PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d7dkzl-  (   6 )      vvqpingdpfigsletpvtssplvawylsnlpgyrtavnpllRGievG
d7lx0l-  (  10 )    ndiikpfkgdpclgnlStpindsplakafinnlpayrkgltpfmrGleiG
                        bb333      bb      aaaaaaa           aaaaaaaaa

                             60        70        80        90        100 
d7dkzl-  (  54 )    lahGfllVgpfVkagplrnt-eiaGqagslaAgglVvilsicltiygiss
d7lx0l-  (  60 )    mahGyflVgpeVvigplresahgAnlsGlitAiyiavsaClgisifaitt
                    aaaaaaa aaaa           aaaaaaaaaaaaaaaaaaaaaaaaaaa

                             110       120       130       140       150 
d7dkzl-  ( 103 )    fnegdpStApsltltgrkkqpdqlqtadgwakfTgGFffGGisGviwAff
d7lx0l-  ( 110 )    Fq-gnpk--gsyssys-kdslrplrtreewsqlngGiflGAmggAifAyl
                                                aaaaaaaaaaaaaaaaaaaaaa

                             160     
d7dkzl-  ( 153 )    llyv             
d7lx0l-  ( 156 )    llenfdaldailrgavn
                    aaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d7dkzl- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d7dkzl- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Pea (Pisum sativum) [TaxId: 3888]		view
d7lx0l- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d7lx0l- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Fischerella thermalis [TaxId: 98439]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
-	-	V	V	Q	P	I	N	G	D	P	F	I	G	S	L	E	T	P	V	T	S	S	P	L	V	A	W	Y	L	S	N	L	P	G	Y	R	T	A	V	N	P	L	L	R	G	I	E	V	G	L	A	H	G	F	L	L	V	G	P	F	V	K	A	G	P	L	R	N	T	-	E	I	A	G	Q	A	G	S	L	A	A	G	G	L	V	V	I	L	S	I	C	L	T	I	Y	G	I	S	S	F	N	E	G	D	P	S	T	A	P	S	L	T	L	T	G	R	K	K	Q	P	D	Q	L	Q	T	A	D	G	W	A	K	F	T	G	G	F	F	F	G	G	I	S	G	V	I	W	A	F	F	L	L	Y	V	-	-	-	-	-	-	-	-	-	-	-	-	-
N	D	I	I	K	P	F	K	G	D	P	C	L	G	N	L	S	T	P	I	N	D	S	P	L	A	K	A	F	I	N	N	L	P	A	Y	R	K	G	L	T	P	F	M	R	G	L	E	I	G	M	A	H	G	Y	F	L	V	G	P	E	V	V	I	G	P	L	R	E	S	A	H	G	A	N	L	S	G	L	I	T	A	I	Y	I	A	V	S	A	C	L	G	I	S	I	F	A	I	T	T	F	Q	-	G	N	P	K	-	-	G	S	Y	S	S	Y	S	-	K	D	S	L	R	P	L	R	T	R	E	E	W	S	Q	L	N	G	G	I	F	L	G	A	M	G	G	A	I	F	A	Y	L	L	L	E	N	F	D	A	L	D	A	I	L	R	G	A	V	N

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
-	-	V	V	Q	P	I	N	G	D	P	F	I	G	S	L	E	T	P	V	T	S	S	P	L	V	A	W	Y	L	S	N	L	P	G	Y	R	T	A	V	N	P	L	L	R	G	I	E	V	G	L	A	H	G	F	L	L	V	G	P	F	V	K	A	G	P	L	R	N	T	-	E	I	A	G	Q	A	G	S	L	A	A	G	G	L	V	V	I	L	S	I	C	L	T	I	Y	G	I	S	S	F	N	E	G	D	P	S	T	A	P	S	L	T	L	T	G	R	K	K	Q	P	D	Q	L	Q	T	A	D	G	W	A	K	F	T	G	G	F	F	F	G	G	I	S	G	V	I	W	A	F	F	L	L	Y	V	-	-	-	-	-	-	-	-	-	-	-	-	-
N	D	I	I	K	P	F	K	G	D	P	C	L	G	N	L	S	T	P	I	N	D	S	P	L	A	K	A	F	I	N	N	L	P	A	Y	R	K	G	L	T	P	F	M	R	G	L	E	I	G	M	A	H	G	Y	F	L	V	G	P	E	V	V	I	G	P	L	R	E	S	A	H	G	A	N	L	S	G	L	I	T	A	I	Y	I	A	V	S	A	C	L	G	I	S	I	F	A	I	T	T	F	Q	-	G	N	P	K	-	-	G	S	Y	S	S	Y	S	-	K	D	S	L	R	P	L	R	T	R	E	E	W	S	Q	L	N	G	G	I	F	L	G	A	M	G	G	A	I	F	A	Y	L	L	L	E	N	F	D	A	L	D	A	I	L	R	G	A	V	N

