317	Class I glutamine amidotransferase-like	42	Flavodoxin-like	Alpha and beta proteins (a/b)
52335	Methylglyoxal synthase-like	5	Methylglyoxal synthase-like	Alpha and beta proteins (a/b)
52343	Ferredoxin reductase-like, C-terminal NADP-linked domain	15	Ferredoxin reductase-like, C-terminal NADP-linked domain	Alpha and beta proteins (a/b)
52374	Nucleotidylyl transferase	53	Adenine nucleotide alpha hydrolase-like	Alpha and beta proteins (a/b)
52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	2	Adenine nucleotide alpha hydrolase-like	Alpha and beta proteins (a/b)
52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	3	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Alpha and beta proteins (a/b)
52425	Cryptochrome/photolyase, N-terminal domain	7	Cryptochrome/photolyase, N-terminal domain	Alpha and beta proteins (a/b)
52440	PreATP-grasp domain	23	PreATP-grasp domain	Alpha and beta proteins (a/b)
52467	DHS-like NAD/FAD-binding domain	20	DHS-like NAD/FAD-binding domain	Alpha and beta proteins (a/b)
52490	Tubulin nucleotide-binding domain-like	3	Tubulin nucleotide-binding domain-like	Alpha and beta proteins (a/b)
52499	Isochorismatase-like hydrolases	23	Isochorismatase-like hydrolases	Alpha and beta proteins (a/b)
52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	6	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Alpha and beta proteins (a/b)
52518	Thiamin diphosphate-binding fold (THDP-binding)	29	Thiamin diphosphate-binding fold (THDP-binding)	Alpha and beta proteins (a/b)
52728	PTS IIb component	5	PTS IIb component	Alpha and beta proteins (a/b)
52733	Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)	4	Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)	Alpha and beta proteins (a/b)
52738	Methylesterase CheB, C-terminal domain	1	Methylesterase CheB, C-terminal domain	Alpha and beta proteins (a/b)
52743	Subtilisin-like	11	Subtilisin-like	Alpha and beta proteins (a/b)
52768	Arginase/deacetylase	15	Arginase/deacetylase	Alpha and beta proteins (a/b)
52777	CoA-dependent acyltransferases	22	CoA-dependent acyltransferases	Alpha and beta proteins (a/b)
52788	Phosphotyrosine protein phosphatases I	13	Phosphotyrosine protein phosphatases I-like	Alpha and beta proteins (a/b)
52794	PTS system IIB component-like	5	Phosphotyrosine protein phosphatases I-like	Alpha and beta proteins (a/b)
52799	(Phosphotyrosine protein) phosphatases II	38	(Phosphotyrosine protein) phosphatases II	Alpha and beta proteins (a/b)
52821	Rhodanese/Cell cycle control phosphatase	21	Rhodanese/Cell cycle control phosphatase	Alpha and beta proteins (a/b)
52913	RNA 3\'-terminal phosphate cyclase, RPTC, insert domain	1	Thioredoxin fold	Alpha and beta proteins (a/b)
52922	TK C-terminal domain-like	8	TK C-terminal domain-like	Alpha and beta proteins (a/b)
52935	PK C-terminal domain-like	5	Pyruvate kinase C-terminal domain-like	Alpha and beta proteins (a/b)
52943	ATP synthase (F1-ATPase), gamma subunit	4	Pyruvate kinase C-terminal domain-like	Alpha and beta proteins (a/b)
52949	Macro domain-like	14	Macro domain-like	Alpha and beta proteins (a/b)
52954	Class II aaRS ABD-related	13	Anticodon-binding domain-like	Alpha and beta proteins (a/b)
52964	TolB, N-terminal domain	2	Anticodon-binding domain-like	Alpha and beta proteins (a/b)
52968	B12-dependent dehydatase associated subunit	3	Anticodon-binding domain-like	Alpha and beta proteins (a/b)
52972	ITPase-like	9	Anticodon-binding domain-like	Alpha and beta proteins (a/b)
53032	tRNA-intron endonuclease catalytic domain-like	4	Restriction endonuclease-like	Alpha and beta proteins (a/b)
53036	Eukaryotic RPB5 N-terminal domain	1	Restriction endonuclease-like	Alpha and beta proteins (a/b)
53041	Resolvase-like	4	Resolvase-like	Alpha and beta proteins (a/b)
53056	beta-carbonic anhydrase, cab	13	Resolvase-like	Alpha and beta proteins (a/b)
53062	PTS system fructose IIA component-like	10	PTS system fructose IIA component-like	Alpha and beta proteins (a/b)
53092	Creatinase/prolidase N-terminal domain	3	Ribonuclease H-like motif	Alpha and beta proteins (a/b)
53137	Translational machinery components	7	Ribonuclease H-like motif	Alpha and beta proteins (a/b)
53146	Nitrogenase accessory factor-like	5	Ribonuclease H-like motif	Alpha and beta proteins (a/b)
53150	DNA repair protein MutS, domain II	2	Ribonuclease H-like motif	Alpha and beta proteins (a/b)
53155	Methylated DNA-protein cysteine methyltransferase domain	3	Ribonuclease H-like motif	Alpha and beta proteins (a/b)
53163	HybD-like	2	Phosphorylase/hydrolase-like	Alpha and beta proteins (a/b)
53167	Purine and uridine phosphorylases	20	Phosphorylase/hydrolase-like	Alpha and beta proteins (a/b)
53178	Peptidyl-tRNA hydrolase-like	4	Phosphorylase/hydrolase-like	Alpha and beta proteins (a/b)
53182	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	3	Phosphorylase/hydrolase-like	Alpha and beta proteins (a/b)
53213	LigB-like	2	Phosphorylase/hydrolase-like	Alpha and beta proteins (a/b)
53218	Molybdenum cofactor biosynthesis proteins	11	Molybdenum cofactor biosynthesis proteins	Alpha and beta proteins (a/b)
53223	Aminoacid dehydrogenase-like, N-terminal domain	19	Aminoacid dehydrogenase-like, N-terminal domain	Alpha and beta proteins (a/b)
53244	MurD-like peptide ligases, peptide-binding domain	7	MurD-like peptide ligases, peptide-binding domain	Alpha and beta proteins (a/b)
53254	Phosphoglycerate mutase-like	15	Phosphoglycerate mutase-like	Alpha and beta proteins (a/b)
53271	PRTase-like	37	PRTase-like	Alpha and beta proteins (a/b)
53300	vWA-like	17	vWA-like	Alpha and beta proteins (a/b)
53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III	1	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III	Alpha and beta proteins (a/b)
53328	Formyltransferase	8	Formyltransferase	Alpha and beta proteins (a/b)
53383	PLP-dependent transferases	143	PLP-dependent transferase-like	Alpha and beta proteins (a/b)
53448	Nucleotide-diphospho-sugar transferases	43	Nucleotide-diphospho-sugar transferases	Alpha and beta proteins (a/b)
53597	Dihydrofolate reductase-like	20	Dihydrofolate reductase-like	Alpha and beta proteins (a/b)
53613	Ribokinase-like	51	Ribokinase-like	Alpha and beta proteins (a/b)
53623	MurD-like peptide ligases, catalytic domain	8	Ribokinase-like	Alpha and beta proteins (a/b)
53633	Carbamate kinase-like	14	Carbamate kinase-like	Alpha and beta proteins (a/b)
53639	AraD/HMP-PK domain-like	9	AraD/HMP-PK domain-like	Alpha and beta proteins (a/b)
53649	Alkaline phosphatase-like	9	Alkaline phosphatase-like	Alpha and beta proteins (a/b)
53659	Isocitrate/Isopropylmalate dehydrogenase-like	16	Isocitrate/Isopropylmalate dehydrogenase-like	Alpha and beta proteins (a/b)
53671	Aspartate/ornithine carbamoyltransferase	21	ATC-like	Alpha and beta proteins (a/b)
53681	Aspartate/glutamate racemase	8	ATC-like	Alpha and beta proteins (a/b)
53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes	20	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Alpha and beta proteins (a/b)
53697	SIS domain	17	SIS domain	Alpha and beta proteins (a/b)
53706	Formate dehydrogenase/DMSO reductase, domains 1-3	9	Formate dehydrogenase/DMSO reductase, domains 1-3	Alpha and beta proteins (a/b)
53720	ALDH-like	35	ALDH-like	Alpha and beta proteins (a/b)
53732	Aconitase iron-sulfur domain	3	Aconitase iron-sulfur domain	Alpha and beta proteins (a/b)
53738	Phosphoglucomutase, first 3 domains	6	Phosphoglucomutase, first 3 domains	Alpha and beta proteins (a/b)
53743	FucI/AraA N-terminal and middle domains	2	FucI/AraA N-terminal and middle domains	Alpha and beta proteins (a/b)
53748	Phosphoglycerate kinase	3	Phosphoglycerate kinase	Alpha and beta proteins (a/b)
53756	UDP-Glycosyltransferase/glycogen phosphorylase	41	UDP-Glycosyltransferase/glycogen phosphorylase	Alpha and beta proteins (a/b)
53774	Glutaminase/Asparaginase	5	Glutaminase/Asparaginase	Alpha and beta proteins (a/b)
53784	Phosphofructokinase	2	Phosphofructokinase	Alpha and beta proteins (a/b)
53790	Tetrapyrrole methylase	8	Tetrapyrrole methylase	Alpha and beta proteins (a/b)
53795	PEP carboxykinase-like	5	PEP carboxykinase-like	Alpha and beta proteins (a/b)
53800	Chelatase	5	Chelatase-like	Alpha and beta proteins (a/b)
53822	Periplasmic binding protein-like I	98	Periplasmic binding protein-like I	Alpha and beta proteins (a/b)
53901	Thiolase-like	57	Thiolase-like	Alpha and beta proteins (a/b)
53920	Fe-only hydrogenase	1	Fe-only hydrogenase	Alpha and beta proteins (a/b)
53927	Cytidine deaminase-like	24	Cytidine deaminase-like	Alpha and beta proteins (a/b)
53933	Microbial ribonucleases	5	Microbial ribonucleases	Alpha and beta proteins (a+b)
54076	RNase A-like	8	RNase A-like	Alpha and beta proteins (a+b)
54098	Prion-like	3	Prion-like	Alpha and beta proteins (a+b)
54106	LysM domain	5	LysM domain	Alpha and beta proteins (a+b)
54111	Urease, gamma-subunit	1	Urease, gamma-subunit	Alpha and beta proteins (a+b)
54117	Interleukin 8-like chemokines	20	IL8-like	Alpha and beta proteins (a+b)
54160	Chromo domain-like	21	SH3-like barrel	All beta proteins
54171	DNA-binding domain	6	DNA-binding domain	Alpha and beta proteins (a+b)
54184	Penicillin-binding protein 2x (pbp-2x), c-terminal domain	2	Penicillin-binding protein 2x (pbp-2x), c-terminal domain	Alpha and beta proteins (a+b)
54189	Ribosomal proteins S24e, L23 and L15e	6	Ribosomal proteins S24e, L23 and L15e	Alpha and beta proteins (a+b)
54236	Ubiquitin-like	78	beta-Grasp (ubiquitin-like)	Alpha and beta proteins (a+b)
54277	CAD & PB1 domains	14	beta-Grasp (ubiquitin-like)	Alpha and beta proteins (a+b)
54285	MoaD/ThiS	12	beta-Grasp (ubiquitin-like)	Alpha and beta proteins (a+b)
54292	2Fe-2S ferredoxin-like	22	beta-Grasp (ubiquitin-like)	Alpha and beta proteins (a+b)
54328	Staphylokinase/streptokinase	4	beta-Grasp (ubiquitin-like)	Alpha and beta proteins (a+b)
54334	Superantigen toxins, C-terminal domain	10	beta-Grasp (ubiquitin-like)	Alpha and beta proteins (a+b)
54358	Immunoglobulin-binding domains	2	beta-Grasp (ubiquitin-like)	Alpha and beta proteins (a+b)
54364	Translation initiation factor IF3, N-terminal domain	1	beta-Grasp (ubiquitin-like)	Alpha and beta proteins (a+b)
54368	Glutamine synthetase, N-terminal domain	3	beta-Grasp (ubiquitin-like)	Alpha and beta proteins (a+b)
54373	FAD-linked reductases, C-terminal domain	24	FAD-linked reductases, C-terminal domain	Alpha and beta proteins (a+b)
54403	Cystatin/monellin	18	Cystatin-like	Alpha and beta proteins (a+b)
54416	Amine oxidase N-terminal region	10	Cystatin-like	Alpha and beta proteins (a+b)
54423	DsbC/DsbG N-terminal domain-like	3	Cystatin-like	Alpha and beta proteins (a+b)
54427	NTF2-like	76	Cystatin-like	Alpha and beta proteins (a+b)
54441	Uracil-DNA glycosylase inhibitor protein	1	Cystatin-like	Alpha and beta proteins (a+b)
54447	ssDNA-binding transcriptional regulator domain	7	ssDNA-binding transcriptional regulator domain	Alpha and beta proteins (a+b)
54452	MHC antigen-recognition domain	18	MHC antigen-recognition domain	Alpha and beta proteins (a+b)
54495	UBC-like	28	UBC-like	Alpha and beta proteins (a+b)
54511	GFP-like	7	GFP-like	Alpha and beta proteins (a+b)
54518	Tubby C-terminal domain-like	2	Tubby C-terminal domain-like	Alpha and beta proteins (a+b)
54523	Pili subunits	14	Pili subunits	Alpha and beta proteins (a+b)
54529	Mitochondrial glycoprotein MAM33-like	3	Mitochondrial glycoprotein MAM33-like	Alpha and beta proteins (a+b)
54534	FKBP-like	27	FKBP-like	Alpha and beta proteins (a+b)
54552	Colicin E3 immunity protein	1	FKBP-like	Alpha and beta proteins (a+b)
54556	Chitinase insertion domain	7	FKBP-like	Alpha and beta proteins (a+b)
54565	Ribosomal protein S16	3	Ribosomal protein S16	Alpha and beta proteins (a+b)
54570	Ribosomal protein S19	1	Ribosomal protein S19	Alpha and beta proteins (a+b)
54575	Ribosomal protein L31e	1	Ribosomal protein L31e	Alpha and beta proteins (a+b)
54580	Allophycocyanin linker chain (domain)	1	Allophycocyanin linker chain (domain)	Alpha and beta proteins (a+b)
54585	Cdc48 domain 2-like	5	Cdc48 domain 2-like	Alpha and beta proteins (a+b)
54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	45	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	Alpha and beta proteins (a+b)
54611	SecB-like	2	SecB-like	Alpha and beta proteins (a+b)
54616	DNA-binding domain of Mlu1-box binding protein MBP1	1	DNA-binding domain of Mlu1-box binding protein MBP1	Alpha and beta proteins (a+b)
54621	Heme-binding protein A (HasA)	2	Heme-binding protein A (HasA)	Alpha and beta proteins (a+b)
54626	Chalcone isomerase	1	Chalcone isomerase	Alpha and beta proteins (a+b)
54631	CBS-domain pair	32	CBS-domain pair	Alpha and beta proteins (a+b)
54637	Thioesterase/thiol ester dehydrase-isomerase	77	Thioesterase/thiol ester dehydrase-isomerase	Alpha and beta proteins (a+b)
54648	DLC	1	DLC	Alpha and beta proteins (a+b)
54654	CI-2 family of serine protease inhibitors	3	CI-2 family of serine protease inhibitors	Alpha and beta proteins (a+b)
54665	CO dehydrogenase molybdoprotein N-domain-like	6	alpha/beta-Hammerhead	Alpha and beta proteins (a+b)
54675	Nicotinate/Quinolinate PRTase N-terminal domain-like	17	alpha/beta-Hammerhead	Alpha and beta proteins (a+b)
54680	Pyrimidine nucleoside phosphorylase C-terminal domain	3	alpha/beta-Hammerhead	Alpha and beta proteins (a+b)
54686	Ribosomal protein L16p/L10e	3	alpha/beta-Hammerhead	Alpha and beta proteins (a+b)
54690	Molybdopterin synthase subunit MoaE	6	alpha/beta-Hammerhead	Alpha and beta proteins (a+b)
54695	POZ domain	22	POZ domain	Alpha and beta proteins (a+b)
54713	Elongation factor Ts (EF-Ts), dimerisation domain	5	EF-Ts domain-like	Alpha and beta proteins (a+b)
54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain	8	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Alpha and beta proteins (a+b)
54736	ClpS-like	4	ClpS-like	Alpha and beta proteins (a+b)
54747	Ribosomal L11/L12e N-terminal domain	2	Ribosomal L11/L12e N-terminal domain	Alpha and beta proteins (a+b)
54752	RecA protein, C-terminal domain	2	Anti-LPS factor/recA domain	Alpha and beta proteins (a+b)
54762	Signal recognition particle alu RNA binding heterodimer, SRP9/14	3	Signal recognition particle alu RNA binding heterodimer, SRP9/14	Alpha and beta proteins (a+b)
54768	dsRNA-binding domain-like	18	dsRBD-like	Alpha and beta proteins (a+b)
54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain	2	dsRBD-like	Alpha and beta proteins (a+b)
54786	YcfA/nrd intein domain	3	dsRBD-like	Alpha and beta proteins (a+b)
54791	Eukaryotic type KH-domain (KH-domain type I)	28	Eukaryotic type KH-domain (KH-domain type I)	Alpha and beta proteins (a+b)
54806	Alpha-lytic protease prodomain	2	Alpha-lytic protease prodomain-like	Alpha and beta proteins (a+b)
54810	GMP synthetase C-terminal dimerisation domain	1	Alpha-lytic protease prodomain-like	Alpha and beta proteins (a+b)
54814	Prokaryotic type KH domain (KH-domain type II)	7	Alpha-lytic protease prodomain-like	Alpha and beta proteins (a+b)
54821	Ribosomal protein S3 C-terminal domain	1	Ribosomal protein S3 C-terminal domain	Alpha and beta proteins (a+b)
54826	Enolase N-terminal domain-like	39	Enolase N-terminal domain-like	Alpha and beta proteins (a+b)
54843	Ribosomal protein L22	2	Ribosomal protein L22	Alpha and beta proteins (a+b)
54849	GroEL-intermediate domain like	2	GroEL-intermediate domain like	Alpha and beta proteins (a+b)
54857	DNA damage-inducible protein DinI	1	DNA damage-inducible protein DinI	Alpha and beta proteins (a+b)
54893	Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain	1	Ferredoxin-like	Alpha and beta proteins (a+b)
54913	GlnB-like	16	Ferredoxin-like	Alpha and beta proteins (a+b)
54919	Nucleoside diphosphate kinase, NDK	5	Ferredoxin-like	Alpha and beta proteins (a+b)
54928	RNA-binding domain, RBD, aka RNA recognition motif (RRM)	129	Ferredoxin-like	Alpha and beta proteins (a+b)
54957	Viral DNA-binding domain	3	Ferredoxin-like	Alpha and beta proteins (a+b)
54966	RuBisCO, large subunit, small (N-terminal) domain	7	Ferredoxin-like	Alpha and beta proteins (a+b)
54980	EF-G C-terminal domain-like	10	Ferredoxin-like	Alpha and beta proteins (a+b)
54984	eEF-1beta-like	2	Ferredoxin-like	Alpha and beta proteins (a+b)
54991	Anticodon-binding domain of PheRS	1	Ferredoxin-like	Alpha and beta proteins (a+b)
54995	Ribosomal protein S6	4	Ferredoxin-like	Alpha and beta proteins (a+b)
54999	Ribosomal protein S10	1	Ferredoxin-like	Alpha and beta proteins (a+b)
55003	PAP/Archaeal CCA-adding enzyme, C-terminal domain	3	Ferredoxin-like	Alpha and beta proteins (a+b)
55008	HMA, heavy metal-associated domain	16	Ferredoxin-like	Alpha and beta proteins (a+b)
55021	ACT-like	32	Ferredoxin-like	Alpha and beta proteins (a+b)
55031	Bacterial exopeptidase dimerisation domain	8	Ferredoxin-like	Alpha and beta proteins (a+b)
55035	NAD-binding domain of HMG-CoA reductase	2	Ferredoxin-like	Alpha and beta proteins (a+b)
55040	Molybdenum cofactor biosynthesis protein C, MoaC	2	Ferredoxin-like	Alpha and beta proteins (a+b)
55044	TRADD, N-terminal domain	1	Ferredoxin-like	Alpha and beta proteins (a+b)
55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase	3	Ferredoxin-like	Alpha and beta proteins (a+b)
55052	CheY-binding domain of CheA	2	Ferredoxin-like	Alpha and beta proteins (a+b)
55056	Killer toxin KP6 alpha-subunit	1	Ferredoxin-like	Alpha and beta proteins (a+b)
55060	GHMP Kinase, C-terminal domain	12	Ferredoxin-like	Alpha and beta proteins (a+b)
55064	Translational regulator protein regA	1	Ferredoxin-like	Alpha and beta proteins (a+b)
