PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1hf8a1  ( 150 )                rgadgvmrtmntekLlktVpiiqnqMdalLdfnvnsne
d1j2ha-  ( 192 )    aanklikemvqedqkrmekis-krvnAieeVnnnvklLtemVmshsq---
d1j2jb-  ( 168 )                                                      
d1wrda1  ( 215 )                 eqigklrs-eLemVsgnvrvMsemLtelvpt------
                                           aaaaaaaaaaaaaaaaa          

                             60        70        80        90        100 
d1hf8a1  ( 188 )    LtngvinaaFmllFkdAirlfaaYneGIiNLlekYfdMk-----knqcke
d1j2ha-  ( 238 )    -----ggaaagssedlMkeLyqrCermrptLfrlasdTe---dndealae
d1j2jb-  ( 168 )                     ifedeekskmlarLlkss---------------
d1wrda1  ( 245 )    -------qAepadlelLqelnrtCramqqrVlelipqianeqlteeLliv
                              aaaaaaaaaaaaaaaaaaaaaaaa          aaaaaa

                             110       120       130       140       
d1hf8a1  ( 233 )    GldiYkkFltrmtrIseflkvAeqvgidrgdipdlsqapssllDaleqh
d1j2ha-  ( 280 )    IlqAndnLtqVinlykqlvrgeev                         
d1j2jb-  ( 186 )    hpedlraAnklikemvqedqkrm                          
d1wrda1  ( 288 )    ndnLnnVFlrHerFerfrt----g                         
                    aaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1hf8a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1hf8a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Clathrin assembly lymphoid myeloid leukaemia protein, Calm	Phosphoinositide-binding clathrin adaptor, domain 2	Norway rat (Rattus norvegicus) [TaxId: 10116]	view
d1j2ha- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1j2ha- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	ADP-ribosylation factor binding protein Gga1	GAT domain	Human (Homo sapiens) [TaxId: 9606]	view
d1j2jb- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1j2jb- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	ADP-ribosylation factor binding protein Gga1	GAT domain	Human (Homo sapiens) [TaxId: 9606]	view
d1wrda1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wrda1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Target of Myb protein 1, TOM1	GAT domain	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1hf8a1	A	O55012	GO:0005543
d1hf8a1	A	O55012	GO:0005545
d1hf8a1	A	O55012	GO:0030136
d1hf8a1	A	O55012	GO:0030276
d1hf8a1	A	O55012	GO:0048268
d1hf8a1	A	O55012	GO:0072583
d1hf8a1	A	O55012	GO:0005543
d1hf8a1	A	O55012	GO:0005545
d1hf8a1	A	O55012	GO:0030136
d1hf8a1	A	O55012	GO:0030276
d1hf8a1	A	O55012	GO:0048268
d1hf8a1	A	O55012	GO:0072583
d1j2jb_	B	P84078	GO:0005802
d1j2jb_	B	P84078	GO:0006886
d1j2jb_	B	P84078	GO:0031267
d1j2jb_	B	P84078	GO:0035091
d1j2jb_	B	P84078	GO:0043130
d1j2jb_	B	Q9UJY5	GO:0005802
d1j2jb_	B	Q9UJY5	GO:0006886
d1j2jb_	B	Q9UJY5	GO:0031267
d1j2jb_	B	Q9UJY5	GO:0035091
d1j2jb_	B	Q9UJY5	GO:0043130
d1wrda1	A	O60784	GO:0035091
d1wrda1	A	O60784	GO:0043130
d1wrda1	A	P0CH28	GO:0035091
d1wrda1	A	P0CH28	GO:0043130

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