PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1l3pa-  ( 150 )       ipagEliIdkIdaAFkvAataAatapaddkftvFeaaFnkaIketTg
d6trka-  (   2 )    gkatteeqkliedvnasFraAmattanvppadkyktFeaaFtvsYkrnla
                              aaaaaaaaaaaaa      333aaaaaaaaaaaaaaaa  

                             60        70        80        90        100 
d1l3pa-  ( 198 )    gay-dtYkcIpsLeaaVkA-yaatvaaapqvkyavFeaaLtkaItamsev
d6trka-  (  52 )    dAvskApqlvpkldevynaAynaAdhaapedkyeaFvlhFsealriiagt
                          333 aaaaaaa           333aaaaaaaaaaaaaaaaa  

                            
d1l3pa-  ( 247 )    qkvs    
d6trka-  ( 102 )    pevhavkp

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1l3pa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1l3pa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Functional domain of pollen allergen Phl P 5b	Group V grass pollen allergen	Timothy grass (Phleum pratense) [TaxId: 15957]		view
d6trka- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6trka- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pollen allergen Phl P 6	Group V grass pollen allergen	Timothy grass (Phleum pratense) [TaxId: 15957]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	I	P	A	G	E	L	I	I	D	K	I	D	A	A	F	K	V	A	A	T	A	A	A	T	A	P	A	D	D	K	F	T	V	F	E	A	A	F	N	K	A	I	K	E	T	T	G	G	A	Y	-	D	T	Y	K	C	I	P	S	L	E	A	A	V	K	A	-	Y	A	A	T	V	A	A	A	P	Q	V	K	Y	A	V	F	E	A	A	L	T	K	A	I	T	A	M	S	E	V	Q	K	V	S	-	-	-	-
G	K	A	T	T	E	E	Q	K	L	I	E	D	V	N	A	S	F	R	A	A	M	A	T	T	A	N	V	P	P	A	D	K	Y	K	T	F	E	A	A	F	T	V	S	Y	K	R	N	L	A	D	A	V	S	K	A	P	Q	L	V	P	K	L	D	E	V	Y	N	A	A	Y	N	A	A	D	H	A	A	P	E	D	K	Y	E	A	F	V	L	H	F	S	E	A	L	R	I	I	A	G	T	P	E	V	H	A	V	K	P

Member	Chain	UniProtKB	GO term

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-	-	-	I	P	A	G	E	L	I	I	D	K	I	D	A	A	F	K	V	A	A	T	A	A	A	T	A	P	A	D	D	K	F	T	V	F	E	A	A	F	N	K	A	I	K	E	T	T	G	G	A	Y	-	D	T	Y	K	C	I	P	S	L	E	A	A	V	K	A	-	Y	A	A	T	V	A	A	A	P	Q	V	K	Y	A	V	F	E	A	A	L	T	K	A	I	T	A	M	S	E	V	Q	K	V	S	-	-	-	-
G	K	A	T	T	E	E	Q	K	L	I	E	D	V	N	A	S	F	R	A	A	M	A	T	T	A	N	V	P	P	A	D	K	Y	K	T	F	E	A	A	F	T	V	S	Y	K	R	N	L	A	D	A	V	S	K	A	P	Q	L	V	P	K	L	D	E	V	Y	N	A	A	Y	N	A	A	D	H	A	A	P	E	D	K	Y	E	A	F	V	L	H	F	S	E	A	L	R	I	I	A	G	T	P	E	V	H	A	V	K	P

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-	-	-	I	P	A	G	E	L	I	I	D	K	I	D	A	A	F	K	V	A	A	T	A	A	A	T	A	P	A	D	D	K	F	T	V	F	E	A	A	F	N	K	A	I	K	E	T	T	G	G	A	Y	-	D	T	Y	K	C	I	P	S	L	E	A	A	V	K	A	-	Y	A	A	T	V	A	A	A	P	Q	V	K	Y	A	V	F	E	A	A	L	T	K	A	I	T	A	M	S	E	V	Q	K	V	S	-	-	-	-
G	K	A	T	T	E	E	Q	K	L	I	E	D	V	N	A	S	F	R	A	A	M	A	T	T	A	N	V	P	P	A	D	K	Y	K	T	F	E	A	A	F	T	V	S	Y	K	R	N	L	A	D	A	V	S	K	A	P	Q	L	V	P	K	L	D	E	V	Y	N	A	A	Y	N	A	A	D	H	A	A	P	E	D	K	Y	E	A	F	V	L	H	F	S	E	A	L	R	I	I	A	G	T	P	E	V	H	A	V	K	P

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-	-	-	I	P	A	G	E	L	I	I	D	K	I	D	A	A	F	K	V	A	A	T	A	A	A	T	A	P	A	D	D	K	F	T	V	F	E	A	A	F	N	K	A	I	K	E	T	T	G	G	A	Y	-	D	T	Y	K	C	I	P	S	L	E	A	A	V	K	A	-	Y	A	A	T	V	A	A	A	P	Q	V	K	Y	A	V	F	E	A	A	L	T	K	A	I	T	A	M	S	E	V	Q	K	V	S	-	-	-	-
G	K	A	T	T	E	E	Q	K	L	I	E	D	V	N	A	S	F	R	A	A	M	A	T	T	A	N	V	P	P	A	D	K	Y	K	T	F	E	A	A	F	T	V	S	Y	K	R	N	L	A	D	A	V	S	K	A	P	Q	L	V	P	K	L	D	E	V	Y	N	A	A	Y	N	A	A	D	H	A	A	P	E	D	K	Y	E	A	F	V	L	H	F	S	E	A	L	R	I	I	A	G	T	P	E	V	H	A	V	K	P