55068	Peptide methionine sulfoxide reductase	3	Ferredoxin-like	Alpha and beta proteins (a+b)
55073	Nucleotide cyclase	13	Ferredoxin-like	Alpha and beta proteins (a+b)
55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK	1	Ferredoxin-like	Alpha and beta proteins (a+b)
55088	Methyl-coenzyme M reductase subunits	5	Ferredoxin-like	Alpha and beta proteins (a+b)
55103	FAD-linked oxidases, C-terminal domain	8	Ferredoxin-like	Alpha and beta proteins (a+b)
55112	Formylmethanofuran:tetrahydromethanopterin formyltransferase	2	Ferredoxin-like	Alpha and beta proteins (a+b)
55116	Formiminotransferase domain of formiminotransferase-cyclodeaminase.	2	Ferredoxin-like	Alpha and beta proteins (a+b)
55120	Pseudouridine synthase	9	Pseudouridine synthase	Alpha and beta proteins (a+b)
55124	Nitrite/Sulfite reductase N-terminal domain-like	8	Ferredoxin-like	Alpha and beta proteins (a+b)
55129	Ribosomal protein L30p/L7e	2	Ribosomal protein L30p/L7e	Alpha and beta proteins (a+b)
55136	Probable bacterial effector-binding domain	5	Probable bacterial effector-binding domain	Alpha and beta proteins (a+b)
55144	LigT-like	6	LigT-like	Alpha and beta proteins (a+b)
55149	Pepsin inhibitor-3	1	Pepsin inhibitor-3	Alpha and beta proteins (a+b)
55154	CYTH-like phosphatases	6	CYTH-like phosphatases	Alpha and beta proteins (a+b)
55159	eIF1-like	2	eIF1-like	Alpha and beta proteins (a+b)
55166	Hedgehog/DD-peptidase	5	Hedgehog/DD-peptidase	Alpha and beta proteins (a+b)
55174	Alpha-L RNA-binding motif	7	Alpha-L RNA-binding motif	Alpha and beta proteins (a+b)
55186	ThrRS/AlaRS common domain	3	RRF/tRNA synthetase additional domain-like	Alpha and beta proteins (a+b)
55190	Arginyl-tRNA synthetase (ArgRS), N-terminal \'additional\' domain	2	RRF/tRNA synthetase additional domain-like	Alpha and beta proteins (a+b)
55194	Ribosome recycling factor, RRF	4	RRF/tRNA synthetase additional domain-like	Alpha and beta proteins (a+b)
55200	Translation initiation factor IF3, C-terminal domain	3	IF3-like	Alpha and beta proteins (a+b)
55205	EPT/RTPC-like	4	IF3-like	Alpha and beta proteins (a+b)
55229	Cell division protein MinE topological specificity domain	2	Cell division protein MinE topological specificity domain	Alpha and beta proteins (a+b)
55234	Cyanase C-terminal domain	1	Cyanase C-terminal domain	Alpha and beta proteins (a+b)
55239	RuBisCO, small subunit	3	RuBisCO, small subunit	Alpha and beta proteins (a+b)
55248	PCD-like	3	DCoH-like	Alpha and beta proteins (a+b)
55252	C-terminal domain of arginine repressor	2	DCoH-like	Alpha and beta proteins (a+b)
55257	RBP11-like subunits of RNA polymerase	6	DCoH-like	Alpha and beta proteins (a+b)
55261	GAD domain-like	4	DCoH-like	Alpha and beta proteins (a+b)
55267	tRNA-intron endonuclease N-terminal domain-like	3	MutS N-terminal domain-like	Alpha and beta proteins (a+b)
55271	DNA repair protein MutS, domain I	2	MutS N-terminal domain-like	Alpha and beta proteins (a+b)
55277	GYF domain	2	GYF/BRK domain-like	Alpha and beta proteins (a+b)
55282	RL5-like	8	RL5-like	Alpha and beta proteins (a+b)
55287	RPB5-like RNA polymerase subunit	1	RPB5-like RNA polymerase subunit	Alpha and beta proteins (a+b)
55307	Tubulin C-terminal domain-like	8	Bacillus chorismate mutase-like	Alpha and beta proteins (a+b)
55315	L30e-like	11	Bacillus chorismate mutase-like	Alpha and beta proteins (a+b)
55326	PurM N-terminal domain-like	11	Bacillus chorismate mutase-like	Alpha and beta proteins (a+b)
55331	Tautomerase/MIF	26	Tautomerase/MIF	Alpha and beta proteins (a+b)
55383	Copper amine oxidase, domain N	1	N domain of copper amine oxidase-like	Alpha and beta proteins (a+b)
55387	Frataxin/Nqo15-like	4	N domain of copper amine oxidase-like	Alpha and beta proteins (a+b)
55394	Bactericidal permeability-increasing protein, BPI	3	Aha1/BPI domain-like	Alpha and beta proteins (a+b)
55399	Subtilisin inhibitor	2	Subtilisin inhibitor	Alpha and beta proteins (a+b)
55405	RNA bacteriophage capsid protein	3	RNA bacteriophage capsid protein	Alpha and beta proteins (a+b)
55418	eIF4e-like	6	eIF4e-like	Alpha and beta proteins (a+b)
55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain	13	CO dehydrogenase flavoprotein C-domain-like	Alpha and beta proteins (a+b)
55447	CO dehydrogenase flavoprotein C-terminal domain-like	6	CO dehydrogenase flavoprotein C-domain-like	Alpha and beta proteins (a+b)
55455	SRF-like	2	SRF-like	Alpha and beta proteins (a+b)
55464	Origin of replication-binding domain, RBD-like	7	Origin of replication-binding domain, RBD-like	Alpha and beta proteins (a+b)
55469	FMN-dependent nitroreductase-like	31	FMN-dependent nitroreductase-like	Alpha and beta proteins (a+b)
55481	N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1	2	N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1	Alpha and beta proteins (a+b)
55545	beta-N-acetylhexosaminidase-like domain	8	Zincin-like	Alpha and beta proteins (a+b)
55550	SH2 domain	33	SH2-like	Alpha and beta proteins (a+b)
55594	HPr-like	4	HPr-like	Alpha and beta proteins (a+b)
55604	Glucose permease domain IIB	1	Homing endonuclease-like	Alpha and beta proteins (a+b)
55608	Homing endonucleases	12	Homing endonuclease-like	Alpha and beta proteins (a+b)
55620	Tetrahydrobiopterin biosynthesis enzymes-like	18	T-fold	Alpha and beta proteins (a+b)
55637	Cell cycle regulatory proteins	1	Cell cycle regulatory proteins	Alpha and beta proteins (a+b)
55648	beta-lactamase-inhibitor protein, BLIP	2	BLIP-like	Alpha and beta proteins (a+b)
55653	Ribosomal protein L9 C-domain	2	Ribosomal protein L9 C-domain	Alpha and beta proteins (a+b)
55658	L9 N-domain-like	2	MbtH/L9 domain-like	Alpha and beta proteins (a+b)
55666	Ribonuclease PH domain 2-like	15	Ribonuclease PH domain 2-like	Alpha and beta proteins (a+b)
55671	Regulatory factor Nef	1	Regulatory factor Nef	Alpha and beta proteins (a+b)
55676	CytB endotoxin-like	2	CytB endotoxin-like	Alpha and beta proteins (a+b)
55681	Class II aaRS and biotin synthetases	29	Class II aaRS and biotin synthetases	Alpha and beta proteins (a+b)
55711	Subdomain of clathrin and coatomer appendage domain	3	Subdomain of clathrin and coatomer appendage domain	Alpha and beta proteins (a+b)
55718	SCP-like	13	SCP-like	Alpha and beta proteins (a+b)
55724	Mog1p/PsbP-like	4	Mog1p/PsbP-like	Alpha and beta proteins (a+b)
55753	Actin depolymerizing proteins	24	Gelsolin-like	Alpha and beta proteins (a+b)
55770	Profilin (actin-binding protein)	4	Profilin-like	Alpha and beta proteins (a+b)
55781	GAF domain-like	21	Profilin-like	Alpha and beta proteins (a+b)
55785	PYP-like sensor domain (PAS domain)	22	Profilin-like	Alpha and beta proteins (a+b)
55797	PR-1-like	4	PR-1-like	Alpha and beta proteins (a+b)
55804	Phoshotransferase/anion transport protein	7	Phoshotransferase/anion transport protein	Alpha and beta proteins (a+b)
55816	5\'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain	3	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain	Alpha and beta proteins (a+b)
55821	YrdC/RibB	5	YrdC/RibB	Alpha and beta proteins (a+b)
55826	YbaK/ProRS associated domain	5	YbaK/ProRS associated domain	Alpha and beta proteins (a+b)
55831	Thymidylate synthase/dCMP hydroxymethylase	4	Thymidylate synthase/dCMP hydroxymethylase	Alpha and beta proteins (a+b)
55846	N-acetylmuramoyl-L-alanine amidase-like	14	N-acetylmuramoyl-L-alanine amidase-like	Alpha and beta proteins (a+b)
55856	Cytochrome b5-like heme/steroid binding domain	9	Cytochrome b5-like heme/steroid binding domain	Alpha and beta proteins (a+b)
55869	DNA topoisomerase I domain	1	DNA topoisomerase I domain	Alpha and beta proteins (a+b)
55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	18	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	Alpha and beta proteins (a+b)
55890	Sporulation response regulatory protein Spo0B	1	Sporulation response regulatory protein Spo0B	Alpha and beta proteins (a+b)
55895	Ribonuclease Rh-like	8	Ribonuclease Rh-like	Alpha and beta proteins (a+b)
55904	Ornithine decarboxylase C-terminal domain	1	Ornithine decarboxylase C-terminal domain	Alpha and beta proteins (a+b)
55909	Pentein	15	Pentein, beta/alpha-propeller	Alpha and beta proteins (a+b)
55920	Creatinase/aminopeptidase	9	Creatinase/aminopeptidase	Alpha and beta proteins (a+b)
55931	Glutamine synthetase/guanido kinase	8	Glutamine synthetase/guanido kinase	Alpha and beta proteins (a+b)
55945	TATA-box binding protein-like	6	TBP-like	Alpha and beta proteins (a+b)
55957	Phosphoglucomutase, C-terminal domain	3	TBP-like	Alpha and beta proteins (a+b)
55961	Bet v1-like	42	TBP-like	Alpha and beta proteins (a+b)
55973	S-adenosylmethionine synthetase	6	S-adenosylmethionine synthetase	Alpha and beta proteins (a+b)
56003	Molybdenum cofactor-binding domain	5	Molybdenum cofactor-binding domain	Alpha and beta proteins (a+b)
56014	Nitrite and sulphite reductase 4Fe-4S domain-like	8	Nitrite and sulphite reductase 4Fe-4S domain-like	Alpha and beta proteins (a+b)
56019	The spindle assembly checkpoint protein mad2	1	The spindle assembly checkpoint protein mad2	Alpha and beta proteins (a+b)
56024	Phospholipase D/nuclease	12	Phospholipase D/nuclease	Alpha and beta proteins (a+b)
56029	Monooxygenase (hydroxylase) regulatory protein	3	Monooxygenase (hydroxylase) regulatory protein	Alpha and beta proteins (a+b)
56037	PheT/TilS domain	2	PheT/TilS domain	All beta proteins
56042	PurM C-terminal domain-like	13	PurM C-terminal domain-like	Alpha and beta proteins (a+b)
56047	Ribosomal protein S8	2	Ribosomal protein S8	Alpha and beta proteins (a+b)
56053	Ribosomal protein L6	6	Ribosomal protein L6	Alpha and beta proteins (a+b)
56091	DNA ligase/mRNA capping enzyme, catalytic domain	10	ATP-grasp	Alpha and beta proteins (a+b)
56104	SAICAR synthase-like	6	SAICAR synthase-like	Alpha and beta proteins (a+b)
56112	Protein kinase-like (PK-like)	131	Protein kinase-like (PK-like)	Alpha and beta proteins (a+b)
56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain	2	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain	Alpha and beta proteins (a+b)
56199	Methenyltetrahydromethanopterin cyclohydrolase	1	Methenyltetrahydromethanopterin cyclohydrolase	Alpha and beta proteins (a+b)
56204	Hect, E3 ligase catalytic domain	3	Hect, E3 ligase catalytic domain	Alpha and beta proteins (a+b)
56209	Nitrile hydratase alpha chain	1	Nitrile hydratase alpha chain	Alpha and beta proteins (a+b)
56214	4\'-phosphopantetheinyl transferase	7	4'-phosphopantetheinyl transferase	Alpha and beta proteins (a+b)
56219	DNase I-like	14	DNase I-like	Alpha and beta proteins (a+b)
56228	Aldehyde ferredoxin oxidoreductase, N-terminal domain	1	Aldehyde ferredoxin oxidoreductase, N-terminal domain	Alpha and beta proteins (a+b)
56266	DmpA/ArgJ-like	2	DmpA/ArgJ-like	Alpha and beta proteins (a+b)
56300	Metallo-dependent phosphatases	25	Metallo-dependent phosphatases	Alpha and beta proteins (a+b)
56317	Carbon-nitrogen hydrolase	7	Carbon-nitrogen hydrolase	Alpha and beta proteins (a+b)
56322	ADC synthase	6	ADC synthase	Alpha and beta proteins (a+b)
56327	LDH C-terminal domain-like	27	LDH C-terminal domain-like	Alpha and beta proteins (a+b)
56349	DNA breaking-rejoining enzymes	7	DNA breaking-rejoining enzymes	Alpha and beta proteins (a+b)
56366	SMAD MH1 domain	1	SMAD MH1 domain	Alpha and beta proteins (a+b)
56371	Ribosome inactivating proteins (RIP)	14	Ribosome inactivating proteins (RIP)	Alpha and beta proteins (a+b)
56399	ADP-ribosylation	25	ADP-ribosylation	Alpha and beta proteins (a+b)
56420	Peptide deformylase	12	Peptide deformylase	Alpha and beta proteins (a+b)
56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	5	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	Alpha and beta proteins (a+b)
56487	SRCR-like	3	SRCR-like	Alpha and beta proteins (a+b)
56491	A heparin-binding domain	1	SRCR-like	Alpha and beta proteins (a+b)
56496	Fibrinogen C-terminal domain-like	5	Fibrinogen C-terminal domain-like	Alpha and beta proteins (a+b)
56502	gp120 core	1	gp120 core	Alpha and beta proteins (a+b)
56507	Methionine synthase activation domain-like	2	Methionine synthase activation domain-like	Alpha and beta proteins (a+b)
56512	Nitric oxide (NO) synthase oxygenase domain	2	Nitric oxide (NO) synthase oxygenase domain	Alpha and beta proteins (a+b)
56519	Penicillin binding protein dimerisation domain	6	Penicillin binding protein dimerisation domain	Alpha and beta proteins (a+b)
56524	Oxidoreductase molybdopterin-binding domain	2	Oxidoreductase molybdopterin-binding domain	Alpha and beta proteins (a+b)
56529	FAH	10	FAH	Alpha and beta proteins (a+b)
56534	Aromatic aminoacid monoxygenases, catalytic and oligomerization domains	2	Aromatic aminoacid monoxygenases, catalytic and oligomerization domains	Alpha and beta proteins (a+b)
56542	Substrate-binding domain of HMG-CoA reductase	2	Substrate-binding domain of HMG-CoA reductase	Alpha and beta proteins (a+b)
56548	Conserved core of transcriptional regulatory protein vp16	1	Conserved core of transcriptional regulatory protein vp16	Alpha and beta proteins (a+b)
56553	Insert subdomain of RNA polymerase alpha subunit	3	Insert subdomain of RNA polymerase alpha subunit	Alpha and beta proteins (a+b)
56558	Baseplate structural protein gp11	1	Baseplate structural protein gp11	Alpha and beta proteins (a+b)
56563	Major capsid protein gp5	1	Major capsid protein gp5	Alpha and beta proteins (a+b)
56596	Replication terminator protein (Tus)	1	Replication terminator protein (Tus)	Multi-domain proteins (alpha and beta)
56601	beta-lactamase/transpeptidase-like	49	beta-lactamase/transpeptidase-like	Multi-domain proteins (alpha and beta)
56634	Heme-dependent catalase-like	5	Heme-dependent catalase-like	Multi-domain proteins (alpha and beta)
56645	Acyl-CoA dehydrogenase NM domain-like	22	Acyl-CoA dehydrogenase NM domain-like	Multi-domain proteins (alpha and beta)
56655	Carbohydrate phosphatase	15	Carbohydrate phosphatase	Multi-domain proteins (alpha and beta)
56712	Prokaryotic type I DNA topoisomerase	3	Prokaryotic type I DNA topoisomerase	Multi-domain proteins (alpha and beta)
56719	Type II DNA topoisomerase C-terminal domain-like	3	Type II DNA topoisomerase C-terminal domain-like	Multi-domain proteins (alpha and beta)
56726	DNA topoisomerase IV, alpha subunit	1	DNA topoisomerase IV, alpha subunit	Multi-domain proteins (alpha and beta)
56731	DNA primase core	2	DNA primase core	Multi-domain proteins (alpha and beta)
56741	Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment	1	Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment	Multi-domain proteins (alpha and beta)
56747	Prim-pol domain	4	Prim-pol domain	Alpha and beta proteins (a+b)
56752	D-aminoacid aminotransferase-like PLP-dependent enzymes	10	D-aminoacid aminotransferase-like PLP-dependent enzymes	Multi-domain proteins (alpha and beta)
56762	HydB/Nqo4-like	6	HydB/Nqo4-like	Multi-domain proteins (alpha and beta)
56770	HydA/Nqo6-like	2	HydA/Nqo6-like	Multi-domain proteins (alpha and beta)
56796	Dehydroquinate synthase-like	10	Dehydroquinate synthase-like	Multi-domain proteins (alpha and beta)
56801	Acetyl-CoA synthetase-like	26	Acetyl-CoA synthetase-like	Multi-domain proteins (alpha and beta)
56808	Ribosomal protein L1	3	Ribosomal protein L1	Multi-domain proteins (alpha and beta)
56815	Sec1/munc18-like (SM) proteins	2	Sec1/munc18-like (SM) proteins	Multi-domain proteins (alpha and beta)
56821	Prismane protein-like	3	Prismane protein-like	Multi-domain proteins (alpha and beta)
56826	Upper collar protein gp10 (connector protein)	1	Upper collar protein gp10 (connector protein)	Multi-domain proteins (alpha and beta)
56831	Reovirus inner layer core protein p3	2	Reovirus inner layer core protein p3	Multi-domain proteins (alpha and beta)
56837	Colicin	2	Toxins' membrane translocation domains	Membrane and cell surface proteins and peptides
56845	Diphtheria toxin, middle domain	1	Toxins' membrane translocation domains	Membrane and cell surface proteins and peptides
56849	delta-Endotoxin (insectocide), N-terminal domain	3	Toxins' membrane translocation domains	Membrane and cell surface proteins and peptides
56854	Bcl-2 inhibitors of programmed cell death	13	Toxins' membrane translocation domains	Membrane and cell surface proteins and peptides
56864	Exotoxin A, middle domain	1	Toxins' membrane translocation domains	Membrane and cell surface proteins and peptides
56918	Light-harvesting complex subunits	9	Light-harvesting complex subunits	Membrane and cell surface proteins and peptides
56925	OMPA-like	8	Transmembrane beta-barrels	Membrane and cell surface proteins and peptides
56931	Outer membrane phospholipase A (OMPLA)	1	Transmembrane beta-barrels	Membrane and cell surface proteins and peptides
56935	Porins	18	Transmembrane beta-barrels	Membrane and cell surface proteins and peptides
56954	Outer membrane efflux proteins (OEP)	5	Outer membrane efflux proteins (OEP)	Membrane and cell surface proteins and peptides
56959	Leukocidin-like	7	Leukocidin-like	Membrane and cell surface proteins and peptides
56968	Lipovitellin-phosvitin complex; beta-sheet shell regions	3	Lipovitellin-phosvitin complex; beta-sheet shell regions	Membrane and cell surface proteins and peptides
56973	Aerolisin/ETX pore-forming domain	3	Aerolisin/ETX pore-forming domain	Membrane and cell surface proteins and peptides
56983	Viral glycoprotein, central and dimerisation domains	3	Viral glycoprotein, central and dimerisation domains	Membrane and cell surface proteins and peptides
57007	Heat-stable enterotoxin B	1	Toxic hairpin	Small proteins