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
-	-	V	V	Q	P	I	N	G	D	P	F	I	G	S	L	E	T	P	V	T	S	S	P	L	V	A	W	Y	L	S	N	L	P	G	Y	R	T	A	V	N	P	L	L	R	G	I	E	V	G	L	A	H	G	F	L	L	V	G	P	F	V	K	A	G	P	L	R	N	T	-	E	I	A	G	Q	A	G	S	L	A	A	G	G	L	V	V	I	L	S	I	C	L	T	I	Y	G	I	S	S	F	N	E	G	D	P	S	T	A	P	S	L	T	L	T	G	R	K	K	Q	P	D	Q	L	Q	T	A	D	G	W	A	K	F	T	G	G	F	F	F	G	G	I	S	G	V	I	W	A	F	F	L	L	Y	V	-	-	-	-	-	-	-	-	-	-	-	-	-
N	D	I	I	K	P	F	K	G	D	P	C	L	G	N	L	S	T	P	I	N	D	S	P	L	A	K	A	F	I	N	N	L	P	A	Y	R	K	G	L	T	P	F	M	R	G	L	E	I	G	M	A	H	G	Y	F	L	V	G	P	E	V	V	I	G	P	L	R	E	S	A	H	G	A	N	L	S	G	L	I	T	A	I	Y	I	A	V	S	A	C	L	G	I	S	I	F	A	I	T	T	F	Q	-	G	N	P	K	-	-	G	S	Y	S	S	Y	S	-	K	D	S	L	R	P	L	R	T	R	E	E	W	S	Q	L	N	G	G	I	F	L	G	A	M	G	G	A	I	F	A	Y	L	L	L	E	N	F	D	A	L	D	A	I	L	R	G	A	V	N

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
-	-	V	V	Q	P	I	N	G	D	P	F	I	G	S	L	E	T	P	V	T	S	S	P	L	V	A	W	Y	L	S	N	L	P	G	Y	R	T	A	V	N	P	L	L	R	G	I	E	V	G	L	A	H	G	F	L	L	V	G	P	F	V	K	A	G	P	L	R	N	T	-	E	I	A	G	Q	A	G	S	L	A	A	G	G	L	V	V	I	L	S	I	C	L	T	I	Y	G	I	S	S	F	N	E	G	D	P	S	T	A	P	S	L	T	L	T	G	R	K	K	Q	P	D	Q	L	Q	T	A	D	G	W	A	K	F	T	G	G	F	F	F	G	G	I	S	G	V	I	W	A	F	F	L	L	Y	V	-	-	-	-	-	-	-	-	-	-	-	-	-
N	D	I	I	K	P	F	K	G	D	P	C	L	G	N	L	S	T	P	I	N	D	S	P	L	A	K	A	F	I	N	N	L	P	A	Y	R	K	G	L	T	P	F	M	R	G	L	E	I	G	M	A	H	G	Y	F	L	V	G	P	E	V	V	I	G	P	L	R	E	S	A	H	G	A	N	L	S	G	L	I	T	A	I	Y	I	A	V	S	A	C	L	G	I	S	I	F	A	I	T	T	F	Q	-	G	N	P	K	-	-	G	S	Y	S	S	Y	S	-	K	D	S	L	R	P	L	R	T	R	E	E	W	S	Q	L	N	G	G	I	F	L	G	A	M	G	G	A	I	F	A	Y	L	L	L	E	N	F	D	A	L	D	A	I	L	R	G	A	V	N