PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2fmaa1  ( 133 )    çkflhqermdvçethlhWhtvAketÇsek------stnLhdygmllpçgi
d2m05a1  ( 135 )    çqfshvnsrdqçndyqhWkdeAgkqÇktkkskgnkdMivrsfavlepçal
                     bbbbbb       aaaaaaaaaaaaaa         bbbbbbb      

                             60  
d2fmaa1  ( 177 )    dkfrGVeFvÇçpl
d2m05a1  ( 185 )    dmftGveFvçÇpn
                        bbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2fmaa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2fmaa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Amyloid beta a4 protein copper binding domain (domain 2)	Human (Homo sapiens) [TaxId: 9606]		view
d2m05a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2m05a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Nematode (Caenorhabditis elegans) [TaxId: 6239]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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C	K	F	L	H	Q	E	R	M	D	V	C	E	T	H	L	H	W	H	T	V	A	K	E	T	C	S	E	K	-	-	-	-	-	-	S	T	N	L	H	D	Y	G	M	L	L	P	C	G	I	D	K	F	R	G	V	E	F	V	C	C	P	L
C	Q	F	S	H	V	N	S	R	D	Q	C	N	D	Y	Q	H	W	K	D	E	A	G	K	Q	C	K	T	K	K	S	K	G	N	K	D	M	I	V	R	S	F	A	V	L	E	P	C	A	L	D	M	F	T	G	V	E	F	V	C	C	P	N

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60
C	K	F	L	H	Q	E	R	M	D	V	C	E	T	H	L	H	W	H	T	V	A	K	E	T	C	S	E	K	-	-	-	-	-	-	S	T	N	L	H	D	Y	G	M	L	L	P	C	G	I	D	K	F	R	G	V	E	F	V	C	C	P	L
C	Q	F	S	H	V	N	S	R	D	Q	C	N	D	Y	Q	H	W	K	D	E	A	G	K	Q	C	K	T	K	K	S	K	G	N	K	D	M	I	V	R	S	F	A	V	L	E	P	C	A	L	D	M	F	T	G	V	E	F	V	C	C	P	N

									10										20										30										40										50										60
C	K	F	L	H	Q	E	R	M	D	V	C	E	T	H	L	H	W	H	T	V	A	K	E	T	C	S	E	K	-	-	-	-	-	-	S	T	N	L	H	D	Y	G	M	L	L	P	C	G	I	D	K	F	R	G	V	E	F	V	C	C	P	L
C	Q	F	S	H	V	N	S	R	D	Q	C	N	D	Y	Q	H	W	K	D	E	A	G	K	Q	C	K	T	K	K	S	K	G	N	K	D	M	I	V	R	S	F	A	V	L	E	P	C	A	L	D	M	F	T	G	V	E	F	V	C	C	P	N

									10										20										30										40										50										60
C	K	F	L	H	Q	E	R	M	D	V	C	E	T	H	L	H	W	H	T	V	A	K	E	T	C	S	E	K	-	-	-	-	-	-	S	T	N	L	H	D	Y	G	M	L	L	P	C	G	I	D	K	F	R	G	V	E	F	V	C	C	P	L
C	Q	F	S	H	V	N	S	R	D	Q	C	N	D	Y	Q	H	W	K	D	E	A	G	K	Q	C	K	T	K	K	S	K	G	N	K	D	M	I	V	R	S	F	A	V	L	E	P	C	A	L	D	M	F	T	G	V	E	F	V	C	C	P	N