57011	Neurotoxin B-IV	1	Toxic hairpin	Small proteins
57016	Plant lectins/antimicrobial peptides	3	Knottins (small inhibitors, toxins, lectins)	Small proteins
57027	Plant inhibitors of proteinases and amylases	3	Knottins (small inhibitors, toxins, lectins)	Small proteins
57038	Cyclotides	4	Knottins (small inhibitors, toxins, lectins)	Small proteins
57048	Gurmarin-like	3	Knottins (small inhibitors, toxins, lectins)	Small proteins
57055	Agouti-related protein	1	Knottins (small inhibitors, toxins, lectins)	Small proteins
57095	Scorpion toxin-like	31	Knottins (small inhibitors, toxins, lectins)	Small proteins
57180	Cellulose-binding domain	1	Knottins (small inhibitors, toxins, lectins)	Small proteins
57190	Colipase-like	4	Knottins (small inhibitors, toxins, lectins)	Small proteins
57247	Bowman-Birk inhibitor, BBI	2	Knottins (small inhibitors, toxins, lectins)	Small proteins
57256	Elafin-like	2	Knottins (small inhibitors, toxins, lectins)	Small proteins
57262	Leech antihemostatic proteins	5	Knottins (small inhibitors, toxins, lectins)	Small proteins
57277	Granulin repeat	2	Knottins (small inhibitors, toxins, lectins)	Small proteins
57283	PMP inhibitors	2	PMP inhibitors	Small proteins
57288	Midkine	2	Midkine	Small proteins
57296	Amb V allergen	1	Amb V allergen	Small proteins
57302	Snake toxin-like	18	Snake toxin-like	Small proteins
57362	BPTI-like	14	BPTI-like	Small proteins
57392	Defensin-like	17	Defensin-like	Small proteins
57414	Hairpin loop containing domain-like	3	Hairpin loop containing domain-like	Small proteins
57419	Neurotoxin III (ATX III)	1	Neurotoxin III (ATX III)	Small proteins
57424	LDL receptor-like module	5	LDL receptor-like module	Small proteins
57429	Crambin-like	2	Crambin-like	Small proteins
57440	Kringle-like	7	Kringle-like	Small proteins
57492	Trefoil	2	Trefoil/Plexin domain-like	Small proteins
57501	Cystine-knot cytokines	17	Cystine-knot cytokines	Small proteins
57535	Complement control module/SCR domain	32	Complement control module/SCR domain	Small proteins
57546	Crisp domain-like	3	Crisp domain-like	Small proteins
57552	Blood coagulation inhibitor (disintegrin)	3	Blood coagulation inhibitor (disintegrin)	Small proteins
57561	Methylamine dehydrogenase, L chain	1	Methylamine dehydrogenase, L chain	Small proteins
57567	Serine protease inhibitors	5	Serine protease inhibitors	Small proteins
57581	TB module/8-cys domain	3	TB module/8-cys domain	Small proteins
57586	TNF receptor-like	18	TNF receptor-like	Small proteins
57593	Heparin-binding domain from vascular endothelial growth factor	1	Heparin-binding domain from vascular endothelial growth factor	Small proteins
57598	Antifungal protein (AGAFP)	1	Antifungal protein (AGAFP)	Small proteins
57603	FnI-like domain	6	FnI-like domain	Small proteins
57610	Thyroglobulin type-1 domain	5	Thyroglobulin type-1 domain	Small proteins
57615	Type X cellulose binding domain, CBDX	1	Type X cellulose binding domain, CBDX	Small proteins
57620	Carboxypeptidase inhibitor	1	Carboxypeptidase inhibitor	Small proteins
57625	Invertebrate chitin-binding proteins	2	Invertebrate chitin-binding proteins	Small proteins
57630	GLA-domain	3	GLA-domain	Small proteins
57642	Cholecystokinin A receptor, N-domain	1	Cholecystokinin A receptor, N-domain	Small proteins
57647	HIV-1 VPU cytoplasmic domain	1	HIV-1 VPU cytoplasmic domain	Small proteins
57652	HIPIP (high potential iron protein)	6	HIPIP (high potential iron protein)	Small proteins
57662	Ferredoxin thioredoxin reductase (FTR), catalytic beta chain	1	Ferredoxin thioredoxin reductase (FTR), catalytic beta chain	Small proteins
57701	Zn2/Cys6 DNA-binding domain	5	Zn2/Cys6 DNA-binding domain	Small proteins
57756	Retrovirus zinc finger-like domains	4	Retrovirus zinc finger-like domains	Small proteins
57770	Methionyl-tRNA synthetase (MetRS), Zn-domain	1	Rubredoxin-like	Small proteins
57774	Microbial and mitochondrial ADK, insert \'zinc finger\' domain	3	Rubredoxin-like	Small proteins
57798	Casein kinase II beta subunit	1	Rubredoxin-like	Small proteins
57802	Rubredoxin-like	7	Rubredoxin-like	Small proteins
57821	Hypothetical protein MTH1184	1	Rubredoxin-like	Small proteins
57825	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain	2	Rubredoxin-like	Small proteins
57840	Ribosomal protein L36	1	Ribosomal protein L36	Small proteins
57845	B-box zinc-binding domain	7	B-box zinc-binding domain	Small proteins
57863	ArfGap/RecO-like zinc finger	2	ArfGap/RecO-like zinc finger	Small proteins
57879	Zinc domain conserved in yeast copper-regulated transcription factors	1	Zinc domain conserved in yeast copper-regulated transcription factors	Small proteins
57884	Ada DNA repair protein, N-terminal domain (N-Ada 10)	1	Ada DNA repair protein, N-terminal domain (N-Ada 10)	Small proteins
57889	Cysteine-rich domain	8	Cysteine-rich domain	Small proteins
57903	FYVE/PHD zinc finger	21	FYVE/PHD zinc finger	Small proteins
57917	Zn-binding domains of ADDBP	2	Zn-binding domains of ADDBP	Small proteins
57924	Inhibitor of apoptosis (IAP) repeat	5	Inhibitor of apoptosis (IAP) repeat	Small proteins
57933	TAZ domain	2	TAZ domain	Small proteins
57938	DnaJ/Hsp40 cysteine-rich domain	2	DnaJ/Hsp40 cysteine-rich domain	Small proteins
63380	Riboflavin synthase domain-like	23	Reductase/isomerase/elongation factor common domain	All beta proteins
63393	RNA polymerase subunits	2	Rubredoxin-like	Small proteins
63411	LuxS/MPP-like metallohydrolase	22	LuxS/MPP-like metallohydrolase	Alpha and beta proteins (a+b)
63418	MurE/MurF N-terminal domain	2	MurF and HprK N-domain-like	Alpha and beta proteins (a/b)
63433	Fumarylacetoacetate hydrolase, FAH, N-terminal domain	1	SH3-like barrel	All beta proteins
63446	Type I dockerin domain	6	Type I dockerin domain	All alpha proteins
63451	LEM domain	3	LEM/SAP HeH motif	All alpha proteins
63491	BAG domain	4	Spectrin repeat-like	All alpha proteins
63501	Frizzled cysteine-rich domain	2	Frizzled cysteine-rich domain	All alpha proteins
63515	Outer surface protein C (OspC)	1	Four-helical up-and-down bundle	All alpha proteins
63520	PTS-regulatory domain, PRD	2	PTS-regulatory domain, PRD	All alpha proteins
63562	RPB6/omega subunit-like	2	RPB6/omega subunit-like	All alpha proteins
63570	PABC (PABP) domain	5	PABP domain-like	All alpha proteins
63592	Flagellar transcriptional activator FlhD	1	Flagellar transcriptional activator FlhD	All alpha proteins
63600	Telomeric repeat binding factor (TRF) dimerisation domain	2	Telomeric repeat binding factor (TRF) dimerisation domain	All alpha proteins
63697	Olfactory marker protein	1	Olfactory marker protein	All beta proteins
63707	Ganglioside M2 (gm2) activator	1	Ganglioside M2 (gm2) activator	All beta proteins
63712	Nicotinic receptor ligand binding domain-like	6	Nicotinic receptor ligand binding domain-like	All beta proteins
63724	Cytolysin/lectin	2	Cytolysin/lectin	All beta proteins
63737	Zn aminopeptidase N-terminal domain	5	Zn aminopeptidase N-terminal domain	All beta proteins
63748	Tudor/PWWP/MBT	19	SH3-like barrel	All beta proteins
63763	SAND domain-like	3	SAND domain-like	Alpha and beta proteins (a+b)
63817	Sortase	3	Sortase	All beta proteins
63825	YWTD domain	2	6-bladed beta-propeller	All beta proteins
63829	Calcium-dependent phosphotriesterase	6	6-bladed beta-propeller	All beta proteins
63840	Ribonuclease domain of colicin E3	1	Ribonuclease domain of colicin E3	All beta proteins
63848	Cell-division inhibitor MinC, C-terminal domain	1	Single-stranded right-handed beta-helix	All beta proteins
63862	Thiamin pyrophosphokinase, substrate-binding domain	2	Double-stranded beta-helix	All beta proteins
63867	MoeA C-terminal domain-like	4	beta-clip	All beta proteins
63877	Methuselah ectodomain	1	Methuselah ectodomain	All beta proteins
63882	MoeA N-terminal region -like	3	MoeA N-terminal region -like	All beta proteins
63887	P-domain of calnexin/calreticulin	2	P-domain of calnexin/calreticulin	All beta proteins
63892	Pyridoxine 5\'-phosphate synthase	2	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
63965	Precorrin-8X methylmutase CbiC/CobH	2	Flavodoxin-like	Alpha and beta proteins (a/b)
63992	Dipeptide transport protein	1	Dipeptide transport protein	Alpha and beta proteins (a/b)
63999	Thiamin pyrophosphokinase, catalytic domain	2	Thiamin pyrophosphokinase, catalytic domain	Alpha and beta proteins (a/b)
64005	Undecaprenyl diphosphate synthase	8	Undecaprenyl diphosphate synthase	Alpha and beta proteins (a/b)
64043	Cell-division inhibitor MinC, N-terminal domain	1	Cell-division inhibitor MinC, N-terminal domain	Alpha and beta proteins (a/b)
64076	MTH938-like	3	MTH938-like	Alpha and beta proteins (a/b)
64153	YjeF N-terminal domain-like	2	YjeF N-terminal domain-like	Alpha and beta proteins (a/b)
64158	2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain	1	2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain	Alpha and beta proteins (a/b)
64167	SurE-like	2	SurE-like	Alpha and beta proteins (a/b)
64182	DHH phosphoesterases	3	DHH phosphoesterases	Alpha and beta proteins (a/b)
64210	Head-to-tail joining protein W, gpW	1	gpW/XkdW-like	Alpha and beta proteins (a+b)
64234	Photosystem I subunit PsaD	1	Photosystem I subunit PsaD	Alpha and beta proteins (a+b)
64263	Prokaryotic ribosomal protein L17	2	Prokaryotic ribosomal protein L17	Alpha and beta proteins (a+b)
64268	PX domain	13	PX domain	Alpha and beta proteins (a+b)
64288	Chorismate lyase-like	16	Chorismate lyase-like	Alpha and beta proteins (a+b)
64307	SirA-like	4	IF3-like	Alpha and beta proteins (a+b)
64356	SNARE-like	7	Profilin-like	Alpha and beta proteins (a+b)
64376	YlxR-like	1	YlxR-like	Alpha and beta proteins (a+b)
64383	Cell-division protein ZipA, C-terminal domain	1	TBP-like	Alpha and beta proteins (a+b)
64397	Hsp33 domain	3	Hsp33 domain	Alpha and beta proteins (a+b)
64438	CNF1/YfiH-like putative cysteine hydrolases	5	CNF1/YfiH-like putative cysteine hydrolases	Alpha and beta proteins (a+b)
64449	YopH tyrosine phosphatase N-terminal domain	1	YopH tyrosine phosphatase N-terminal domain	Alpha and beta proteins (a+b)
64465	Outer capsid protein sigma 3	1	Outer capsid protein sigma 3	Alpha and beta proteins (a+b)
64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	6	beta and beta-prime subunits of DNA dependent RNA-polymerase	Multi-domain proteins (alpha and beta)
64496	DNA-binding domain of intron-encoded endonucleases	2	DNA-binding domain of intron-encoded endonucleases	Alpha and beta proteins (a+b)
64518	Phase 1 flagellin	1	Phase 1 flagellin	Multi-domain proteins (alpha and beta)
64546	Satiety factor CART (cocaine and amphetamine regulated transcript)	1	Knottins (small inhibitors, toxins, lectins)	Small proteins
64571	Cellulose docking domain, dockering	1	Cellulose docking domain, dockering	Small proteins
64586	C-terminal domain of ProRS	3	IF3-like	Alpha and beta proteins (a+b)
68906	SAP domain	6	LEM/SAP HeH motif	All alpha proteins
68912	Rho N-terminal domain-like	3	LEM/SAP HeH motif	All alpha proteins
68918	Recombination endonuclease VII, C-terminal and dimerization domains	1	LEM/SAP HeH motif	All alpha proteins
68923	PEP carboxykinase N-terminal domain	4	PEP carboxykinase N-terminal domain	Alpha and beta proteins (a/b)
68930	Protein-L-isoaspartyl O-methyltransferase, C-terminal domain	1	Protein-L-isoaspartyl O-methyltransferase, C-terminal domain	Alpha and beta proteins (a+b)
68989	Hemolysin expression modulating protein HHA	2	Open three-helical up-and-down bundle	All alpha proteins
68993	FAT domain of focal adhesion kinase	1	Four-helical up-and-down bundle	All alpha proteins
69000	FAD-dependent thiol oxidase	3	Four-helical up-and-down bundle	All alpha proteins
69008	RecG, N-terminal domain	1	Four-helical up-and-down bundle	All alpha proteins
69012	alpha-ketoacid dehydrogenase kinase, N-terminal domain	2	Bromodomain-like	All alpha proteins
69025	Hypothetical protein MTH865	1	EF Hand-like	All alpha proteins
69036	Bcr-Abl oncoprotein oligomerization domain	1	Bcr-Abl oncoprotein oligomerization domain	All alpha proteins
69047	Hypothetical protein YjbJ	1	SAM domain-like	All alpha proteins
69055	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain	2	Left-handed superhelix	All alpha proteins
69060	Arp2/3 complex 21 kDa subunit ARPC3	1	Arp2/3 complex 21 kDa subunit ARPC3	All alpha proteins
69065	RNase III domain-like	4	RNase III domain-like	All alpha proteins
69070	Anti-sigma factor AsiA	1	Anti-sigma factor AsiA	All alpha proteins
69075	Glutamyl tRNA-reductase dimerization domain	1	Glutamyl tRNA-reductase dimerization domain	All alpha proteins
69099	Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain	1	alpha-alpha superhelix	All alpha proteins
69103	Arp2/3 complex 16 kDa subunit ARPC5	1	alpha-alpha superhelix	All alpha proteins
69118	AhpD-like	9	AhpD-like	All alpha proteins
69125	Nuclear receptor coactivator interlocking domain	2	Nuclear receptor coactivator interlocking domain	All alpha proteins
69131	Quinohemoprotein amine dehydrogenase C chain	1	Non-globular all-alpha subunits of globular proteins	All alpha proteins
69179	Integrin domains	4	Immunoglobulin-like beta-sandwich	All beta proteins
69189	Penicillin-binding protein associated domain	3	Penicillin-binding protein associated domain	All beta proteins
69203	Nucleoplasmin-like core domain	3	Nucleoplasmin-like/VP (viral coat and capsid proteins)	All beta proteins
69255	gp5 N-terminal domain-like	2	OB-fold	All beta proteins
69287	Urease metallochaperone UreE, N-terminal domain	2	Urease metallochaperone UreE, N-terminal domain	All beta proteins
69298	Quinohemoprotein amine dehydrogenase A chain, domain 3	2	Streptavidin-like	All beta proteins
69304	Tricorn protease N-terminal domain	1	6-bladed beta-propeller	All beta proteins
69318	Integrin alpha N-terminal domain	1	7-bladed beta-propeller	All beta proteins
69322	Tricorn protease domain 2	1	7-bladed beta-propeller	All beta proteins
69336	Alpha subunit of glutamate synthase, C-terminal domain	1	Single-stranded right-handed beta-helix	All beta proteins
69340	C-terminal domain of adenylylcyclase associated protein	3	Single-stranded right-handed beta-helix	All beta proteins
69360	Cell wall binding repeat	2	beta-hairpin stack	All beta proteins
69369	Cloacin translocation domain	2	Cloacin translocation domain	All beta proteins
69500	DTD-like	5	DTD-like	Alpha and beta proteins (a/b)
69572	Activating enzymes of the ubiquitin-like proteins	4	Activating enzymes of the ubiquitin-like proteins	Alpha and beta proteins (a/b)
69593	Glycerol-3-phosphate (1)-acyltransferase	1	Glycerol-3-phosphate (1)-acyltransferase	Alpha and beta proteins (a/b)
69618	HemD-like	2	HemD-like	Alpha and beta proteins (a/b)
69635	Type III secretory system chaperone-like	11	Secretion chaperone-like	Alpha and beta proteins (a+b)
69645	Arp2/3 complex subunits	3	Secretion chaperone-like	Alpha and beta proteins (a+b)
69652	DNA-binding C-terminal domain of the transcription factor MotA	1	MotA C-terminal domain-like	Alpha and beta proteins (a+b)
69687	Integrin beta tail domain	1	Integrin beta tail domain	Alpha and beta proteins (a+b)
69695	SRP19	4	SRP19	Alpha and beta proteins (a+b)
69705	Transcription factor NusA, N-terminal domain	2	Transcription factor NusA, N-terminal domain	Alpha and beta proteins (a+b)
69721	DsrC, the gamma subunit of dissimilatory sulfite reductase	1	DsrC, the gamma subunit of dissimilatory sulfite reductase	Alpha and beta proteins (a+b)
69737	Urease metallochaperone UreE, C-terminal domain	2	Ferredoxin-like	Alpha and beta proteins (a+b)
69742	Glutamyl tRNA-reductase catalytic, N-terminal domain	1	Ferredoxin-like	Alpha and beta proteins (a+b)
69754	Ribosome binding protein Y (YfiA homologue)	5	Ribosome binding protein Y (YfiA homologue)	Alpha and beta proteins (a+b)
69761	GTP cyclohydrolase I feedback regulatory protein, GFRP	1	GTP cyclohydrolase I feedback regulatory protein, GFRP	Alpha and beta proteins (a+b)
69765	IpsF-like	3	Bacillus chorismate mutase-like	Alpha and beta proteins (a+b)
69786	YggU-like	2	YggU-like	Alpha and beta proteins (a+b)
69796	Thymidylate synthase-complementing protein Thy1	2	Thymidylate synthase-complementing protein Thy1	Alpha and beta proteins (a+b)
69819	MTH1598-like	2	MTH1598-like	Alpha and beta proteins (a+b)
69848	LCCL domain	1	LCCL domain	Alpha and beta proteins (a+b)
69864	Argininosuccinate synthetase, C-terminal domain	4	Argininosuccinate synthetase, C-terminal domain	Alpha and beta proteins (a+b)
69903	NSP3 homodimer	1	NSP3 homodimer	Multi-domain proteins (alpha and beta)
69908	Membrane penetration protein mu1	1	Membrane penetration protein mu1	Multi-domain proteins (alpha and beta)
69917	OMPT-like	2	Transmembrane beta-barrels	Membrane and cell surface proteins and peptides
69922	Head and neck region of the ectodomain of NDV fusion glycoprotein	1	Head and neck region of the ectodomain of NDV fusion glycoprotein	Membrane and cell surface proteins and peptides
69964	Pheromone ER-23	1	Pheromone ER-23	Small proteins
74653	TolA/TonB C-terminal domain	3	TolA/TonB C-terminal domain	Alpha and beta proteins (a+b)
74731	Ribosomal protein L20	1	PABP domain-like	All alpha proteins
74748	Variable surface antigen VlsE	1	Variable surface antigen VlsE	All alpha proteins
74778	Aconitase B, N-terminal domain	1	alpha-alpha superhelix	All alpha proteins
74784	Translin	1	alpha-alpha superhelix	All alpha proteins
74788	Cullin repeat-like	6	alpha-alpha superhelix	All alpha proteins
74853	Lamin A/C globular tail domain	1	Immunoglobulin-like beta-sandwich	All beta proteins
