PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1fftc2  (  25 )                                                      
d7cohc-  (   4 )    qthayhmvnpspwpltgalSallmtsGltmwfhfnsmtllmiGlttnmlt
                                                                      

                             60        70        80        90        100 
d1fftc2  (  25 )                             kifgfwiylmsdcilFsilfatyav
d7cohc-  (  54 )    myqwwrdvirestfqghhtpavqkglrygmilfiisevlfFtgffwaFyh
                                               aaaa  aaaa  aaaaaaaaa  

                             110       120       130       140       150 
d1fftc2  (  50 )    lvng--------taggptgkdi-felPfvLvetFllLfssityGmaaiAm
d7cohc-  ( 104 )    sSlaptpelggcWpPtgihplnplevPllNtsVLlaSgvsItwAhhsLme
                                             aaaaaaaaaaa              

                             160       170       180       190       200 
d1fftc2  (  91 )    yknnksqViswlalTwlfGagFigmEiyefhhli--vngmgpdrsgflsa
d7cohc-  ( 154 )    --gdrkhMlqALfiTitlGvyFtllqaseyyeApFtisd-----gvYGst
                             aaaaaaaaaaaaaaaaaaaaaaa                 a

                             210       220       230       240       250 
d1fftc2  ( 139 )    ffaLVgtHglhVtsgliwMavlmvqIarrgltstnRtrimcLslfWhfLD
d7cohc-  ( 197 )    FfvATgfHglHViiGstfLivCffrQlkfhFtsnhHfgFeAAawYWhfVd
                    aaaaaaaa  aaaa  aaaaaaaaaaa          aaaaaaaaaaaaa

                             260   
d1fftc2  ( 189 )    vvWicVftvVylmga
d7cohc-  ( 247 )    vvWlfLyvSIYwwGs
                    aaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1fftc2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1fftc2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cytochrome O ubiquinol oxidase, subunit III	Cytochrome c oxidase subunit III-like	Escherichia coli [TaxId: 562]		view
d7cohc- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d7cohc- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Mitochondrial cytochrome c oxidase, subunit III	Cytochrome c oxidase subunit III-like	Cow (Bos taurus) [TaxId: 9913]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Q	T	H	A	Y	H	M	V	N	P	S	P	W	P	L	T	G	A	L	S	A	L	L	M	T	S	G	L	T	M	W	F	H	F	N	S	M	T	L	L	M	I	G	L	T	T	N	M	L	T	M	Y	Q	W	W	R	D	V	I	R	E	S	T	F	Q	G	H	H	T	P	A	V	Q	K	G	L	R	Y	G	M	I	L	F	I	I	S	E	V	L	F	F	T	G	F	F	W	A	F	Y	H	S	S	L	A	P	T	P	E	L	G	G	C	W	P	P	T	G	I	H	P	L	N	P	L	E	V	P	L	L	N	T	S	V	L	L	A	S	G	V	S	I	T	W	A	H	H	S	L	M	E	-	-	G	D	R	K	H	M	L	Q	A	L	F	I	T	I	T	L	G	V	Y	F	T	L	L	Q	A	S	E	Y	Y	E	A	P	F	T	I	S	D	-	-	-	-	-	G	V	Y	G	S	T	F	F	V	A	T	G	F	H	G	L	H	V	I	I	G	S	T	F	L	I	V	C	F	F	R	Q	L	K	F	H	F	T	S	N	H	H	F	G	F	E	A	A	A	W	Y	W	H	F	V	D	V	V	W	L	F	L	Y	V	S	I	Y	W	W	G	S

