PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1nkta2  ( 616 )    akmvtraiksaqtqveqqnfevrknvlkydeVmnqQrkvIyaerrrIleg
d1tf5a2  ( 571 )    skmvsravessqkrvegnnfdsrkqllqyddvlrqqrevIykqrfevids
d3dina2  ( 619 )       lsklieniqkkveginfsirktlmeMddvldkQrravyslrdqIlle
                        aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa  

                             60        70        80        90        100 
d1nkta2  ( 666 )    enLkdqAldmVrdvItayvdgatg-egyaedwdldaLwtaLktlY--pVg
d1tf5a2  ( 621 )    enLReiVenmIksSLeraIaayTpreelpeewkldgLvdlINttY-Ldeg
d3dina2  ( 666 )    kdydeylKdifEdvvstrveefCsgk-------nwdieslknslsffpag
                       aaaaaaaaaaaaaaa                  aaaaaa        

                             110       120       130       140       150 
d1nkta2  ( 713 )    itadsl--------tlleaLlkDAerAYaaReaeLeeiagegaMrqlErn
d1tf5a2  ( 670 )    aleksdIfgk-epdemlelIMdrIitkynekeeq----fGkeqMrefEkv
d3dina2  ( 709 )    lfdldekqfssseelhdylfnrlweeyqrkkqeig------edyrkvirf
                                    aaaaaaaaaaaaaaa             aaaaaa

                             160       170       180       190       200 
d1nkta2  ( 770 )    vllnVIdrkwreHlyeMdylkegIglramaqrdplveYqreGydmfmaMl
d1tf5a2  ( 715 )    IVlrAvdskwmdHidaMdqLrqgihlrAyaqtnplreYqmeGfamfehMi
d3dina2  ( 753 )    lmlriIddHwrryleeVehvkeavqlrsygqkdpiveFkkeTyymfdeMm
                    aaaaaaaaaaaaaaaaaaaaaa             aaaaaaaaaaaaaaa

                             210    
d1nkta2  ( 820 )    dgmkeeSVgfLFnvtv
d1tf5a2  ( 765 )    esiedeVAkfVMkaei
d3dina2  ( 803 )    rrindtIAnyvl--rv
                    aaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1nkta2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nkta2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Helical scaffold and wing domains of SecA	Helical scaffold and wing domains of SecA	Mycobacterium tuberculosis [TaxId: 1773]	view
d1tf5a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1tf5a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Helical scaffold and wing domains of SecA	Helical scaffold and wing domains of SecA	Bacillus subtilis [TaxId: 1423]	view
d3dina2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3dina2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Helical scaffold and wing domains of SecA	Helical scaffold and wing domains of SecA	Thermotoga maritima MSB8 [TaxId: 243274]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1nkta2	A	P9WGP5	GO:0005515
d1nkta2	A	P9WGP5	GO:0005524
d1nkta2	A	P9WGP5	GO:0005576
d1nkta2	A	P9WGP5	GO:0005737
d1nkta2	A	P9WGP5	GO:0005829
d1nkta2	A	P9WGP5	GO:0005886
d1nkta2	A	P9WGP5	GO:0006605
d1nkta2	A	P9WGP5	GO:0006886
d1nkta2	A	P9WGP5	GO:0008564
d1nkta2	A	P9WGP5	GO:0009274
d1nkta2	A	P9WGP5	GO:0015031
d1nkta2	A	P9WGP5	GO:0016020
d1nkta2	A	P9WGP5	GO:0016887
d1nkta2	A	P9WGP5	GO:0017038
d1nkta2	A	P9WGP5	GO:0031522
d1nkta2	A	P9WGP5	GO:0043952
d1nkta2	A	P9WGP5	GO:0065002
d1tf5a2	A	P28366	GO:0005524
d1tf5a2	A	P28366	GO:0005737
d1tf5a2	A	P28366	GO:0005886
d1tf5a2	A	P28366	GO:0006605
d1tf5a2	A	P28366	GO:0006886
d1tf5a2	A	P28366	GO:0008564
d1tf5a2	A	P28366	GO:0015031
d1tf5a2	A	P28366	GO:0016020
d1tf5a2	A	P28366	GO:0017038
d1tf5a2	A	P28366	GO:0031522
d1tf5a2	A	P28366	GO:0043952
d1tf5a2	A	P28366	GO:0045121
d1tf5a2	A	P28366	GO:0046872
d1tf5a2	A	P28366	GO:0065002

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S	K	M	V	S	R	A	V	E	S	S	Q	K	R	V	E	G	N	N	F	D	S	R	K	Q	L	L	Q	Y	D	D	V	L	R	Q	Q	R	E	V	I	Y	K	Q	R	F	E	V	I	D	S	E	N	L	R	E	I	V	E	N	M	I	K	S	S	L	E	R	A	I	A	A	Y	T	P	R	E	E	L	P	E	E	W	K	L	D	G	L	V	D	L	I	N	T	T	Y	-	L	D	E	G	A	L	E	K	S	D	I	F	G	K	-	E	P	D	E	M	L	E	L	I	M	D	R	I	I	T	K	Y	N	E	K	E	E	Q	-	-	-	-	F	G	K	E	Q	M	R	E	F	E	K	V	I	V	L	R	A	V	D	S	K	W	M	D	H	I	D	A	M	D	Q	L	R	Q	G	I	H	L	R	A	Y	A	Q	T	N	P	L	R	E	Y	Q	M	E	G	F	A	M	F	E	H	M	I	E	S	I	E	D	E	V	A	K	F	V	M	K	A	E	I
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S	K	M	V	S	R	A	V	E	S	S	Q	K	R	V	E	G	N	N	F	D	S	R	K	Q	L	L	Q	Y	D	D	V	L	R	Q	Q	R	E	V	I	Y	K	Q	R	F	E	V	I	D	S	E	N	L	R	E	I	V	E	N	M	I	K	S	S	L	E	R	A	I	A	A	Y	T	P	R	E	E	L	P	E	E	W	K	L	D	G	L	V	D	L	I	N	T	T	Y	-	L	D	E	G	A	L	E	K	S	D	I	F	G	K	-	E	P	D	E	M	L	E	L	I	M	D	R	I	I	T	K	Y	N	E	K	E	E	Q	-	-	-	-	F	G	K	E	Q	M	R	E	F	E	K	V	I	V	L	R	A	V	D	S	K	W	M	D	H	I	D	A	M	D	Q	L	R	Q	G	I	H	L	R	A	Y	A	Q	T	N	P	L	R	E	Y	Q	M	E	G	F	A	M	F	E	H	M	I	E	S	I	E	D	E	V	A	K	F	V	M	K	A	E	I
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