74863	Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)	2	Immunoglobulin-like beta-sandwich	All beta proteins
74877	Major surface antigen p30, SAG1	2	Cupredoxin-like	All beta proteins
74914	V-region of surface antigen I/II (SA I/II, PAC)	1	Supersandwich	All beta proteins
74924	Cap-Gly domain	7	SH3-like barrel	All beta proteins
74942	YhbC-like, C-terminal domain	1	Sm-like fold	All beta proteins
74982	Small protein B (SmpB)	1	Small protein B (SmpB)	All beta proteins
75001	Dipeptidyl peptidase I (cathepsin C), exclusion domain	1	Streptavidin-like	All beta proteins
75005	Arabinanase/levansucrase/invertase	8	5-bladed beta-propeller	All beta proteins
75011	3-carboxy-cis,cis-mucoante lactonizing enzyme	1	7-bladed beta-propeller	All beta proteins
75098	Monomethylamine methyltransferase MtmB	1	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
75138	HprK N-terminal domain-like	3	MurF and HprK N-domain-like	Alpha and beta proteins (a/b)
75169	DsrEFH-like	9	DsrEFH-like	Alpha and beta proteins (a/b)
75181	Hypothetical protein MTH777 (MT0777)	1	Hypothetical protein MTH777 (MT0777)	Alpha and beta proteins (a/b)
75217	alpha/beta knot	20	alpha/beta knot	Alpha and beta proteins (a/b)
75304	Amidase signature (AS) enzymes	4	Amidase signature (AS) enzymes	Alpha and beta proteins (a/b)
75347	Rotavirus NSP2 fragment, C-terminal domain	2	HIT-like	Alpha and beta proteins (a+b)
75399	Plakin repeat	2	beta-hairpin-alpha-hairpin repeat	Alpha and beta proteins (a+b)
75404	VSV matrix protein	1	VSV matrix protein	Alpha and beta proteins (a+b)
75412	Hypothetical protein MTH1880	1	Hypothetical protein MTH1880	Alpha and beta proteins (a+b)
75420	YhbC-like, N-terminal domain	1	Alpha-lytic protease prodomain-like	Alpha and beta proteins (a+b)
75445	D-ribose-5-phosphate isomerase (RpiA), lid domain	2	Ferredoxin-like	Alpha and beta proteins (a+b)
75471	YhbY-like	2	IF3-like	Alpha and beta proteins (a+b)
75500	Putative transcriptional regulator TM1602, C-terminal domain	2	HPr-like	Alpha and beta proteins (a+b)
75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors	1	Profilin-like	Alpha and beta proteins (a+b)
75553	Smc hinge domain	2	Smc hinge domain	Alpha and beta proteins (a+b)
75569	Archaeal IMP cyclohydrolase PurO	1	Ntn hydrolase-like	Alpha and beta proteins (a+b)
75574	Rotavirus NSP2 fragment, N-terminal domain	2	Rotavirus NSP2 fragment, N-terminal domain	Alpha and beta proteins (a+b)
75615	Siroheme synthase middle domains-like	2	Siroheme synthase middle domains-like	Multi-domain proteins (alpha and beta)
75620	Release factor	2	Release factor	Multi-domain proteins (alpha and beta)
75625	YebC-like	3	YebC-like	Multi-domain proteins (alpha and beta)
75632	Cullin homology domain	2	Cullin homology domain	Multi-domain proteins (alpha and beta)
75689	Zinc-binding domain of translation initiation factor 2 beta	1	Zinc-binding domain of translation initiation factor 2 beta	Small proteins
81271	TGS-like	5	beta-Grasp (ubiquitin-like)	Alpha and beta proteins (a+b)
81273	H-NS histone-like proteins	2	H-NS histone-like proteins	All alpha proteins
81277	C-terminal domain of mollusc hemocyanin	1	C-terminal domain of mollusc hemocyanin	All beta proteins
81298	Adenylylcyclase toxin (the edema factor)	1	Adenylylcyclase toxin (the edema factor)	Multi-domain proteins (alpha and beta)
81301	Nucleotidyltransferase	29	Nucleotidyltransferase	Alpha and beta proteins (a+b)
81321	Class A G protein-coupled receptor (GPCR)-like	20	Class A G protein-coupled receptor (GPCR)-like	Membrane and cell surface proteins and peptides
81327	Small-conductance potassium channel	1	Small-conductance potassium channel	Membrane and cell surface proteins and peptides
81330	Gated mechanosensitive channel	1	Gated mechanosensitive channel	Membrane and cell surface proteins and peptides
81333	Rotary ATPase ring subunits	3	Transmembrane helix hairpin	Membrane and cell surface proteins and peptides
81336	F1F0 ATP synthase subunit A	1	F1F0 ATP synthase subunit A	Membrane and cell surface proteins and peptides
81338	Aquaporin-like	7	Aquaporin-like	Membrane and cell surface proteins and peptides
81340	Clc chloride channel	1	Clc chloride channel	Membrane and cell surface proteins and peptides
81342	Transmembrane di-heme cytochromes	3	Heme-binding four-helical bundle	Membrane and cell surface proteins and peptides
81343	Fumarate reductase respiratory complex transmembrane subunits	7	Heme-binding four-helical bundle	Membrane and cell surface proteins and peptides
81345	ABC transporter involved in vitamin B12 uptake, BtuC	1	ABC transporter involved in vitamin B12 uptake, BtuC	Membrane and cell surface proteins and peptides
81382	Skp1 dimerisation domain-like	1	Skp1 dimerisation domain-like	All alpha proteins
81383	F-box domain	4	F-box domain	All alpha proteins
81406	Mitochondrial cytochrome c oxidase subunit IV	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81411	Mitochondrial cytochrome c oxidase subunit VIa	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81415	Mitochondrial cytochrome c oxidase subunit VIc	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81419	Mitochondrial cytochrome c oxidase subunit VIIa	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81423	Mitochondrial cytochrome c oxidase subunit VIIb	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81427	Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81431	Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81442	Cytochrome c oxidase subunit I-like	2	Cytochrome c oxidase subunit I-like	Membrane and cell surface proteins and peptides
81452	Cytochrome c oxidase subunit III-like	2	Cytochrome c oxidase subunit III-like	Membrane and cell surface proteins and peptides
81464	Cytochrome c oxidase subunit II-like, transmembrane region	4	Transmembrane helix hairpin	Membrane and cell surface proteins and peptides
81469	Bacterial aa3 type cytochrome c oxidase subunit IV	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81473	Bacterial ba3 type cytochrome c oxidase subunit IIa	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81483	Bacterial photosystem II reaction centre, L and M subunits	4	Bacterial photosystem II reaction centre, L and M subunits	Membrane and cell surface proteins and peptides
81490	Photosystem II reaction centre subunit H, transmembrane region	3	Single transmembrane helix	Membrane and cell surface proteins and peptides
81496	Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81502	ISP transmembrane anchor	4	Single transmembrane helix	Membrane and cell surface proteins and peptides
81508	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	2	Single transmembrane helix	Membrane and cell surface proteins and peptides
81514	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	2	Single transmembrane helix	Membrane and cell surface proteins and peptides
81518	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81524	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	2	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Membrane and cell surface proteins and peptides
81531	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	2	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Membrane and cell surface proteins and peptides
81536	Subunit III of photosystem I reaction centre, PsaF	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81540	Subunit VIII of photosystem I reaction centre, PsaI	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81544	Subunit IX of photosystem I reaction centre, PsaJ	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81548	Subunit XII of photosystem I reaction centre, PsaM	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81552	Subunit PsaX of photosystem I reaction centre	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81558	Photosystem I subunits PsaA/PsaB	1	Photosystem I subunits PsaA/PsaB	Membrane and cell surface proteins and peptides
81563	Photosystem I reaction center subunit X, PsaK	1	Photosystem I reaction center subunit X, PsaK	Membrane and cell surface proteins and peptides
81568	Photosystem I reaction center subunit XI, PsaL	2	Photosystem I reaction center subunit XI, PsaL	Membrane and cell surface proteins and peptides
81573	F1F0 ATP synthase subunit B, membrane domain	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81585	PsbU/PolX domain-like	4	SAM domain-like	All alpha proteins
81593	Nucleotidyltransferase substrate binding subunit/domain	6	Four-helical up-and-down bundle	All alpha proteins
81597	Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
81601	Protein serine/threonine phosphatase 2C, C-terminal domain	1	Another 3-helical bundle	All alpha proteins
81606	PP2C-like	7	PP2C-like	Alpha and beta proteins (a+b)
81624	N-terminal domain of MutM-like DNA repair proteins	6	N-terminal domain of MutM-like DNA repair proteins	All beta proteins
81631	PAP/OAS1 substrate-binding domain	6	PAP/OAS1 substrate-binding domain	All alpha proteins
81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	2	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Membrane and cell surface proteins and peptides
81653	Metal cation-transporting ATPase, actuator domain A	2	Double-stranded beta-helix	All beta proteins
81660	Metal cation-transporting ATPase, ATP-binding domain N	4	Metal cation-transporting ATPase, ATP-binding domain N	Alpha and beta proteins (a+b)
81665	Metal cation-transporting ATPase, transmembrane domain	2	Metal cation-transporting ATPase, transmembrane domain	Membrane and cell surface proteins and peptides
81698	FF domain	6	Another 3-helical bundle	All alpha proteins
81710	Plasmid maintenance system epsilon/zeta, antidote epsilon subunit	1	immunoglobulin/albumin-binding domain-like	All alpha proteins
81730	beta-catenin-interacting protein ICAT	1	beta-catenin-interacting protein ICAT	All alpha proteins
81736	Group V grass pollen allergen	2	Four-helical up-and-down bundle	All alpha proteins
81761	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain	1	CH domain-like	All alpha proteins
81767	Pre-protein crosslinking domain of SecA	1	Pre-protein crosslinking domain of SecA	All alpha proteins
81778	Crustacean CHH/MIH/GIH neurohormone	1	Crustacean CHH/MIH/GIH neurohormone	All alpha proteins
81783	C-terminal domain of DFF45/ICAD (DFF-C domain)	1	C-terminal domain of DFF45/ICAD (DFF-C domain)	All alpha proteins
81790	Myosin phosphatase inhibitor 17kDa protein, CPI-17	1	Myosin phosphatase inhibitor 17kDa protein, CPI-17	All alpha proteins
81799	Putative methyltransferase TM0872, insert domain	1	SAM domain-like	All alpha proteins
81811	Helical domain of Sec23/24	2	ERP29 C domain-like	All alpha proteins
81822	RuBisCo LSMT C-terminal, substrate-binding domain	1	RuBisCo LSMT C-terminal, substrate-binding domain	All alpha proteins
81832	SopE-like GEF domain	2	SopE-like GEF domain	All alpha proteins
81837	BEACH domain	1	BEACH domain	All alpha proteins
81853	Family 10 polysaccharide lyase	2	alpha/alpha toroid	All alpha proteins
81872	BRCA2 helical domain	1	BRCA2 helical domain	All alpha proteins
81878	BRCA2 tower domain	1	BRCA2 tower domain	All alpha proteins
81886	Helical scaffold and wing domains of SecA	3	Helical scaffold and wing domains of SecA	All alpha proteins
81891	Poly A polymerase C-terminal region-like	3	Poly A polymerase C-terminal region-like	All alpha proteins
81901	HCP-like	2	alpha-alpha superhelix	All alpha proteins
81923	Double Clp-N motif	4	Double Clp-N motif	All alpha proteins
81930	Orange carotenoid protein, N-terminal domain	1	Orange carotenoid protein, N-terminal domain	All alpha proteins
81935	N-terminal domain of bifunctional PutA protein	1	N-terminal domain of bifunctional PutA protein	All alpha proteins
81982	Antigen MPT63/MPB63 (immunoprotective extracellular protein)	1	Immunoglobulin-like beta-sandwich	All beta proteins
81986	Tp47 lipoprotein, middle and C-terminal domains	2	Immunoglobulin-like beta-sandwich	All beta proteins
81995	beta-sandwich domain of Sec23/24	2	Common fold of diphtheria toxin/transcription factors/cytochrome f	All beta proteins
82004	N-utilization substance G protein NusG, insert domain	1	N-utilization substance G protein NusG, insert domain	All beta proteins
82026	Calcium-mediated lectin	1	Calcium-mediated lectin	All beta proteins
82046	Viral chemokine binding protein m3	1	Viral chemokine binding protein m3	All beta proteins
82051	Obg GTP-binding protein N-terminal domain	1	Obg-fold	All beta proteins
82057	Prokaryotic SH3-related domain	5	SH3-like barrel	All beta proteins
82061	BAH domain	3	SH3-like barrel	All beta proteins
82093	Heme chaperone CcmE	1	OB-fold	All beta proteins
82109	MIR domain	5	beta-Trefoil	All beta proteins
82114	Riboflavin kinase-like	6	Reductase/isomerase/elongation factor common domain	All beta proteins
82153	FAS1 domain	3	FAS1 domain	All beta proteins
82171	DPP6 N-terminal domain-like	2	8-bladed beta-propeller	All beta proteins
82185	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	1	open-sided beta-meander	All beta proteins
82199	SET domain	8	beta-clip	All beta proteins
82215	C-terminal autoproteolytic domain of nucleoporin nup98	1	C-terminal autoproteolytic domain of nucleoporin nup98	All beta proteins
82220	Tp47 lipoprotein, N-terminal domain	1	Tp47 lipoprotein, N-terminal domain	All beta proteins
82282	Homocysteine S-methyltransferase	2	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
82317	Swiveling domain of dehydratase reactivase alpha subunit	1	The 'swivelling' beta/beta/alpha domain	Alpha and beta proteins (a/b)
82544	GckA/TtuD-like	1	GckA/TtuD-like	Alpha and beta proteins (a/b)
82549	DAK1/DegV-like	16	DAK1/DegV-like	Alpha and beta proteins (a/b)
82602	Nuclease A inhibitor (NuiA)	1	Nuclease A inhibitor (NuiA)	Alpha and beta proteins (a+b)
82607	YbaB-like	3	YbaB-like	Alpha and beta proteins (a+b)
82615	Polo-box domain	4	Polo-box domain	Alpha and beta proteins (a+b)
82649	SufE/NifU	9	SufE/NifU	Alpha and beta proteins (a+b)
82653	Probable GTPase Der, C-terminal domain	1	Alpha-lytic protease prodomain-like	Alpha and beta proteins (a+b)
82657	BolA-like	2	Alpha-lytic protease prodomain-like	Alpha and beta proteins (a+b)
82671	SEA domain	1	Ferredoxin-like	Alpha and beta proteins (a+b)
82679	N-utilization substance G protein NusG, N-terminal domain	3	Ferredoxin-like	Alpha and beta proteins (a+b)
82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain	1	Ferredoxin-like	Alpha and beta proteins (a+b)
82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains	4	Ferredoxin-like	Alpha and beta proteins (a+b)
82697	PurS-like	5	PurS-like	Alpha and beta proteins (a+b)
82704	AlbA-like	4	IF3-like	Alpha and beta proteins (a+b)
82708	R3H domain	3	IF3-like	Alpha and beta proteins (a+b)
82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains	2	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains	Alpha and beta proteins (a+b)
82754	C-terminal, gelsolin-like domain of Sec23/24	2	Gelsolin-like	Alpha and beta proteins (a+b)
82771	GIY-YIG endonuclease	1	GIY-YIG endonuclease	Alpha and beta proteins (a+b)
82784	OsmC-like	9	OsmC-like	Alpha and beta proteins (a+b)
82808	Replication modulator SeqA, C-terminal DNA-binding domain	1	Replication modulator SeqA, C-terminal DNA-binding domain	Alpha and beta proteins (a+b)
82829	MesJ substrate recognition domain-like	2	MesJ substrate recognition domain-like	Alpha and beta proteins (a+b)
82856	L-A virus major coat protein	1	L-A virus major coat protein	Multi-domain proteins (alpha and beta)
82861	Mechanosensitive channel protein MscS (YggB), transmembrane region	1	Mechanosensitive channel protein MscS (YggB), transmembrane region	Membrane and cell surface proteins and peptides
82866	Multidrug efflux transporter AcrB transmembrane domain	2	Multidrug efflux transporter AcrB transmembrane domain	Membrane and cell surface proteins and peptides
82895	TSP-1 type 1 repeat	1	TSP-1 type 1 repeat	Small proteins
82910	Apical membrane antigen 1	2	Apical membrane antigen 1	Small proteins
82919	Zn-finger domain of Sec23/24	2	Rubredoxin-like	Small proteins
82927	Cysteine-rich DNA binding domain, (DM domain)	1	Cysteine-rich DNA binding domain, (DM domain)	Small proteins
88645	ssDNA viruses	7	Nucleoplasmin-like/VP (viral coat and capsid proteins)	All beta proteins
88648	Group I dsDNA viruses	3	Nucleoplasmin-like/VP (viral coat and capsid proteins)	All beta proteins
88650	Satellite viruses	3	Nucleoplasmin-like/VP (viral coat and capsid proteins)	All beta proteins
88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	8	DNA/RNA-binding 3-helical bundle	All alpha proteins
88723	PIN domain-like	12	PIN domain-like	Alpha and beta proteins (a/b)
88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	3	Dodecin subunit-like	Alpha and beta proteins (a+b)
88802	Pre-PUA domain	5	Cystatin-like	Alpha and beta proteins (a+b)
88874	Receptor-binding domain of short tail fibre protein gp12	1	Receptor-binding domain of short tail fibre protein gp12	Alpha and beta proteins (a+b)
88946	Sigma2 domain of RNA polymerase sigma factors	5	Sigma2 domain of RNA polymerase sigma factors	All alpha proteins
89009	GAT-like domain	4	Spectrin repeat-like	All alpha proteins
89028	Cobalamin adenosyltransferase-like	6	Ferritin-like	All alpha proteins
89043	Soluble domain of poliovirus core protein 3a	1	Soluble domain of poliovirus core protein 3a	All alpha proteins
89064	Replisome organizer (g39p helicase loader/inhibitor protein)	1	Replisome organizer (g39p helicase loader/inhibitor protein)	All alpha proteins