Member	Chain	UniProtKB	GO term

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Q	T	H	A	Y	H	M	V	N	P	S	P	W	P	L	T	G	A	L	S	A	L	L	M	T	S	G	L	T	M	W	F	H	F	N	S	M	T	L	L	M	I	G	L	T	T	N	M	L	T	M	Y	Q	W	W	R	D	V	I	R	E	S	T	F	Q	G	H	H	T	P	A	V	Q	K	G	L	R	Y	G	M	I	L	F	I	I	S	E	V	L	F	F	T	G	F	F	W	A	F	Y	H	S	S	L	A	P	T	P	E	L	G	G	C	W	P	P	T	G	I	H	P	L	N	P	L	E	V	P	L	L	N	T	S	V	L	L	A	S	G	V	S	I	T	W	A	H	H	S	L	M	E	-	-	G	D	R	K	H	M	L	Q	A	L	F	I	T	I	T	L	G	V	Y	F	T	L	L	Q	A	S	E	Y	Y	E	A	P	F	T	I	S	D	-	-	-	-	-	G	V	Y	G	S	T	F	F	V	A	T	G	F	H	G	L	H	V	I	I	G	S	T	F	L	I	V	C	F	F	R	Q	L	K	F	H	F	T	S	N	H	H	F	G	F	E	A	A	A	W	Y	W	H	F	V	D	V	V	W	L	F	L	Y	V	S	I	Y	W	W	G	S

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Q	T	H	A	Y	H	M	V	N	P	S	P	W	P	L	T	G	A	L	S	A	L	L	M	T	S	G	L	T	M	W	F	H	F	N	S	M	T	L	L	M	I	G	L	T	T	N	M	L	T	M	Y	Q	W	W	R	D	V	I	R	E	S	T	F	Q	G	H	H	T	P	A	V	Q	K	G	L	R	Y	G	M	I	L	F	I	I	S	E	V	L	F	F	T	G	F	F	W	A	F	Y	H	S	S	L	A	P	T	P	E	L	G	G	C	W	P	P	T	G	I	H	P	L	N	P	L	E	V	P	L	L	N	T	S	V	L	L	A	S	G	V	S	I	T	W	A	H	H	S	L	M	E	-	-	G	D	R	K	H	M	L	Q	A	L	F	I	T	I	T	L	G	V	Y	F	T	L	L	Q	A	S	E	Y	Y	E	A	P	F	T	I	S	D	-	-	-	-	-	G	V	Y	G	S	T	F	F	V	A	T	G	F	H	G	L	H	V	I	I	G	S	T	F	L	I	V	C	F	F	R	Q	L	K	F	H	F	T	S	N	H	H	F	G	F	E	A	A	A	W	Y	W	H	F	V	D	V	V	W	L	F	L	Y	V	S	I	Y	W	W	G	S

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Q	T	H	A	Y	H	M	V	N	P	S	P	W	P	L	T	G	A	L	S	A	L	L	M	T	S	G	L	T	M	W	F	H	F	N	S	M	T	L	L	M	I	G	L	T	T	N	M	L	T	M	Y	Q	W	W	R	D	V	I	R	E	S	T	F	Q	G	H	H	T	P	A	V	Q	K	G	L	R	Y	G	M	I	L	F	I	I	S	E	V	L	F	F	T	G	F	F	W	A	F	Y	H	S	S	L	A	P	T	P	E	L	G	G	C	W	P	P	T	G	I	H	P	L	N	P	L	E	V	P	L	L	N	T	S	V	L	L	A	S	G	V	S	I	T	W	A	H	H	S	L	M	E	-	-	G	D	R	K	H	M	L	Q	A	L	F	I	T	I	T	L	G	V	Y	F	T	L	L	Q	A	S	E	Y	Y	E	A	P	F	T	I	S	D	-	-	-	-	-	G	V	Y	G	S	T	F	F	V	A	T	G	F	H	G	L	H	V	I	I	G	S	T	F	L	I	V	C	F	F	R	Q	L	K	F	H	F	T	S	N	H	H	F	G	F	E	A	A	A	W	Y	W	H	F	V	D	V	V	W	L	F	L	Y	V	S	I	Y	W	W	G	S