PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d6m0rd1  (   7 )    sniyaplyapffgfagcaaamvlsclgaaigtaksgigiagigtfkpeli
d6m0rd2  (  90 )         ytlfngfmhlscglcvgfaclssgyaigmvgdvGvrkymhqprlf
d6oqri-  (   3 )          nlnmdllymaaavmmglaaigaaigigilggkflegaarqpdli
                            aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa    333 

                             60        70        80      
d6m0rd1  (  57 )    m----kslipvvmsgilaiyglvvavliagnlspted
d6m0rd2  ( 135 )    v----givlilifsevlglygmivalilntrGs    
d6oqri-  (  47 )    pllrtqffivmglvdaipmiavglGlyvmfavA    
                            aaaaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d6m0rd1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6m0rd1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	F1F0 ATP synthase subunit C or V-type proton ATPase subunit c	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]	view
d6m0rd2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6m0rd2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]	view
d6oqri- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6oqri- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	F1F0 ATP synthase subunit C or V-type proton ATPase subunit c	Escherichia coli [TaxId: 562]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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S	N	I	Y	A	P	L	Y	A	P	F	F	G	F	A	G	C	A	A	A	M	V	L	S	C	L	G	A	A	I	G	T	A	K	S	G	I	G	I	A	G	I	G	T	F	K	P	E	L	I	M	-	-	-	-	K	S	L	I	P	V	V	M	S	G	I	L	A	I	Y	G	L	V	V	A	V	L	I	A	G	N	L	S	P	T	E	D
-	-	-	-	-	Y	T	L	F	N	G	F	M	H	L	S	C	G	L	C	V	G	F	A	C	L	S	S	G	Y	A	I	G	M	V	G	D	V	G	V	R	K	Y	M	H	Q	P	R	L	F	V	-	-	-	-	G	I	V	L	I	L	I	F	S	E	V	L	G	L	Y	G	M	I	V	A	L	I	L	N	T	R	G	S	-	-	-	-
-	-	-	-	-	-	N	L	N	M	D	L	L	Y	M	A	A	A	V	M	M	G	L	A	A	I	G	A	A	I	G	I	G	I	L	G	G	K	F	L	E	G	A	A	R	Q	P	D	L	I	P	L	L	R	T	Q	F	F	I	V	M	G	L	V	D	A	I	P	M	I	A	V	G	L	G	L	Y	V	M	F	A	V	A	-	-	-	-

Member	Chain	UniProtKB	GO term

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S	N	I	Y	A	P	L	Y	A	P	F	F	G	F	A	G	C	A	A	A	M	V	L	S	C	L	G	A	A	I	G	T	A	K	S	G	I	G	I	A	G	I	G	T	F	K	P	E	L	I	M	-	-	-	-	K	S	L	I	P	V	V	M	S	G	I	L	A	I	Y	G	L	V	V	A	V	L	I	A	G	N	L	S	P	T	E	D
-	-	-	-	-	Y	T	L	F	N	G	F	M	H	L	S	C	G	L	C	V	G	F	A	C	L	S	S	G	Y	A	I	G	M	V	G	D	V	G	V	R	K	Y	M	H	Q	P	R	L	F	V	-	-	-	-	G	I	V	L	I	L	I	F	S	E	V	L	G	L	Y	G	M	I	V	A	L	I	L	N	T	R	G	S	-	-	-	-
-	-	-	-	-	-	N	L	N	M	D	L	L	Y	M	A	A	A	V	M	M	G	L	A	A	I	G	A	A	I	G	I	G	I	L	G	G	K	F	L	E	G	A	A	R	Q	P	D	L	I	P	L	L	R	T	Q	F	F	I	V	M	G	L	V	D	A	I	P	M	I	A	V	G	L	G	L	Y	V	M	F	A	V	A	-	-	-	-

									10										20										30										40										50										60										70										80
S	N	I	Y	A	P	L	Y	A	P	F	F	G	F	A	G	C	A	A	A	M	V	L	S	C	L	G	A	A	I	G	T	A	K	S	G	I	G	I	A	G	I	G	T	F	K	P	E	L	I	M	-	-	-	-	K	S	L	I	P	V	V	M	S	G	I	L	A	I	Y	G	L	V	V	A	V	L	I	A	G	N	L	S	P	T	E	D
-	-	-	-	-	Y	T	L	F	N	G	F	M	H	L	S	C	G	L	C	V	G	F	A	C	L	S	S	G	Y	A	I	G	M	V	G	D	V	G	V	R	K	Y	M	H	Q	P	R	L	F	V	-	-	-	-	G	I	V	L	I	L	I	F	S	E	V	L	G	L	Y	G	M	I	V	A	L	I	L	N	T	R	G	S	-	-	-	-
-	-	-	-	-	-	N	L	N	M	D	L	L	Y	M	A	A	A	V	M	M	G	L	A	A	I	G	A	A	I	G	I	G	I	L	G	G	K	F	L	E	G	A	A	R	Q	P	D	L	I	P	L	L	R	T	Q	F	F	I	V	M	G	L	V	D	A	I	P	M	I	A	V	G	L	G	L	Y	V	M	F	A	V	A	-	-	-	-

									10										20										30										40										50										60										70										80
S	N	I	Y	A	P	L	Y	A	P	F	F	G	F	A	G	C	A	A	A	M	V	L	S	C	L	G	A	A	I	G	T	A	K	S	G	I	G	I	A	G	I	G	T	F	K	P	E	L	I	M	-	-	-	-	K	S	L	I	P	V	V	M	S	G	I	L	A	I	Y	G	L	V	V	A	V	L	I	A	G	N	L	S	P	T	E	D
-	-	-	-	-	Y	T	L	F	N	G	F	M	H	L	S	C	G	L	C	V	G	F	A	C	L	S	S	G	Y	A	I	G	M	V	G	D	V	G	V	R	K	Y	M	H	Q	P	R	L	F	V	-	-	-	-	G	I	V	L	I	L	I	F	S	E	V	L	G	L	Y	G	M	I	V	A	L	I	L	N	T	R	G	S	-	-	-	-
-	-	-	-	-	-	N	L	N	M	D	L	L	Y	M	A	A	A	V	M	M	G	L	A	A	I	G	A	A	I	G	I	G	I	L	G	G	K	F	L	E	G	A	A	R	Q	P	D	L	I	P	L	L	R	T	Q	F	F	I	V	M	G	L	V	D	A	I	P	M	I	A	V	G	L	G	L	Y	V	M	F	A	V	A	-	-	-	-