89069	N-terminal, cytoplasmic domain of anti-sigmaE factor RseA	1	N-terminal, cytoplasmic domain of anti-sigmaE factor RseA	All alpha proteins
89082	Antibiotic binding domain of TipA-like multidrug resistance regulators	1	Antibiotic binding domain of TipA-like multidrug resistance regulators	All alpha proteins
89095	GatB/YqeY motif	4	GatB/YqeY motif	All alpha proteins
89124	Nop domain	4	Nop domain	All alpha proteins
89155	TorD-like	4	TorD-like	All alpha proteins
89162	Gametocyte protein Pfg27	1	Gametocyte protein Pfg27	All alpha proteins
89232	Hypothetical protein TM1070	2	Hypothetical protein TM1070	All beta proteins
89360	HesB-like domain	6	HesB-like domain	All beta proteins
89372	Fucose-specific lectin	2	6-bladed beta-propeller	All beta proteins
89392	Prokaryotic lipoproteins and lipoprotein localization factors	6	LolA-like prokaryotic lipoproteins and lipoprotein localization factors	All beta proteins
89428	Adsorption protein p2	1	Adsorption protein p2	All beta proteins
89433	Baseplate structural protein gp8	1	Baseplate structural protein gp8	All beta proteins
89442	Hypothetical protein YojF	1	Hypothetical protein YojF	All beta proteins
89447	AbrB/MazE/MraZ-like	3	Double-split beta-barrel	All beta proteins
89550	PHP domain-like	3	7-stranded beta/alpha barrel	Alpha and beta proteins (a/b)
89562	RraA-like	1	The 'swivelling' beta/beta/alpha domain	Alpha and beta proteins (a/b)
89623	Ribose/Galactose isomerase RpiB/AlsB	6	Ribose/Galactose isomerase RpiB/AlsB	Alpha and beta proteins (a/b)
89733	L-sulfolactate dehydrogenase-like	9	L-sulfolactate dehydrogenase-like	Alpha and beta proteins (a/b)
89796	CoA-transferase family III (CaiB/BaiF)	6	CoA-transferase family III (CaiB/BaiF)	Alpha and beta proteins (a/b)
89807	Dodecin-like	2	Dodecin subunit-like	Alpha and beta proteins (a+b)
89811	Amyloid beta a4 protein copper binding domain (domain 2)	2	Dodecin subunit-like	Alpha and beta proteins (a+b)
89817	Mago nashi protein	1	Mago nashi protein	Alpha and beta proteins (a+b)
89837	Doublecortin (DC)	1	beta-Grasp (ubiquitin-like)	Alpha and beta proteins (a+b)
89872	Inhibitor of vertebrate lysozyme, Ivy	2	Inhibitor of vertebrate lysozyme, Ivy	Alpha and beta proteins (a+b)
89890	Proguanylin	1	Proguanylin	Alpha and beta proteins (a+b)
89895	FYSH domain	2	FYSH domain	Alpha and beta proteins (a+b)
89915	DNA-binding protein Tfx	1	DNA-binding protein Tfx	Alpha and beta proteins (a+b)
89919	Ribosome-binding factor A, RbfA	5	Alpha-lytic protease prodomain-like	Alpha and beta proteins (a+b)
89942	eEF1-gamma domain	1	Ferredoxin-like	Alpha and beta proteins (a+b)
89946	Hypothetical protein VC0424	1	Ferredoxin-like	Alpha and beta proteins (a+b)
89957	MTH1187/YkoF-like	6	Ferredoxin-like	Alpha and beta proteins (a+b)
89963	YajQ-like	2	Ferredoxin-like	Alpha and beta proteins (a+b)
89975	Hypothetical protein Yml108w	1	Hypothetical protein Yml108w	Alpha and beta proteins (a+b)
90002	Hypothetical protein YjiA, C-terminal domain	1	Hypothetical protein YjiA, C-terminal domain	Alpha and beta proteins (a+b)
90064	Hypothetical protein TM0875	1	Hypothetical protein TM0875	Alpha and beta proteins (a+b)
90073	GCM domain	1	GCM domain	Alpha and beta proteins (a+b)
90096	Subunits of heterodimeric actin filament capping protein Capz	2	Subunits of heterodimeric actin filament capping protein Capz	Multi-domain proteins (alpha and beta)
90112	Neurotransmitter-gated ion-channel transmembrane pore	2	Neurotransmitter-gated ion-channel transmembrane pore	Membrane and cell surface proteins and peptides
90148	DPY module	1	Knottins (small inhibitors, toxins, lectins)	Small proteins
90183	Mollusk pheromone	1	Mollusk pheromone	Small proteins
90188	Somatomedin B domain	1	Somatomedin B domain	Small proteins
90193	Notch domain	1	Notch domain	Small proteins
90209	Ran binding protein zinc finger-like	7	Rubredoxin-like	Small proteins
90229	CCCH zinc finger	6	CCCH zinc finger	Small proteins
90234	Zinc finger domain of DNA polymerase-alpha	1	Zinc finger domain of DNA polymerase-alpha	Small proteins
100895	Kazal-type serine protease inhibitors	13	Kazal-type serine protease inhibitors	Small proteins
100897	Plant proteinase inhibitors	2	Plant proteinase inhibitors	Small proteins
100909	IP3 receptor type 1 binding core, domain 2	1	alpha-alpha superhelix	All alpha proteins
100910	Chemosensory protein Csp2	1	alpha-alpha superhelix	All alpha proteins
100920	Heat shock protein 70kD (HSP70), peptide-binding domain	1	Heat shock protein 70kD (HSP70), peptide-binding domain	All beta proteins
100934	Heat shock protein 70kD (HSP70), C-terminal subdomain	3	immunoglobulin/albumin-binding domain-like	All alpha proteins
100939	SPOC domain-like	3	SPOC domain-like	All beta proteins
100957	Dimerization cofactor of HNF-1 alpha	1	Dimerisation interlock	All alpha proteins
100966	Translation initiation factor 2 beta, aIF2beta, N-terminal domain	2	Ribosome binding domain-like	Alpha and beta proteins (a+b)
100985	Sporulation inhibitor Sda	1	Long alpha-hairpin	All alpha proteins
101059	B-form DNA mimic Ocr	1	Another 3-helical bundle	All alpha proteins
101082	Typo IV secretion system protein TraC	1	immunoglobulin/albumin-binding domain-like	All alpha proteins
101089	Phosphoprotein XD domain	2	immunoglobulin/albumin-binding domain-like	All alpha proteins
101094	Staphylocoagulase	2	immunoglobulin/albumin-binding domain-like	All alpha proteins
101112	Oxygen-evolving enhancer protein 3,	1	Four-helical up-and-down bundle	All alpha proteins
101116	Flagellar export chaperone FliS	3	Four-helical up-and-down bundle	All alpha proteins
101125	Colicin D immunity protein	1	Four-helical up-and-down bundle	All alpha proteins
101148	Plant invertase/pectin methylesterase inhibitor	3	Bromodomain-like	All alpha proteins
101152	Mob1/phocein	1	Bromodomain-like	All alpha proteins
101156	Nonstructural protein ns2, Nep, M1-binding domain	1	ROP-like	All alpha proteins
101160	Dimerisation domain of CENP-B	1	ROP-like	All alpha proteins
101166	Docking domain A of the erythromycin polyketide synthase (DEBS)	1	Dimerisation interlock	All alpha proteins
101173	Docking domain B of the erythromycin polyketide synthase (DEBS)	1	HLH-like	All alpha proteins
101215	KaiA/RbsU domain	2	KaiA/RbsU domain	All alpha proteins
101224	HAND domain of the nucleosome remodeling ATPase ISWI	1	HAND domain of the nucleosome remodeling ATPase ISWI	All alpha proteins
101233	PWI domain	1	PWI domain	All alpha proteins
101238	XPC-binding domain	2	XPC-binding domain-like	All alpha proteins
101257	Flavivirus capsid protein C	2	Flavivirus capsid protein C	All alpha proteins
101262	Methenyltetrahydrofolate cyclohydrolase-like	1	Methenyltetrahydrofolate cyclohydrolase-like	All alpha proteins
101278	N-terminal domain of adenylylcyclase associated protein, CAP	1	N-terminal domain of adenylylcyclase associated protein, CAP	All alpha proteins
101283	GRIP domain	1	GRIP domain	All alpha proteins
101288	L27 domain	6	L27 domain	All alpha proteins
101307	YutG-like	1	YutG-like	All alpha proteins
101312	Invasion protein A (SipA) , C-terminal actin binding domain	1	Invasion protein A (SipA) , C-terminal actin binding domain	All alpha proteins
101322	YcfC-like	1	YcfC-like	All alpha proteins
101327	YgfB-like	1	YgfB-like	All alpha proteins
101332	Hypothetical protein MTH393	1	Hypothetical protein MTH393	All alpha proteins
101344	Superantigen MAM	1	Superantigen MAM	All alpha proteins
101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	1	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	All alpha proteins
101386	all-alpha NTP pyrophosphatases	11	all-alpha NTP pyrophosphatases	All alpha proteins
101391	Hsp90 co-chaperone CDC37	1	Hsp90 co-chaperone CDC37	All alpha proteins
101399	P40 nucleoprotein	1	P40 nucleoprotein	All alpha proteins
101420	C-terminal domain of Ku80	1	alpha-alpha superhelix	All alpha proteins
101424	Hypothetical protein ST1625	1	alpha-alpha superhelix	All alpha proteins
101447	Formin homology 2 domain (FH2 domain)	2	Formin homology 2 domain (FH2 domain)	All alpha proteins
101473	DhaL-like	3	DhaL-like	All alpha proteins
101478	ADP-ribosylglycohydrolase	2	ADP-ribosylglycohydrolase	All alpha proteins
101489	Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain	1	Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain	All alpha proteins
101494	Stathmin	1	Non-globular all-alpha subunits of globular proteins	All alpha proteins
101498	Anti-sigma factor FlgM	1	Non-globular all-alpha subunits of globular proteins	All alpha proteins
101542	Fungal immunomodulatory protein, FIP	1	Immunoglobulin-like beta-sandwich	All beta proteins
101546	ASF1-like	2	Immunoglobulin-like beta-sandwich	All beta proteins
101576	Supernatant protein factor (SPF), C-terminal domain	1	Supernatant protein factor (SPF), C-terminal domain	All beta proteins
101596	Dextranase, N-terminal domain	1	Dextranase, N-terminal domain	All beta proteins
101601	Smp-1-like	2	Smp-1-like	All beta proteins
101606	Superantigen (mitogen) Ypm	1	Superantigen (mitogen) Ypm	All beta proteins
101690	PAZ domain	4	SH3-like barrel	All beta proteins
101697	Hypothetical protein YfhH	1	SH3-like barrel	All beta proteins
101738	SspB-like	2	SspB-like	All beta proteins
101744	Rof/RNase P subunit-like	3	Rof/RNase P subunit-like	All beta proteins
101751	Hydrophobin II, HfbII	2	Hydrophobin II, HfbII	All beta proteins
101756	Hypothetical protein YgiW	1	OB-fold	All beta proteins
101790	Aminomethyltransferase beta-barrel domain	5	Elongation factor/aminomethyltransferase common domain	All beta proteins
101801	Surface presentation of antigens (SPOA)	2	Surface presentation of antigens (SPOA)	All beta proteins
101816	Replicase NSP9	3	Replicase NSP9	All beta proteins
101821	Aminopeptidase/glucanase lid domain	6	Domain of alpha and beta subunits of F1 ATP synthase-like	All beta proteins
101852	Bacterial fluorinating enzyme, C-terminal domain	2	Bacterial fluorinating enzyme, C-terminal domain	All beta proteins
101874	YceI-like	4	Streptavidin-like	All beta proteins
101887	Apyrase	1	5-bladed beta-propeller	All beta proteins
101898	NHL repeat	3	6-bladed beta-propeller	All beta proteins
101904	GyrA/ParC C-terminal domain-like	3	6-bladed beta-propeller	All beta proteins
101908	Putative isomerase YbhE	1	7-bladed beta-propeller	All beta proteins
101912	Sema domain	3	7-bladed beta-propeller	All beta proteins
101931	Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain	1	WW domain-like	All beta proteins
101936	DNA-binding pseudobarrel domain	3	DNA-binding pseudobarrel domain	All beta proteins
101941	NAC domain	1	NAC domain	All beta proteins
101960	Stabilizer of iron transporter SufD	1	Single-stranded right-handed beta-helix	All beta proteins
101967	Adhesin YadA, collagen-binding domain	1	Single-stranded left-handed beta-helix	All beta proteins
101999	Trimeric adhesin	1	Trimeric adhesin	All beta proteins
102031	AXH domain	2	AXH domain	All beta proteins
102110	(2r)-phospho-3-sulfolactate synthase ComA	1	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
102114	Radical SAM enzymes	3	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
102198	Putative cyclase	3	The 'swivelling' beta/beta/alpha domain	Alpha and beta proteins (a/b)
102215	Creatininase	1	Creatininase	Alpha and beta proteins (a/b)
102220	DNA polymerase III psi subunit	1	DNA polymerase III psi subunit	Alpha and beta proteins (a/b)
102324	F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)	1	F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)	Alpha and beta proteins (a/b)
102400	DNA polymerase III chi subunit	1	DNA polymerase III chi subunit	Alpha and beta proteins (a/b)
102405	MCP/YpsA-like	11	MCP/YpsA-like	Alpha and beta proteins (a/b)
102414	Alpha-2,3/8-sialyltransferase CstII	1	Alpha-2,3/8-sialyltransferase CstII	Alpha and beta proteins (a/b)
102462	Peptidyl-tRNA hydrolase II	2	Peptidyl-tRNA hydrolase II	Alpha and beta proteins (a/b)
102522	Bacterial fluorinating enzyme, N-terminal domain	1	Bacterial fluorinating enzyme, N-terminal domain	Alpha and beta proteins (a/b)
102546	RbsD-like	3	RbsD-like	Alpha and beta proteins (a/b)
102588	LmbE-like	3	LmbE-like	Alpha and beta proteins (a/b)
102645	CoaB-like	3	Ribokinase-like	Alpha and beta proteins (a/b)
102705	NIF3 (NGG1p interacting factor 3)-like	6	NIF3 (NGG1p interacting factor 3)-like	Alpha and beta proteins (a/b)
102712	JAB1/MPN domain	6	Cytidine deaminase-like	Alpha and beta proteins (a/b)
102735	Trigger factor ribosome-binding domain	1	Ribosome binding domain-like	Alpha and beta proteins (a+b)
102741	Obg GTP-binding protein C-terminal domain	1	Obg GTP-binding protein C-terminal domain	Alpha and beta proteins (a+b)
102816	Putative dsDNA mimic	1	Cystatin-like	Alpha and beta proteins (a+b)
102824	Colicin D/E5 nuclease domain	2	Colicin D/E5 nuclease domain	Alpha and beta proteins (a+b)
102829	Cell division protein ZapA-like	2	Cell division protein ZapA-like	Alpha and beta proteins (a+b)
102848	NSFL1 (p97 ATPase) cofactor p47, SEP domain	1	NSFL1 (p97 ATPase) cofactor p47, SEP domain	Alpha and beta proteins (a+b)
102860	mRNA decapping enzyme DcpS N-terminal domain	1	mRNA decapping enzyme DcpS N-terminal domain	Alpha and beta proteins (a+b)
102875	Chromosomal protein MC1	1	Chromosomal protein MC1	Alpha and beta proteins (a+b)
102886	Coproporphyrinogen III oxidase	1	Coproporphyrinogen III oxidase	Alpha and beta proteins (a+b)
102891	Hypothetical protein Ta1206	1	Hypothetical protein Ta1206	Alpha and beta proteins (a+b)
103007	Hypothetical protein TT1725	1	Ferredoxin-like	Alpha and beta proteins (a+b)
103025	Folate-binding domain	5	Folate-binding domain	Alpha and beta proteins (a+b)
103032	Hypothetical protein YwqG	1	Hypothetical protein YwqG	Alpha and beta proteins (a+b)
103039	CheC-like	2	CheC-like	Alpha and beta proteins (a+b)
103054	General secretion pathway protein M, EpsM	1	RRF/tRNA synthetase additional domain-like	Alpha and beta proteins (a+b)
103063	Hypothetical protein YoaG	1	Hypothetical protein YoaG	Alpha and beta proteins (a+b)
103068	Nucleocapsid protein dimerization domain	5	Nucleocapsid protein dimerization domain	Alpha and beta proteins (a+b)
103084	Holliday junction resolvase RusA	1	Bacillus chorismate mutase-like	Alpha and beta proteins (a+b)
103088	OmpA-like	9	Bacillus chorismate mutase-like	Alpha and beta proteins (a+b)
103107	Hypothetical protein c14orf129, hspc210	1	N domain of copper amine oxidase-like	Alpha and beta proteins (a+b)
103111	Activator of Hsp90 ATPase, Aha1	1	Aha1/BPI domain-like	Alpha and beta proteins (a+b)
103145	Tombusvirus P19 core protein, VP19	1	Tombusvirus P19 core protein, VP19	Alpha and beta proteins (a+b)
103165	Ta1353-like	1	Ta1353-like	Alpha and beta proteins (a+b)
103190	Sensory domain-like	11	Profilin-like	Alpha and beta proteins (a+b)
103196	Roadblock/LC7 domain	5	Profilin-like	Alpha and beta proteins (a+b)
103239	MoaD-related protein, C-terminal domain	1	TBP-like	Alpha and beta proteins (a+b)
103243	KA1-like	4	TBP-like	Alpha and beta proteins (a+b)
103247	TT1751-like	2	TBP-like	Alpha and beta proteins (a+b)
103256	Hypothetical protein TM0160	1	Hypothetical protein TM0160	Alpha and beta proteins (a+b)
103263	Chorismate synthase, AroC	3	Chorismate synthase, AroC	Alpha and beta proteins (a+b)
103277	Hypothetical protein HI1480	1	Hypothetical protein HI1480	Alpha and beta proteins (a+b)
103359	Suppressor of Fused, N-terminal domain	1	Suppressor of Fused, N-terminal domain	Alpha and beta proteins (a+b)
103365	Hypothetical protein PH1602	1	Hypothetical protein PH1602	Alpha and beta proteins (a+b)
103370	NinB	1	NinB	Alpha and beta proteins (a+b)
103378	2-methylcitrate dehydratase PrpD	1	2-methylcitrate dehydratase PrpD	Multi-domain proteins (alpha and beta)
103383	Antivirulence factor	1	Antivirulence factor	Multi-domain proteins (alpha and beta)
103388	Virulence-associated V antigen	1	Virulence-associated V antigen	Multi-domain proteins (alpha and beta)
103409	39 kda initiator binding protein, IBP39, C-terminal domains	1	39 kda initiator binding protein, IBP39, C-terminal domains	Multi-domain proteins (alpha and beta)
103417	Major capsid protein VP5	1	Major capsid protein VP5	Multi-domain proteins (alpha and beta)
103431	Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
103436	PetL subunit of the cytochrome b6f complex	2	Single transmembrane helix	Membrane and cell surface proteins and peptides
103441	PetM subunit of the cytochrome b6f complex	2	Single transmembrane helix	Membrane and cell surface proteins and peptides
103446	PetG subunit of the cytochrome b6f complex	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
103451	PetN subunit of the cytochrome b6f complex	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
103456	Preprotein translocase SecE subunit	2	Single transmembrane helix	Membrane and cell surface proteins and peptides
103464	Oligosaccharyltransferase subunit ost4p	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
103473	MFS general substrate transporter	8	MFS general substrate transporter	Membrane and cell surface proteins and peptides
103486	V-type ATP synthase subunit C	2	V-type ATP synthase subunit C	Membrane and cell surface proteins and peptides
103491	Preprotein translocase SecY subunit	3	Preprotein translocase SecY subunit	Membrane and cell surface proteins and peptides
103501	Respiratory nitrate reductase 1 gamma chain	1	Heme-binding four-helical bundle	Membrane and cell surface proteins and peptides
103506	Mitochondrial carrier	2	Mitochondrial carrier	Membrane and cell surface proteins and peptides
103511	Chlorophyll a-b binding protein	4	Chlorophyll a-b binding protein	Membrane and cell surface proteins and peptides
103515	Autotransporter	1	Transmembrane beta-barrels	Membrane and cell surface proteins and peptides
103565	Bubble protein	1	Knottins (small inhibitors, toxins, lectins)	Small proteins
103575	Plexin repeat	3	Trefoil/Plexin domain-like	Small proteins
103580	Necrosis inducing protein 1, NIP1	1	Necrosis inducing protein 1, NIP1	Small proteins
103589	Mini-collagen I, C-terminal domain	1	Mini-collagen I, C-terminal domain	Small proteins
103612	SBT domain	2	SBT domain	Small proteins
103623	Hypothetical protein Ta0289 C-terminal domain	1	Rubredoxin-like	Small proteins
103637	CCHHC domain	1	CCHHC domain	Small proteins
103642	Sec-C motif	3	Sec-C motif	Small proteins
103647	TSP type-3 repeat	1	TSP type-3 repeat	Small proteins
103657	BAR/IMD domain-like	8	BAR/IMD domain-like	All alpha proteins
109604	HD-domain/PDEase-like	34	HD-domain/PDEase-like	All alpha proteins
109631	Transcriptional repressor TraM	1	Long alpha-hairpin	All alpha proteins
109635	DnaK suppressor protein DksA, alpha-hairpin domain	1	Long alpha-hairpin	All alpha proteins
109640	KRAB domain (Kruppel-associated box)	1	KRAB domain (Kruppel-associated box)	All alpha proteins
109709	KorB DNA-binding domain-like	3	DNA/RNA-binding 3-helical bundle	All alpha proteins
109715	DEK C-terminal domain	1	Another 3-helical bundle	All alpha proteins
109728	Hypothetical protein AF0491, middle domain	1	RuvA C-terminal domain-like	All alpha proteins
109732	HBS1-like domain	1	RuvA C-terminal domain-like	All alpha proteins
109736	FGAM synthase PurL, linker domain	1	RuvA C-terminal domain-like	All alpha proteins
109747	Glycogen synthesis protein GlgS	1	Spectrin repeat-like	All alpha proteins
109751	Alpha-hemoglobin stabilizing protein AHSP	1	Spectrin repeat-like	All alpha proteins
109755	PhoU-like	5	Spectrin repeat-like	All alpha proteins
109770	Nickel-containing superoxide dismutase, NiSOD	1	Four-helical up-and-down bundle	All alpha proteins
109775	Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain	1	Four-helical up-and-down bundle	All alpha proteins
109779	Domain from hypothetical 2610208m17rik protein	1	Four-helical up-and-down bundle	All alpha proteins
109797	Bacteriocin immunity protein-like	2	Bromodomain-like	All alpha proteins
109801	Hypothetical protein D-63	1	ROP-like	All alpha proteins
109805	Phenylalanine zipper	1	Dimerisation interlock	All alpha proteins
109839	Cag-Z	1	STAT-like	All alpha proteins
109843	CAPPD, an extracellular domain of amyloid beta A4 protein	1	STAT-like	All alpha proteins
109854	DinB/YfiT-like putative metalloenzymes	7	DinB/YfiT-like putative metalloenzymes	All alpha proteins
109859	NblA-like	1	NblA-like	All alpha proteins
109880	A middle domain of Talin 1	1	A middle domain of Talin 1	All alpha proteins
109885	I/LWEQ domain	3	I/LWEQ domain	All alpha proteins
109905	Surp module (SWAP domain)	4	Surp module (SWAP domain)	All alpha proteins
109910	YgfY-like	2	YgfY-like	All alpha proteins
109915	Hypothetical protein YhaI	1	Hypothetical protein YhaI	All alpha proteins
109920	Hypothetical protein At3g22680	1	Hypothetical protein At3g22680	All alpha proteins
109925	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain	1	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain	All alpha proteins
109993	VPS9 domain	1	VPS9 domain	All alpha proteins
109998	Triger factor/SurA peptide-binding domain-like	2	Triger factor/SurA peptide-binding domain-like	All alpha proteins
110004	Glycolipid transfer protein, GLTP	1	Glycolipid transfer protein, GLTP	All alpha proteins
110009	Hypothetical protein MG354	1	Hypothetical protein MG354	All alpha proteins
110014	Her-1	1	Her-1	All alpha proteins
110019	ERO1-like	1	ERO1-like	All alpha proteins
110035	GDNF receptor-like	1	GDNF receptor-like	All alpha proteins
110069	ApaG-like	3	Immunoglobulin-like beta-sandwich	All beta proteins
110083	Peptidylarginine deiminase Pad4, middle domain	1	Common fold of diphtheria toxin/transcription factors/cytochrome f	All beta proteins
110087	DR1885-like metal-binding protein	1	Common fold of diphtheria toxin/transcription factors/cytochrome f	All beta proteins
110111	Ctag/Cox11	1	Ctag/Cox11	All beta proteins
110132	BTV NS2-like ssRNA-binding domain	1	BTV NS2-like ssRNA-binding domain	All beta proteins
110217	DNA-binding protein LAG-1 (CSL)	1	beta-Trefoil	All beta proteins
110221	AbfB domain	1	beta-Trefoil	All beta proteins
110296	Oligoxyloglucan reducing end-specific cellobiohydrolase	8	7-bladed beta-propeller	All beta proteins
110304	Coronavirus RNA-binding domain	2	Coronavirus RNA-binding domain	All beta proteins
110324	Ribosomal L27 protein-like	6	Barrel-sandwich hybrid	All beta proteins
110391	GlpP-like	1	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
110395	CutC-like	1	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
110399	ThiG-like	2	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
110455	Toprim domain	2	Toprim domain	Alpha and beta proteins (a/b)
110581	Indigoidine synthase A-like	1	Indigoidine synthase A-like	Alpha and beta proteins (a/b)
110710	TTHA0583/YokD-like	4	TTHA0583/YokD-like	Alpha and beta proteins (a/b)
110738	Glycerate kinase I	2	Glycerate kinase I	Alpha and beta proteins (a/b)
110783	Hypothetical protein MTH677	1	Hypothetical protein MTH677	Alpha and beta proteins (a+b)
110814	TmoB-like	1	beta-Grasp (ubiquitin-like)	Alpha and beta proteins (a+b)
110836	Hypothetical protein SAV1430	1	Hypothetical protein SAV1430	Alpha and beta proteins (a+b)
110849	ParB/Sulfiredoxin	4	ParB/Sulfiredoxin	Alpha and beta proteins (a+b)
110857	Gamma-glutamyl cyclotransferase-like	3	Gamma-glutamyl cyclotransferase-like	Alpha and beta proteins (a+b)
110916	Peptidyl-tRNA hydrolase domain-like	1	dsRBD-like	Alpha and beta proteins (a+b)
110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain	1	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain	Alpha and beta proteins (a+b)
110942	HSP90 C-terminal domain	1	HSP90 C-terminal domain	Alpha and beta proteins (a+b)
110993	eIF-2-alpha, C-terminal domain	2	Ferredoxin-like	Alpha and beta proteins (a+b)
110997	Sporulation related repeat	2	Ferredoxin-like	Alpha and beta proteins (a+b)
111006	Dystroglycan, domain 2	1	Dystroglycan, domain 2	Alpha and beta proteins (a+b)
111038	YjbQ-like	4	YjbQ-like	Alpha and beta proteins (a+b)
111057	Hypothetical protein PF0899	1	Hypothetical protein PF0899	Alpha and beta proteins (a+b)
111064	Hut operon positive regulatory protein HutP	1	Hut operon positive regulatory protein HutP	Alpha and beta proteins (a+b)
111069	Hypothetical protein yfbM	1	Hypothetical protein yfbM	Alpha and beta proteins (a+b)
111074	Bacillus phage protein	1	Bacillus phage protein	Alpha and beta proteins (a+b)
111126	Ligand-binding domain in the NO signalling and Golgi transport	4	Ligand-binding domain in the NO signalling and Golgi transport	Alpha and beta proteins (a+b)
111148	YggX-like	1	YggX-like	Alpha and beta proteins (a+b)
111171	Rbstp2229 protein	1	TBP-like	Alpha and beta proteins (a+b)
111249	Sulfolobus fructose-1,6-bisphosphatase-like	1	Sulfolobus fructose-1,6-bisphosphatase-like	Alpha and beta proteins (a+b)
111265	Hemolytic lectin CEL-III, C-terminal domain	1	Hemolytic lectin CEL-III, C-terminal domain	Alpha and beta proteins (a+b)
111278	SSo0622-like	1	SSo0622-like	Alpha and beta proteins (a+b)
111283	Putative modulator of DNA gyrase, PmbA/TldD	3	Putative modulator of DNA gyrase, PmbA/TldD	Alpha and beta proteins (a+b)
111304	Recombination protein RecR	1	Recombination protein RecR	Multi-domain proteins (alpha and beta)
111321	AF1104-like	3	AF1104-like	Multi-domain proteins (alpha and beta)
111326	Urocanase	1	Urocanase	Multi-domain proteins (alpha and beta)
111331	NAD kinase/diacylglycerol kinase-like	6	NAD kinase/diacylglycerol kinase-like	Multi-domain proteins (alpha and beta)
111337	QueA-like	1	QueA-like	Multi-domain proteins (alpha and beta)
111342	CbiD-like	1	CbiD-like	Multi-domain proteins (alpha and beta)
111347	Rap/Ran-GAP	1	Rap/Ran-GAP	Multi-domain proteins (alpha and beta)
111352	Ammonium transporter	2	Ammonium transporter	Membrane and cell surface proteins and peptides
111357	Mitochondrial ATP synthase coupling factor 6	1	Mitochondrial ATP synthase coupling factor 6	Membrane and cell surface proteins and peptides
111364	Tsx-like channel	1	Transmembrane beta-barrels	Membrane and cell surface proteins and peptides
111369	HlyD-like secretion proteins	2	HlyD-like secretion proteins	Membrane and cell surface proteins and peptides
111379	VP4 membrane interaction domain	1	VP4 membrane interaction domain	Membrane and cell surface proteins and peptides
111384	OmpH-like	1	OmpH-like	Membrane and cell surface proteins and peptides
111388	Pollen allergen ole e 6	1	Toxic hairpin	Small proteins
111418	Hormone receptor domain	2	Hormone receptor domain	Small proteins
111423	Resistin	2	Resistin	Small proteins
111430	YAP1 redox domain	1	YAP1 redox domain	Small proteins
116726	TrkA C-terminal domain-like	2	TrkA C-terminal domain-like	Alpha and beta proteins (a+b)
116734	DNA methylase specificity domain	5	DNA methylase specificity domain	Alpha and beta proteins (a+b)
116738	NADH pyrophosphatase intervening domain	1	Rubredoxin-like	Small proteins
116742	eIF2alpha middle domain-like	3	SAM domain-like	All alpha proteins
116768	DNA-binding domain of EIN3-like	1	LEM/SAP HeH motif	All alpha proteins
116820	Rps17e-like	1	DNA/RNA-binding 3-helical bundle	All alpha proteins
116842	XseB-like	1	Spectrin repeat-like	All alpha proteins
116846	MIT domain	3	Spectrin repeat-like	All alpha proteins
116854	Avirulence protein AvrPto	1	immunoglobulin/albumin-binding domain-like	All alpha proteins
116858	Hypothetical membrane protein Ta0354, soluble domain	1	Protozoan pheromone-like	All alpha proteins
116878	TrmE connector domain	1	Four-helical up-and-down bundle	All alpha proteins
116907	Hook domain	1	CH domain-like	All alpha proteins
116915	Hypothetical protein YqbG	1	Hypothetical protein YqbG	All alpha proteins
116922	YugE-like	1	YugE-like	All alpha proteins
116927	EspA/CesA-like	2	EspA/CesA-like	All alpha proteins
116942	RNA-binding protein She2p	1	RNA-binding protein She2p	All alpha proteins
116960	YfbU-like	1	YfbU-like	All alpha proteins
116965	Hypothetical protein MPN330	1	Hypothetical protein MPN330	All alpha proteins
117018	ATP-dependent DNA ligase DNA-binding domain	1	ATP-dependent DNA ligase DNA-binding domain	All alpha proteins
117023	DNA primase DnaG, C-terminal domain	2	DNA primase DnaG, C-terminal domain	All alpha proteins
117066	Accessory protein X4 (ORF8, ORF7a)	1	Immunoglobulin-like beta-sandwich	All beta proteins
117070	LEA14-like	1	Immunoglobulin-like beta-sandwich	All beta proteins
117074	Hypothetical protein PA1324	1	Prealbumin-like	All beta proteins
117100	Beta-galactosidase LacA, domain 3	2	Beta-galactosidase LacA, domain 3	All beta proteins
117125	Glycolsyl hydrolase family 31 C-terminal domain	5	Glycolsyl hydrolase family 31 C-terminal domain-like	All beta proteins
117130	CsrA-like	2	CsrA-like	All beta proteins
117143	Flagellar hook protein flgE	1	Flagellar hook protein flgE	All beta proteins
117281	Kelch motif	4	6-bladed beta-propeller	All beta proteins
117289	Nucleoporin domain	2	7-bladed beta-propeller	All beta proteins
117396	TM1631-like	2	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
117457	FumA C-terminal domain-like	1	The 'swivelling' beta/beta/alpha domain	Alpha and beta proteins (a/b)
117773	GTF2I-like repeat	4	GTF2I-like repeat	Alpha and beta proteins (a+b)
117778	D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain	1	Dodecin subunit-like	Alpha and beta proteins (a+b)
117782	YbjQ-like	1	Dodecin subunit-like	Alpha and beta proteins (a+b)
117839	WWE domain	3	WWE domain	Alpha and beta proteins (a+b)
117856	AF0104/ALDC/Ptd012-like	10	AF0104/ALDC/Ptd012-like	Alpha and beta proteins (a+b)
117892	Band 7/SPFH domain	1	EF-Ts domain-like	Alpha and beta proteins (a+b)
117916	Fe-S cluster assembly (FSCA) domain-like	4	Alpha-lytic protease prodomain-like	Alpha and beta proteins (a+b)
117991	YbeD/HP0495-like	2	Ferredoxin-like	Alpha and beta proteins (a+b)
118001	YehU-like	1	YehU-like	Alpha and beta proteins (a+b)
118010	TM1457-like	3	eIF1-like	Alpha and beta proteins (a+b)
118104	RalF, C-terminal domain	1	TBP-like	Alpha and beta proteins (a+b)
118116	DNA mismatch repair protein MutL	1	DNA mismatch repair protein MutL	Alpha and beta proteins (a+b)
118173	Phosphoprotein M1, C-terminal domain	1	Phosphoprotein M1, C-terminal domain	Alpha and beta proteins (a+b)
118196	YaeB-like	1	YaeB-like	Multi-domain proteins (alpha and beta)
118203	Vacuolar ATP synthase subunit C	1	Vacuolar ATP synthase subunit C	Multi-domain proteins (alpha and beta)
118208	Viral ssDNA binding protein	1	Viral ssDNA binding protein	Multi-domain proteins (alpha and beta)
118215	Proton glutamate symport protein	1	Proton glutamate symport protein	Membrane and cell surface proteins and peptides
118220	Connexin43	1	Connexin43	Membrane and cell surface proteins and peptides
118251	Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain	1	Trefoil/Plexin domain-like	Small proteins
118290	WRKY DNA-binding domain	2	WRKY DNA-binding domain	Small proteins
118310	AN1-like Zinc finger	3	AN1-like Zinc finger	Small proteins
118352	HSP33 redox switch-like	2	HSP33 redox switch-like	Small proteins
118359	Expressed protein At2g23090/F21P24.15	1	Expressed protein At2g23090/F21P24.15	Small proteins
140102	ISY1 domain-like	2	Long alpha-hairpin	All alpha proteins
140106	Calcyclin-binding protein-like	1	Long alpha-hairpin	All alpha proteins
140111	Endosomal sorting complex assembly domain	4	Long alpha-hairpin	All alpha proteins
140121	SPy1572-like	1	Long alpha-hairpin	All alpha proteins
140125	Rabenosyn-5 Rab-binding domain-like	2	Long alpha-hairpin	All alpha proteins
140129	MxiH-like	1	Long alpha-hairpin	All alpha proteins
140319	IscX-like	1	Another 3-helical bundle	All alpha proteins
140356	PPK N-terminal domain-like	2	Spectrin repeat-like	All alpha proteins
140361	MIT domain-like	1	Spectrin repeat-like	All alpha proteins
140367	Coronavirus NSP7-like	1	immunoglobulin/albumin-binding domain-like	All alpha proteins
140371	Vng1086c-like	1	immunoglobulin/albumin-binding domain-like	All alpha proteins
140376	ChaB-like	1	ChaB-like	All alpha proteins
140383	BSD domain-like	2	BSD domain-like	All alpha proteins
140404	EF2458-like	2	Open three-helical up-and-down bundle	All alpha proteins
140415	YppE-like	3	Four-helical up-and-down bundle	All alpha proteins
140423	MW0975(SA0943)-like	1	Four-helical up-and-down bundle	All alpha proteins
140427	VPS28 C-terminal domain-like	2	Four-helical up-and-down bundle	All alpha proteins
140453	EsxAB dimer-like	4	Ferritin-like	All alpha proteins
140459	PE/PPE dimer-like	2	Ferritin-like	All alpha proteins
140478	LemA-like	1	Bromodomain-like	All alpha proteins
140482	MAST3 pre-PK domain-like	1	Bromodomain-like	All alpha proteins
140486	PA2201 N-terminal domain-like	1	Bromodomain-like	All alpha proteins
140490	Nqo1C-terminal domain-like	2	Bromodomain-like	All alpha proteins
140496	HP1531-like	1	ROP-like	All alpha proteins
140500	BAS1536-like	1	ROP-like	All alpha proteins
140506	FHV B2 protein-like	1	ROP-like	All alpha proteins
140560	TM0693-like	1	Methionine synthase domain-like	All alpha proteins
140566	FlgN-like	1	STAT-like	All alpha proteins
140570	MukF C-terminal domain-like	1	STAT-like	All alpha proteins
140576	HIV integrase-binding domain	1	N-cbl like	All alpha proteins
140581	TraM-like	1	TraM-like	All alpha proteins
140586	Dcp2 domain-like	1	Dcp2 domain-like	All alpha proteins
140591	Type III secretion system domain	3	Type III secretion system domain	All alpha proteins
140607	EF2947-like	1	EF2947-like	All alpha proteins
140612	EB1 dimerisation domain-like	1	EB1 dimerisation domain-like	All alpha proteins
140652	YozE-like	2	SAM domain-like	All alpha proteins
140657	Hyaluronidase post-catalytic domain-like	2	Hyaluronidase domain-like	All alpha proteins
140663	TTHA0068-like	2	Hyaluronidase domain-like	All alpha proteins
140670	YoaC-like	1	YoaC-like	All alpha proteins
140683	SP0561-like	1	SP0561-like	All alpha proteins
140688	YfmB-like	1	YfmB-like	All alpha proteins
140693	IpaD-like	2	IpaD-like	All alpha proteins
140713	Phage replication organizer domain	1	Phage replication organizer domain	All alpha proteins
140718	Mediator hinge subcomplex-like	2	Mediator hinge subcomplex-like	All alpha proteins
140726	AF0941-like	1	AF0941-like	All alpha proteins
140731	PA2201 C-terminal domain-like	1	PA2201 C-terminal domain-like	All alpha proteins
140736	Rv1873-like	1	Rv1873-like	All alpha proteins
140741	RUN domain-like	1	RUN domain-like	All alpha proteins
140746	SipA N-terminal domain-like	1	SipA N-terminal domain-like	All alpha proteins
140753	PG0816-like	1	PG0816-like	All alpha proteins
140804	YidB-like	1	YidB-like	All alpha proteins
140809	Rhabdovirus nucleoprotein-like	2	Rhabdovirus nucleoprotein-like	All alpha proteins
140856	USP8 N-terminal domain-like	1	alpha-alpha superhelix	All alpha proteins
140860	Pseudo ankyrin repeat-like	1	alpha-alpha superhelix	All alpha proteins
140864	TROVE domain-like	1	alpha-alpha superhelix	All alpha proteins
140869	GUN4-like	1	GUN4-like	All alpha proteins
140914	PriB N-terminal domain-like	1	PriB N-terminal domain-like	All alpha proteins
140919	DNA terminal protein	1	DNA terminal protein	All alpha proteins
140924	Duffy binding domain-like	3	Duffy binding domain-like	All alpha proteins
140931	Fic-like	1	Fic-like	All alpha proteins
140959	Indolic compounds 2,3-dioxygenase-like	3	Indolic compounds 2,3-dioxygenase-like	All alpha proteins
140979	Topoisomerase V catalytic domain-like	1	Topoisomerase V catalytic domain-like	All alpha proteins
140984	PTPA-like	3	PTPA-like	All alpha proteins
140990	FtsH protease domain-like	1	FtsH protease domain-like	All alpha proteins
140996	Hermes dimerisation domain	1	Hermes dimerisation domain	All alpha proteins
141000	Glu-tRNAGln amidotransferase C subunit	1	Non-globular all-alpha subunits of globular proteins	All alpha proteins
141004	RelB-like	1	Non-globular all-alpha subunits of globular proteins	All alpha proteins
141066	ICP-like	4	Immunoglobulin-like beta-sandwich	All beta proteins
141072	CalX-like	4	Immunoglobulin-like beta-sandwich	All beta proteins
141086	Agglutinin HPA-like	1	HPA-like	All beta proteins
141091	L21p-like	1	L21p-like	All beta proteins
141099	Atu1913-like	1	Atu1913-like	All beta proteins
141130	Acetamidase/Formamidase-like	1	CUB-like	All beta proteins
141251	Kinase-associated protein B-like	1	SH3-like barrel	All beta proteins
141255	YccV-like	1	SH3-like barrel	All beta proteins
141259	CarD-like	1	SH3-like barrel	All beta proteins
141300	GatD N-terminal domain-like	1	Sm-like fold	All beta proteins
141318	TM0957-like	1	OB-fold	All beta proteins
141322	NfeD domain-like	1	OB-fold	All beta proteins
141371	PilZ domain-like	3	Split barrel-like	All beta proteins
141447	PA2021-like	1	PH domain-like barrel	All beta proteins
141452	Hcp1-like	3	Hcp1-like	All beta proteins
141457	BH3618-like	1	BH3618-like	All beta proteins
141480	Extracellular hemoglobin linker subunit, receptor domain	3	Streptavidin-like	All beta proteins
141488	YdhA-like	1	Streptavidin-like	All beta proteins
141493	Allene oxide cyclase-like	1	AOC barrel-like	All beta proteins
141523	L,D-transpeptidase catalytic domain-like	3	L,D-transpeptidase catalytic domain-like	All beta proteins
141530	PTSIIA/GutA-like	1	PTSIIA/GutA-like	All beta proteins
141562	At5g01610-like	1	At5g01610-like	All beta proteins
141571	Pentapeptide repeat-like	4	Single-stranded right-handed beta-helix	All beta proteins
141658	Bacteriophage trimeric proteins domain	2	Pseudo beta-prism I	All beta proteins
141666	\'SARS ORF9b-like	1	SARS ORF9b-like	All beta proteins
141673	MOSC N-terminal domain-like	1	MOSC N-terminal domain-like	All beta proteins
141678	MAL13P1.257-like	2	MAL13P1.257-like	All beta proteins
141694	AF2212/PG0164-like	2	Double-split beta-barrel	All beta proteins
141729	FimD N-terminal domain-like	2	FimD N-terminal domain-like	All beta proteins
141734	HisI-like	1	HisI-like	All beta proteins
141739	MFPT repeat-like	3	MFPT repeat-like	All beta proteins
141868	EAL domain-like	1	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
141986	LD-carboxypeptidase A C-terminal domain-like	1	The 'swivelling' beta/beta/alpha domain	Alpha and beta proteins (a/b)
142019	Nqo1 FMN-binding domain-like	1	Nqo1 FMN-binding domain-like	Alpha and beta proteins (a/b)
142338	CofD-like	2	CofD-like	Alpha and beta proteins (a/b)
142433	CinA-like	1	Anticodon-binding domain-like	Alpha and beta proteins (a/b)
142535	AF0625-like	2	Phosphorylase/hydrolase-like	Alpha and beta proteins (a/b)
142695	RibA-like	1	RibA-like	Alpha and beta proteins (a/b)
142754	NadA-like	1	NadA-like	Alpha and beta proteins (a/b)
142764	YgbK-like	2	YgbK-like	Alpha and beta proteins (a/b)
142795	CAC2185-like	1	CAC2185-like	Alpha and beta proteins (a/b)
142823	ComB-like	1	ComB-like	Alpha and beta proteins (a/b)
142877	EndoU-like	2	EndoU-like	Alpha and beta proteins (a+b)
142887	PhtA domain-like	1	IL8-like	Alpha and beta proteins (a+b)
142897	TFB5-like	3	TFB5-like	Alpha and beta proteins (a+b)
142906	YjbR-like	2	Secretion chaperone-like	Alpha and beta proteins (a+b)
142913	YktB/PF0168-like	2	YktB/PF0168-like	Alpha and beta proteins (a+b)
142921	WGR domain-like	1	WGR domain-like	Alpha and beta proteins (a+b)
142984	Nqo1 middle domain-like	1	beta-Grasp (ubiquitin-like)	Alpha and beta proteins (a+b)
143011	RelE-like	5	RelE-like	Alpha and beta proteins (a+b)
143021	Ns1 effector domain-like	1	Ns1 effector domain-like	Alpha and beta proteins (a+b)
143026	Kinetochore globular domain	2	Kinetochore globular domain-like	Alpha and beta proteins (a+b)
143034	L35p-like	2	L35p-like	Alpha and beta proteins (a+b)
143076	Coronavirus NSP8-like	1	Coronavirus NSP8-like	Alpha and beta proteins (a+b)
143081	BB1717-like	5	BB1717-like	Alpha and beta proteins (a+b)
143100	TTHA1013/TTHA0281-like	2	TTHA1013/TTHA0281-like	Alpha and beta proteins (a+b)
143113	NAP-like	5	NAP-like	Alpha and beta proteins (a+b)
143120	YefM-like	3	YefM-like	Alpha and beta proteins (a+b)
143212	Rv2632c-like	1	dsRBD-like	Alpha and beta proteins (a+b)
143243	Nqo5-like	1	Nqo5-like	Alpha and beta proteins (a+b)
143410	DOPA-like	1	Ferredoxin-like	Alpha and beta proteins (a+b)
143422	Transposase IS200-like	3	Ferredoxin-like	Alpha and beta proteins (a+b)
143430	CRISPR associated protein Cas2-like	5	Ferredoxin-like	Alpha and beta proteins (a+b)
143437	THUMP domain-like	4	THUMP domain	Alpha and beta proteins (a+b)
143447	AMMECR1-like	1	AMMECR1-like	Alpha and beta proteins (a+b)
143456	VC0467-like	3	VC0467-like	Alpha and beta proteins (a+b)
143469	ImmE5-like	1	ImmE5-like	Alpha and beta proteins (a+b)
143477	TM1622-like	1	TM1622-like	Alpha and beta proteins (a+b)
143492	Prenyltransferase-like	2	Antiparallel beta/alpha barrel (PT-barrel)	Alpha and beta proteins (a+b)
143503	PUG domain-like	1	PUG domain-like	Alpha and beta proteins (a+b)
143517	TRCF domain-like	1	TRCF domain-like	Alpha and beta proteins (a+b)
143548	Serine metabolism enzymes domain	2	FwdE/GAPDH domain-like	Alpha and beta proteins (a+b)
143555	FwdE-like	2	FwdE/GAPDH domain-like	Alpha and beta proteins (a+b)
143560	MK0786-like	2	MK0786-like	Alpha and beta proteins (a+b)
143567	YkuJ-like	1	YkuJ-like	Alpha and beta proteins (a+b)
143575	GAS2 domain-like	1	N domain of copper amine oxidase-like	Alpha and beta proteins (a+b)
143579	GK1464-like	1	N domain of copper amine oxidase-like	Alpha and beta proteins (a+b)
143587	SARS receptor-binding domain-like	2	SARS receptor-binding domain-like	Alpha and beta proteins (a+b)
143592	TTHA1528-like	1	TTHA1528-like	Alpha and beta proteins (a+b)
143597	YojJ-like	1	YojJ-like	Alpha and beta proteins (a+b)
143602	STIV B116-like	2	STIV B116-like	Alpha and beta proteins (a+b)
143631	ApbE-like	2	T-fold	Alpha and beta proteins (a+b)
143724	PHP14-like	3	PHP14-like	Alpha and beta proteins (a+b)
143737	YeeU-like	1	Profilin-like	Alpha and beta proteins (a+b)
143744	GlcG-like	1	Profilin-like	Alpha and beta proteins (a+b)
143749	Phage tail protein-like	2	Phage tail protein-like	Alpha and beta proteins (a+b)
143791	DUSP-like	1	DUSP-like	Alpha and beta proteins (a+b)
143842	YwmB-like	1	TBP-like	Alpha and beta proteins (a+b)
143847	XisI-like	3	XisI-like	Alpha and beta proteins (a+b)
143856	DeoB insert domain-like	1	DeoB insert domain-like	Alpha and beta proteins (a+b)
143865	CorA soluble domain-like	1	CorA soluble domain-like	Alpha and beta proteins (a+b)
143870	PF0523-like	1	PF0523-like	Alpha and beta proteins (a+b)
143875	ERH-like	1	ERH-like	Alpha and beta proteins (a+b)
143880	NE0471 N-terminal domain-like	1	NE0471 N-terminal domain-like	Alpha and beta proteins (a+b)
143885	RGC domain-like	1	RGC domain-like	Alpha and beta proteins (a+b)
143968	UbiD C-terminal domain-like	1	UbiD C-terminal domain-like	Alpha and beta proteins (a+b)
143975	IlvD/EDD N-terminal domain-like	1	IlvD/EDD N-terminal domain-like	Alpha and beta proteins (a+b)
143985	L,D-transpeptidase pre-catalytic domain-like	1	L,D-transpeptidase pre-catalytic domain-like	Alpha and beta proteins (a+b)
143990	YbiA-like	1	YbiA-like	Alpha and beta proteins (a+b)
143995	AF2331-like	1	AF2331-like	Alpha and beta proteins (a+b)
144000	Oxysterol-binding protein-like	1	Oxysterol-binding protein-like	Alpha and beta proteins (a+b)
144005	ORC1-binding domain	1	ORC1-binding domain	Alpha and beta proteins (a+b)
144010	CofE-like	1	CofE-like	Alpha and beta proteins (a+b)
144015	Peptidoglycan deacetylase N-terminal noncatalytic region	1	Peptidoglycan deacetylase N-terminal noncatalytic region	Alpha and beta proteins (a+b)
144020	FdhE-like	1	FdhE-like	Multi-domain proteins (alpha and beta)
144052	Thermophilic metalloprotease-like	2	Thermophilic metalloprotease-like	Multi-domain proteins (alpha and beta)
144059	ImpE-like	1	ImpE-like	Multi-domain proteins (alpha and beta)
144064	Heme iron utilization protein-like	2	Heme iron utilization protein-like	Multi-domain proteins (alpha and beta)
144074	E2F-DP heterodimerization region	3	E2F-DP heterodimerization region	Multi-domain proteins (alpha and beta)
144083	Magnesium transport protein CorA, transmembrane region	1	Transmembrane helix hairpin	Membrane and cell surface proteins and peptides
144091	Rhomboid-like	2	Rhomboid-like	Membrane and cell surface proteins and peptides
144122	Tim10-like	4	Tim10-like	Small proteins
144129	Vanabin-like	1	Cysteine zipper	Small proteins
144206	NOB1 zinc finger-like	1	Rubredoxin-like	Small proteins
144210	Nop10-like SnoRNP	2	Rubredoxin-like	Small proteins
144217	CSL zinc finger	2	Rubredoxin-like	Small proteins
144232	HIT/MYND zinc finger-like	3	HIT/MYND zinc finger-like	Small proteins
144246	Coronavirus NSP10-like	1	Coronavirus NSP10-like	Small proteins
144251	Viral leader polypeptide zinc finger	1	Viral leader polypeptide zinc finger	Small proteins
144256	TSP9-like	1	Intrinsically disordered proteins	Small proteins
158212	Htr2 transmembrane domain-like	1	Transmembrane helix hairpin	Membrane and cell surface proteins and peptides
158221	YnzC-like	1	Long alpha-hairpin	All alpha proteins
158230	PRP4-like	1	LEM/SAP HeH motif	All alpha proteins
158235	SOCS box-like	2	SOCS box-like	All alpha proteins
158366	Efb C-domain-like	1	Spectrin repeat-like	All alpha proteins
158372	AF1782-like	2	immunoglobulin/albumin-binding domain-like	All alpha proteins
158379	YqgQ-like	1	YqgQ-like	All alpha proteins
158388	YvfG-like	1	Open three-helical up-and-down bundle	All alpha proteins
158397	TM1646-like	2	Four-helical up-and-down bundle	All alpha proteins
158414	HP0062-like	1	Ferritin-like	All alpha proteins
158418	SO2669-like	1	Ferritin-like	All alpha proteins
158430	Bacillus cereus metalloprotein-like	4	Bromodomain-like	All alpha proteins
158436	Ta0600-like	2	Bromodomain-like	All alpha proteins
158442	DsbB-like	1	Bromodomain-like	All alpha proteins
158446	IVS-encoded protein-like	2	Bromodomain-like	All alpha proteins
158452	YqcC-like	1	Bromodomain-like	All alpha proteins
158457	Orange domain-like	1	Orange domain-like	All alpha proteins
158472	HAMP domain-like	1	HAMP domain-like	All alpha proteins
158494	PG0775 C-terminal domain-like	1	N-cbl like	All alpha proteins
158499	DnaD domain-like	1	DnaD domain-like	All alpha proteins
158504	BH2638-like	1	BH2638-like	All alpha proteins
158544	GspK insert domain-like	2	SAM domain-like	All alpha proteins
158548	FLJ32549 domain-like	1	Hyaluronidase domain-like	All alpha proteins
158553	TAFH domain-like	2	TAFH domain-like	All alpha proteins
158560	BH3980-like	2	Left-handed superhelix	All alpha proteins
158568	AF1862-like	2	ATPD N-terminal domain-like	All alpha proteins
158573	GINS helical bundle-like	4	GINS helical bundle-like	All alpha proteins
158587	Jann4075-like	1	Jann4075-like	All alpha proteins
158615	RbcX-like	3	RbcX-like	All alpha proteins
158622	YheA/YmcA-like	3	YheA-like	All alpha proteins
158634	RPA2825-like	1	RPA2825-like	All alpha proteins
158639	ENT-like	1	ENT-like	All alpha proteins
158651	YejL-like	2	YejL-like	All alpha proteins
158668	MtlR-like	2	MtlR-like	All alpha proteins
158675	Sama2622-like	1	Sama2622-like	All alpha proteins
158682	TerB-like	2	TerB-like	All alpha proteins
158694	UraD-Like	3	UraD-like	All alpha proteins
158702	Sec63 N-terminal domain-like	3	Sec63 N-terminal domain-like	All alpha proteins
158710	PSPTO4464-like	1	PSPTO4464-like	All alpha proteins
158715	MG296-like	1	MG296-like	All alpha proteins
158745	LanC-like	1	alpha/alpha toroid	All alpha proteins
158752	HP0242-like	1	HP0242-like	All alpha proteins
158757	SMc04008-like	1	SMc04008-like	All alpha proteins
158791	MgtE N-terminal domain-like	2	alpha-alpha superhelix	All alpha proteins
158832	Tex N-terminal region-like	1	Tex N-terminal region-like	All alpha proteins
158837	AGR_C_984p-like	1	AGR_C_984p-like	All alpha proteins
158842	PMT central region-like	1	PMT central region-like	All alpha proteins
158851	Lag-3 N-terminal region	1	Non-globular all-alpha subunits of globular proteins	All alpha proteins
158855	Lipase chaperone-like	1	Non-globular all-alpha subunits of globular proteins	All alpha proteins
158911	NEAT domain-like	7	Immunoglobulin-like beta-sandwich	All beta proteins
158949	Smr-associated domain-like	1	C2 domain-like	All beta proteins
158974	WSSV envelope protein-like	2	WSSV envelope protein-like	All beta proteins
158997	Trm112p-like	1	Trm112p-like	All beta proteins
159006	YopX-like	3	YopX-like	All beta proteins
159034	Mib/herc2 domain-like	1	SH3-like barrel	All beta proteins
159038	YorP-like	1	SH3-like barrel	All beta proteins
159042	Plus3-like	1	SH3-like barrel	All beta proteins
159065	Dom34/Pelota N-terminal domain-like	2	Sm-like fold	All beta proteins
159071	TrmB C-terminal domain-like	1	Sm-like fold	All beta proteins
159121	BC4932-like	1	OB-fold	All beta proteins
159127	HupF/HypC-like	3	OB-fold	All beta proteins
159133	EutN/CcmL-like	4	OB-fold	All beta proteins
159141	HIN-2000 domain-like	4	OB-fold	All beta proteins
159173	YkvR-like	1	Split barrel-like	All beta proteins
159203	NifT/FixU-like	1	NifT/FixU barrel-like	All beta proteins
159222	YopT-like	1	YopT-like	All beta proteins
159234	FomD-like	1	FomD barrel-like	All beta proteins
159238	SO1590-like	2	AOC barrel-like	All beta proteins
159245	AttH-like	1	AttH-like	All beta proteins
159270	YmcC-like	1	YmcC-like	All beta proteins
159275	PA1994-like	1	Spiral beta-roll	All beta proteins
159283	Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain	1	Single-stranded left-handed beta-helix	All beta proteins
159468	AtpF-like	4	AtpF-like	Alpha and beta proteins (a/b)
159501	EreA/ChaN-like	4	EreA/ChaN-like	Alpha and beta proteins (a/b)
159594	XCC0632-like	2	Anticodon-binding domain-like	Alpha and beta proteins (a/b)
159612	TBP-interacting protein-like	1	Restriction endonuclease-like	Alpha and beta proteins (a/b)
159659	Cgl1923-like	1	Phosphorylase/hydrolase-like	Alpha and beta proteins (a/b)
159664	CobE/GbiG C-terminal domain-like	3	CobE/GbiG C-terminal domain-like	Alpha and beta proteins (a/b)
159672	CbiG N-terminal domain-like	1	CbiG N-terminal domain-like	Alpha and beta proteins (a/b)
159709	PhnH-like	1	PLP-dependent transferase-like	Alpha and beta proteins (a/b)
159713	Dhaf3308-like	1	PLP-dependent transferase-like	Alpha and beta proteins (a/b)
159774	YerB-like	1	YerB-like	Alpha and beta proteins (a/b)
159779	CdCA1 repeat-like	1	CdCA1 repeat-like	Alpha and beta proteins (a/b)
159800	PrpR receptor domain-like	1	Chelatase-like	Alpha and beta proteins (a/b)
159865	XkdW-like	1	gpW/XkdW-like	Alpha and beta proteins (a+b)
159871	YdgH-like	2	Dodecin subunit-like	Alpha and beta proteins (a+b)
159888	YdhG-like	2	Secretion chaperone-like	Alpha and beta proteins (a+b)
159894	YgaC/TfoX-N like	2	Secretion chaperone-like	Alpha and beta proteins (a+b)
159902	PH1570-like	1	PH1570-like	Alpha and beta proteins (a+b)
159936	NSP3A-like	1	beta-Grasp (ubiquitin-like)	Alpha and beta proteins (a+b)
159941	MM3350-like	1	MM3350-like	Alpha and beta proteins (a+b)
160059	PriA/YqbF domain	5	GINS/PriA/YqbF domain	Alpha and beta proteins (a+b)
160088	NRDP1 C-terminal domain-like	1	NRDP1 C-terminal domain-like	Alpha and beta proteins (a+b)
160099	SARS Nsp1-like	1	SARS Nsp1-like	Alpha and beta proteins (a+b)
160104	Acetoacetate decarboxylase-like	2	Acetoacetate decarboxylase-like	Alpha and beta proteins (a+b)
160113	YegP-like	4	YegP-like	Alpha and beta proteins (a+b)
160148	CPE0013-like	1	CPE0013-like	Alpha and beta proteins (a+b)
160191	YcgL-like	1	YcgL-like	Alpha and beta proteins (a+b)
160207	NMB0488-like	1	NMB0488-like	Alpha and beta proteins (a+b)
160214	FlaG-like	1	FlaG-like	Alpha and beta proteins (a+b)
160219	AMPKBI-like	2	AMPKBI-like	Alpha and beta proteins (a+b)
160240	Cation efflux protein cytoplasmic domain-like	2	Alpha-lytic protease prodomain-like	Alpha and beta proteins (a+b)
160246	EspE N-terminal domain-like	2	Alpha-lytic protease prodomain-like	Alpha and beta proteins (a+b)
160272	Shew3726-like	1	Shew3726-like	Alpha and beta proteins (a+b)
160350	Rnp2-like	1	Ferredoxin-like	Alpha and beta proteins (a+b)
160355	Bacterial polysaccharide co-polymerase-like	3	Ferredoxin-like	Alpha and beta proteins (a+b)
160363	MTH889-like	1	Ferredoxin-like	Alpha and beta proteins (a+b)
160369	Ribosomal protein L10-like	1	Ferredoxin-like	Alpha and beta proteins (a+b)
160374	RplX-like	1	RplX-like	Alpha and beta proteins (a+b)
160379	SP0830-like	1	SP0830-like	Alpha and beta proteins (a+b)
160387	NosL/MerB-like	2	NosL/MerB-like	Alpha and beta proteins (a+b)
160419	YdfO-like	1	YdfO-like	Alpha and beta proteins (a+b)
160424	BH3703-like	1	BH3703-like	Alpha and beta proteins (a+b)
160443	SMR domain-like	1	IF3-like	Alpha and beta proteins (a+b)
160448	PG1857-like	1	PG1857-like	Alpha and beta proteins (a+b)
160453	PB2 C-terminal domain-like	2	PB2 C-terminal domain-like	Alpha and beta proteins (a+b)
160459	BLRF2-like	1	BLRF2-like	Alpha and beta proteins (a+b)
160467	PH0987 N-terminal domain-like	1	DCoH-like	Alpha and beta proteins (a+b)
160472	NMB0513-like	1	NMB0513-like	Alpha and beta proteins (a+b)
160477	PA1123-like	1	PA1123-like	Alpha and beta proteins (a+b)
160481	BRK domain-like	2	GYF/BRK domain-like	Alpha and beta proteins (a+b)
160515	YueI-like	1	Bacillus chorismate mutase-like	Alpha and beta proteins (a+b)
160519	BB2672-like	2	Bacillus chorismate mutase-like	Alpha and beta proteins (a+b)
160527	V-type ATPase subunit E-like	3	FwdE/GAPDH domain-like	Alpha and beta proteins (a+b)
160532	Ava3019-like	1	Ava3019-like	Alpha and beta proteins (a+b)
160537	SpoVG-like	1	SpoVG-like	Alpha and beta proteins (a+b)
160570	YonK-like	1	YonK-like	Alpha and beta proteins (a+b)
160574	BT0923-like	2	BLIP-like	Alpha and beta proteins (a+b)
160582	MbtH-like	3	MbtH/L9 domain-like	Alpha and beta proteins (a+b)
160631	SMI1/KNR4-like	3	SMI1/KNR4-like	Alpha and beta proteins (a+b)
160651	FLJ32549 C-terminal domain-like	1	Gelsolin-like	Alpha and beta proteins (a+b)
160683	YNR034W-A-like	1	Profilin-like	Alpha and beta proteins (a+b)
160696	BTG domain-like	1	BTG domain-like	Alpha and beta proteins (a+b)
160704	YehR-like	1	YehR-like	Alpha and beta proteins (a+b)
160713	YqaI-like	1	YqaI-like	Alpha and beta proteins (a+b)
160719	gpW/gp25-like	1	gpW/gp25-like	Alpha and beta proteins (a+b)
160755	YugN-like	1	TBP-like	Alpha and beta proteins (a+b)
160761	TTHC002-like	1	TTHC002-like	Alpha and beta proteins (a+b)
160766	NE1680-like	1	NE1680-like	Alpha and beta proteins (a+b)
160800	Lp2179-like	1	Lp2179-like	Alpha and beta proteins (a+b)
160887	Rv2827c C-terminal domain-like	1	Rv2827c C-terminal domain-like	Alpha and beta proteins (a+b)
160892	Phosphoprotein oligomerization domain-like	1	Phosphoprotein oligomerization domain-like	Alpha and beta proteins (a+b)
160897	Taf5 N-terminal domain-like	3	Taf5 N-terminal domain-like	Alpha and beta proteins (a+b)
160904	Jann2411-like	1	Jann2411-like	Alpha and beta proteins (a+b)
160909	ATP12-like	2	ATP12-like	Alpha and beta proteins (a+b)
160920	PSTPO5379-like	1	PSTPO5379-like	Alpha and beta proteins (a+b)
160925	PG1388-like	1	PG1388-like	Alpha and beta proteins (a+b)
160930	FlhC-like	1	FlhC-like	Multi-domain proteins (alpha and beta)
160935	VPA0735-like	1	VPA0735-like	Multi-domain proteins (alpha and beta)
160940	Api92-like	1	Api92-like	Multi-domain proteins (alpha and beta)
160945	PH0156-like	1	PH0156-like	Multi-domain proteins (alpha and beta)
160950	YacF-like	1	YacF-like	Multi-domain proteins (alpha and beta)
160957	Poly(A) polymerase catalytic subunit-like	1	Poly(A) polymerase catalytic subunit-like	Multi-domain proteins (alpha and beta)
160964	MalF N-terminal region-like	1	MalF N-terminal region-like	Multi-domain proteins (alpha and beta)
160975	AF1531-like	1	AF1531-like	Multi-domain proteins (alpha and beta)
160980	SSO1389-like	1	SSO1389-like	Multi-domain proteins (alpha and beta)
160991	CV3147-like	1	CV3147-like	Multi-domain proteins (alpha and beta)
160996	HI0933 insert domain-like	2	HI0933 insert domain-like	Multi-domain proteins (alpha and beta)
161003	flu NP-like	1	Flu NP-like	Multi-domain proteins (alpha and beta)
161008	Viral glycoprotein ectodomain-like	3	Viral glycoprotein ectodomain-like	Multi-domain proteins (alpha and beta)
161017	Photosystem II reaction center protein L, PsbL	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
161021	Photosystem II reaction center protein J, PsbJ	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
161025	Photosystem II 10 kDa phosphoprotein PsbH	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
161029	Photosystem II reaction center protein T, PsbT	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
161033	Photosystem II reaction center protein M, PsbM	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
161037	Photosystem II reaction center protein K, PsbK	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
161041	Photosystem II reaction center protein I, PsbI	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
161045	Cytochrome b559 subunits	2	Single transmembrane helix	Membrane and cell surface proteins and peptides
161055	PsbZ-like	1	Transmembrane helix hairpin	Membrane and cell surface proteins and peptides
161060	ATP synthase B chain-like	1	ATP synthase B chain-like	Membrane and cell surface proteins and peptides
161065	ATP synthase D chain-like	1	ATP synthase D chain-like	Membrane and cell surface proteins and peptides
161070	SNF-like	5	SNF-like	Membrane and cell surface proteins and peptides
161077	Photosystem II antenna protein-like	2	Photosystem II antenna protein-like	Membrane and cell surface proteins and peptides
161084	MAPEG domain-like	4	MAPEG domain-like	Membrane and cell surface proteins and peptides
161093	MgtE membrane domain-like	1	MgtE membrane domain-like	Membrane and cell surface proteins and peptides
161098	MetI-like	4	MetI-like	Membrane and cell surface proteins and peptides
161111	Cation efflux protein transmembrane domain-like	1	Cation efflux protein transmembrane domain-like	Membrane and cell surface proteins and peptides
161148	VhTI-like	1	Toxic hairpin	Small proteins
161187	YfgJ-like	1	Rubredoxin-like	Small proteins
161219	CHY zinc finger-like	1	CHY zinc finger-like	Small proteins
161229	E6 C-terminal domain-like	1	E6 C-terminal domain-like	Small proteins
161234	E7 C-terminal domain-like	2	E7 C-terminal domain-like	Small proteins
161240	T-antigen specific domain-like	1	T-antigen specific domain-like	Small proteins
161245	Zinc hairpin stack	1	Zinc hairpin stack	Small proteins
254122	Anthrax protective antigen C-terminal-like	1	Anthrax protective antigen C-terminal-like	Membrane and cell surface proteins and peptides
254128	Complement C3 linker domain-like	2	Complement C3 linker domain-like	Small proteins
254131	Complement system CUB domain	2	CUB-like	All beta proteins
254132	PA C-terminal domain-like	2	PA C-terminal domain-like	Multi-domain proteins (alpha and beta)
254133	Zn aminopeptidase insert domain	4	Immunoglobulin-like beta-sandwich	All beta proteins
254134	importin-beta binding (IBB) domain of snurportin-1	1	Intrinsically disordered proteins	Small proteins
254135	DDB1 C-terminal-like	1	DDB1 C-terminal-like	All alpha proteins
254136	SV5-V core-like	1	SV5-V core-like	Alpha and beta proteins (a+b)
254137	LytB-like	1	LytB-like	Alpha and beta proteins (a/b)
254138	DNA gyrase B, C-terminal domain-like	1	DNA gyrase B, C-terminal domain-like	Multi-domain proteins (alpha and beta)
254139	DNA gyrase B, insert domain-like	1	DNA gyrase B, insert domain-like	Alpha and beta proteins (a+b)
254140	Ferredoxin-dependent bilin reductase	1	Coproporphyrinogen III oxidase	Alpha and beta proteins (a+b)
254141	Tyrosinase cofactor MelC1	1	Tyrosinase cofactor MelC1-like	Alpha and beta proteins (a+b)
254142	RIG-I C-terminal-like	3	Mss4-like	All beta proteins
254143	Fibronectin III-like	1	Immunoglobulin-like beta-sandwich	All beta proteins
254144	STING, TM173 CTD-like	2	STING C-terminal-like	Alpha and beta proteins (a+b)
254145	LAMP conserved domain-like	2	Pseudo beta-prism II	All beta proteins
267595	Sec-beta or SecG subunit of protein translocation channel	2	Transmembrane helix hairpin	Membrane and cell surface proteins and peptides
267597	Filoviridae VP35-like	2	Filoviridae VP35-like	Alpha and beta proteins (a+b)
267599	Photosystem II reaction center protein X, PsbX	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
267600	Photosystem II reaction center protein ycf12	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
267601	bi-CXXC zinc finger-like	1	bi-CXXC zinc finger-like	Small proteins
267604	Ligand-gated ion channels	1	Gated ion channels	Membrane and cell surface proteins and peptides
310574	Sodium/potassium-transporting ATPase, beta subunit transmembrane helix	1	Single transmembrane helix	Membrane and cell surface proteins and peptides
310575	Sodium/potassium-transporting ATPase, beta subunit extracellular domain	1	Immunoglobulin-like beta-sandwich	All beta proteins
310576	ATP1G1/PLM/MAT8-like (FXYD-like)	4	Single transmembrane helix	Membrane and cell surface proteins and peptides
310577	V1 ATP synthase A subunit, bulge domain-like	1	Barrel-sandwich hybrid	All beta proteins
310581	PIWI domain N-terminal-like	6	Phosphotyrosine protein phosphatases I-like	Alpha and beta proteins (a/b)
310582	Menin N-terminal domain-like	1	Menin N-terminal domain-like	Alpha and beta proteins (a+b)
310584	Outer membrane carboxylate (Occ) channels	6	Transmembrane beta-barrels	Membrane and cell surface proteins and peptides
310586	Multidrug and toxic compound extrusion (MATE) transporters	2	Multidrug and toxic compound extrusion (MATE) transporter-like	Membrane and cell surface proteins and peptides
310587	Tenuivirus/Phlebovirus nucleocapsid protein	1	Tenuivirus/Phlebovirus nucleocapsid protein-like	All alpha proteins
310588	Flavivirus non-structural protein NS2B-like	2	Flavivirus non-structural protein NS2B-like	Small proteins
310590	KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like	2	KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like	Alpha and beta proteins (a+b)
310592	Handle domain of Transferrin binding protein TbpB-like	2	Handle domain of Transferrin binding protein TbpB-like	All beta proteins
310593	Iron-sulfur cluster-binding zinc finger CDGSH type	1	Iron-sulfur cluster-binding zinc finger CDGSH type	Small proteins
310594	Arenavirus nucleocapsid protein N-terminal domain-like	1	Arenavirus nucleocapsid protein-like	All alpha proteins
310595	Retinal pigment epithelial membrane protein-like	2	7-bladed beta-propeller	All beta proteins
310596	CW-type zinc finger	2	FYVE/PHD zinc finger	Small proteins
310597	Glycosyl hydrolase family 98 C-terminal domain-like	2	Hyaluronate lyase-like, C-terminal domain	All beta proteins
310598	POlypeptide TRansport Associated (PORTRA) domain-like	9	POlypeptide TRansport Associated (PORTRA) domain-like	Alpha and beta proteins (a+b)
310599	CRISPR associated protein Cas1-like	4	CRISPR associated protein Cas1-like	Multi-domain proteins (alpha and beta)
310600	Diacylglycerol kinase (DgkA)-like	1	Diacylglycerol kinase (DgkA)-like	Membrane and cell surface proteins and peptides
310601	DIL domain-like	3	alpha-alpha superhelix	All alpha proteins
310602	GBBH N-terminal domain-like (DUF971)	2	GBBH N-terminal domain-like	Alpha and beta proteins (a+b)
310603	Sus1-like	2	Sus1-like	All alpha proteins
310605	Membrane antigen precursor-like	2	Immunoglobulin-like beta-sandwich	All beta proteins
345915	Proteasome regulatory subunit Rpn2 N-terminal domain-like	2	alpha-alpha superhelix	All alpha proteins
345916	U5 small nuclear riboprotein particle assembly factor Aar2 C-terminal domain-like	1	alpha-alpha superhelix	All alpha proteins
345917	Pre-mRNA splicing factor Prp38 N-terminal-like	2	alpha-alpha superhelix	All alpha proteins
345918	Proteasome regulatory subunit Rpn2 C-terminal domain-like	2	Prealbumin-like	All beta proteins
345919	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	1	OB-fold	All beta proteins
345920	Upf1 barrel domain-like	3	Domain of alpha and beta subunits of F1 ATP synthase-like	All beta proteins
345921	Pleckstrin-like receptor for ubiquitin (Pru) domain	1	PH domain-like barrel	All beta proteins
345922	U5 small nuclear riboprotein particle assembly factor Aar2 N-terminal domain-like	1	U5 small nuclear riboprotein particle assembly factor Aar2 N-terminal domain-like	All beta proteins
345923	CRISPR-associated endonuclease Cas9/Csn1, Target recognition (REC) lobe	3	CRISPR-associated endonuclease Cas9/Csn1, Target recognition (REC) lobe	Alpha and beta proteins (a+b)
345924	N-terminal domain of Prp8 / Spp42	1	N-terminal domain of Prp8 / Spp42	Alpha and beta proteins (a+b)
345925	Pre-mRNA splicing factor Cwc16-like	1	Pre-mRNA splicing factor Cwc16-like	Alpha and beta proteins (a+b)
345926	CRISPR-associated endonuclease Cas9/Csn1, PAM-interacting (PI) domain	3	CRISPR-associated endonuclease Cas9/Csn1, Protospace-adjacent motif (PAM)-interacting domain	Multi-domain proteins (alpha and beta)
345927	CRISPR associated protein CasA/Cse1-like	1	CRISPR associated protein CasA/Cse1-like	Multi-domain proteins (alpha and beta)
345929	RNA polymerase I subunit A14-like	1	RNA polymerase I subunit A14-like	Small proteins
345930	Pre-mRNA splicing factor Cwf14-like	1	Pre-mRNA splicing factor Cwf14-like	Small proteins
345931	Pre-mRNA splicing factor Cwf5-like	1	Pre-mRNA splicing factor Cwf5-like	Small proteins
345932	Pre-mRNA splicing factor Phf5-like	1	Triquetra knot	Small proteins
418735	Perfringolysin N-terminal-like	5	Perfringolysin N-terminal-like	Membrane and cell surface proteins and peptides
418736	Perfringolysin C-terminal-like	1	Perfringolysin C-terminal-like	All beta proteins
418737	Jumonji C-terminal domain-like	1	Jumonji C-terminal domain-like	Small proteins
418740	Influenza virus PB2 \'627\' domain-like	2	Influenza virus PB2 '627' domain-like	Alpha and beta proteins (a+b)
418741	Influenza virus PB2 cap binding domain-like	3	Influenza virus PB2 cap binding domain-like	Alpha and beta proteins (a+b)
418745	Phosphoinositide 3-kinase alpha adaptor-binding domain (ABD)-like	1	beta-Grasp (ubiquitin-like)	Alpha and beta proteins (a+b)
418746	Coronavirus S1 beta-rich region	1	Coronavirus S1 beta-rich region	Multi-domain proteins (alpha and beta)
418747	Filovirus surface glycoprotein-like	1	Filovirus surface glycoprotein-like	Membrane and cell surface proteins and peptides
418748	Vacuolar ATP synthase subunit a (also called I subunit) C-terminal domain	1	Vacuolar ATP synthase subunit a (also called I subunit) C-terminal domain	Membrane and cell surface proteins and peptides
418749	Helical insert domain of RAG1	2	Helical insert domain of RAG1	Membrane and cell surface proteins and peptides
418750	Bestropin channel-like	2	Bestropin channel-like	Membrane and cell surface proteins and peptides
418752	Cytosolic domain of OSCA channel-like	1	Ferredoxin-like	Alpha and beta proteins (a+b)
418753	Cytosolic domain of anoctamin channel-like	1	Ferredoxin-like	Alpha and beta proteins (a+b)
418754	Glycosyl hydrolase family 99	1	TIM beta/alpha-barrel	Alpha and beta proteins (a/b)
418755	DUF4478 domain-like	1	Ferredoxin-like	Alpha and beta proteins (a+b)
418756	DUF3412 domain	1	Anoctamin (TMEM16)-like	Membrane and cell surface proteins and peptides
418757	SAM domain from DprA-like	1	SAM domain-like	All alpha proteins
418758	NUC domain from CRISPR-associated protein Cas12a / Cpf1-like	1	NUC domain from CRISPR-associated protein Cas12a / Cpf1-like	Alpha and beta proteins (a+b)
418759	Oligonucleotide-binding domain from CRISPR-associated protein Cas12a / Cpf1-like	1	Small protein B (SmpB)	All beta proteins
418760	Putative dsDNA-binding domain from CRISPR-associated protein Cas12a / Cpf1-like	1	Putative dsDNA-binding domain from CRISPR-associated protein Cas12a / Cpf1-like	All alpha proteins
418761	N-terminal helical domains from CRISPR-associated protein Cas12a / Cpf1-like	1	N-terminal helical domains from CRISPR-associated protein Cas12a / Cpf1-like	Multi-domain proteins (alpha and beta)
418762	Ebola nucleoprotein C-terminal domain-like	1	Ebola nucleoprotein C-terminal domain-like	Alpha and beta proteins (a+b)
418763	MACPF C-terminal prism-like	1	beta-Prism I	All beta proteins
418764	Oligosaccharide binding protein	1	Dodecin subunit-like	Alpha and beta proteins (a+b)
418765	P2X receptor head domain-like	1	Dodecin subunit-like	Alpha and beta proteins (a+b)
418766	P2X receptor body domain-like	1	P2X receptor body domain-like	All beta proteins
418767	P2X receptor transmembrane region	1	Dodecin subunit-like	Alpha and beta proteins (a+b)
418768	Olfactomedin (OLF)-like	2	5-bladed beta-propeller	All beta proteins
418769	Lem10 N-terminal domain-like	1	Lem10 N-terminal domain-like	Alpha and beta proteins (a+b)
418770	Cas3 C-terminal domain-like	1	Cas3 C-terminal domain-like	Alpha and beta proteins (a+b)
418771	Helical bundle domains from Csm1/Cmr1-like	4	Four-helical up-and-down bundle	All alpha proteins
418772	B domain from Cmr1-like	2	B domain from Cmr1-like	Alpha and beta proteins (a+b)
418773	Extracellular adhesion domain of SabA-like	2	Extracellular adhesion domain of SabA-like	Membrane and cell surface proteins and peptides
418774	Lewis(b) antigen binding domain of BabA-like	1	Lewis(b) antigen binding domain of BabA-like	Alpha and beta proteins (a+b)
418775	LYR protein-like	3	LYR proteins from mammalian respiratory complex I	Membrane and cell surface proteins and peptides
418776	Antiporter-like subunits from respiratory complex I	8	Antiporter-like subunits from respiratory complex I	Membrane and cell surface proteins and peptides
418777	Respiratory complex I subunit NuoK-like	2	Non-antiporter membrane subunits from respiratory complex I	Membrane and cell surface proteins and peptides
418778	Respiratory complex I subunit NuoJ-like	2	Non-antiporter membrane subunits from respiratory complex I	Membrane and cell surface proteins and peptides
418779	Respiratory complex I subunit NuoA-like	2	Non-antiporter membrane subunits from respiratory complex I	Membrane and cell surface proteins and peptides
418780	Protein-only RNAse P central domain-like	1	Protein-only RNAse P central domain-like	Small proteins