PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1k28a1  (   6 )      nnlnwFvGVVEdr---mDplklGrVrVRVv-glhppqraqgdvmGipt
d2p5zx1  ( 378 )    rpvmagtlpArVtsdiyahid-kdgryrVnLdfdtwk-----------pg
                           bbbbb              bbbb                    

                             60        70        80        90        100 
d1k28a1  (  50 )    ekLpwMsviqpitSaamsgiggsvtgpvegtrVyGhFldkwktnGiVlgt
d2p5zx1  ( 422 )    yeslwVrl-------------------lAgteVsIafeegnpdrpyiagv
                        bb                         bbbbbb       bbbbbb

                             110       120       130 
d1k28a1  ( 100 )    yggivrekpnrleGfsDptgqyprrlgndt
d2p5zx1  ( 468 )    k

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1k28a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1k28a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tail-associated lysozyme gp5, N-terminal domain	gp4 N-terminal domain-like	Bacteriophage T4 [TaxId: 10665]		view
d2p5zx1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2p5zx1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein c3393	gp4 N-terminal domain-like	Escherichia coli o6 [TaxId: 217992]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120										130
-	-	N	N	L	N	W	F	V	G	V	V	E	D	R	-	-	-	M	D	P	L	K	L	G	R	V	R	V	R	V	V	-	G	L	H	P	P	Q	R	A	Q	G	D	V	M	G	I	P	T	E	K	L	P	W	M	S	V	I	Q	P	I	T	S	A	A	M	S	G	I	G	G	S	V	T	G	P	V	E	G	T	R	V	Y	G	H	F	L	D	K	W	K	T	N	G	I	V	L	G	T	Y	G	G	I	V	R	E	K	P	N	R	L	E	G	F	S	D	P	T	G	Q	Y	P	R	R	L	G	N	D	T
R	P	V	M	A	G	T	L	P	A	R	V	T	S	D	I	Y	A	H	I	D	-	K	D	G	R	Y	R	V	N	L	D	F	D	T	W	K	-	-	-	-	-	-	-	-	-	-	-	P	G	Y	E	S	L	W	V	R	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	A	G	T	E	V	S	I	A	F	E	E	G	N	P	D	R	P	Y	I	A	G	V	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1k28a1	A	P16009	GO:0003796
d1k28a1	A	P16009	GO:0005515
d1k28a1	A	P16009	GO:0009253
d1k28a1	A	P16009	GO:0016798
d1k28a1	A	P16009	GO:0016998
d1k28a1	A	P16009	GO:0031640
d1k28a1	A	P16009	GO:0042742
d1k28a1	A	P16009	GO:0042802
d1k28a1	A	P16009	GO:0044409
d1k28a1	A	P16009	GO:0046718
d1k28a1	A	P16009	GO:0098003
d1k28a1	A	P16009	GO:0098015
d1k28a1	A	P16009	GO:0098025
d1k28a1	A	P16009	GO:0098932
d1k28a1	A	P16009	GO:0098994
d1k28a1	A	P17172	GO:0003796
d1k28a1	A	P17172	GO:0005515
d1k28a1	A	P17172	GO:0009253
d1k28a1	A	P17172	GO:0016798
d1k28a1	A	P17172	GO:0016998
d1k28a1	A	P17172	GO:0031640
d1k28a1	A	P17172	GO:0042742
d1k28a1	A	P17172	GO:0042802
d1k28a1	A	P17172	GO:0044409
d1k28a1	A	P17172	GO:0046718
d1k28a1	A	P17172	GO:0098003
d1k28a1	A	P17172	GO:0098015
d1k28a1	A	P17172	GO:0098025
d1k28a1	A	P17172	GO:0098932
d1k28a1	A	P17172	GO:0098994

									10										20										30										40										50										60										70										80										90										100										110										120										130
-	-	N	N	L	N	W	F	V	G	V	V	E	D	R	-	-	-	M	D	P	L	K	L	G	R	V	R	V	R	V	V	-	G	L	H	P	P	Q	R	A	Q	G	D	V	M	G	I	P	T	E	K	L	P	W	M	S	V	I	Q	P	I	T	S	A	A	M	S	G	I	G	G	S	V	T	G	P	V	E	G	T	R	V	Y	G	H	F	L	D	K	W	K	T	N	G	I	V	L	G	T	Y	G	G	I	V	R	E	K	P	N	R	L	E	G	F	S	D	P	T	G	Q	Y	P	R	R	L	G	N	D	T
R	P	V	M	A	G	T	L	P	A	R	V	T	S	D	I	Y	A	H	I	D	-	K	D	G	R	Y	R	V	N	L	D	F	D	T	W	K	-	-	-	-	-	-	-	-	-	-	-	P	G	Y	E	S	L	W	V	R	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	A	G	T	E	V	S	I	A	F	E	E	G	N	P	D	R	P	Y	I	A	G	V	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120										130
-	-	N	N	L	N	W	F	V	G	V	V	E	D	R	-	-	-	M	D	P	L	K	L	G	R	V	R	V	R	V	V	-	G	L	H	P	P	Q	R	A	Q	G	D	V	M	G	I	P	T	E	K	L	P	W	M	S	V	I	Q	P	I	T	S	A	A	M	S	G	I	G	G	S	V	T	G	P	V	E	G	T	R	V	Y	G	H	F	L	D	K	W	K	T	N	G	I	V	L	G	T	Y	G	G	I	V	R	E	K	P	N	R	L	E	G	F	S	D	P	T	G	Q	Y	P	R	R	L	G	N	D	T
R	P	V	M	A	G	T	L	P	A	R	V	T	S	D	I	Y	A	H	I	D	-	K	D	G	R	Y	R	V	N	L	D	F	D	T	W	K	-	-	-	-	-	-	-	-	-	-	-	P	G	Y	E	S	L	W	V	R	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	A	G	T	E	V	S	I	A	F	E	E	G	N	P	D	R	P	Y	I	A	G	V	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120										130
-	-	N	N	L	N	W	F	V	G	V	V	E	D	R	-	-	-	M	D	P	L	K	L	G	R	V	R	V	R	V	V	-	G	L	H	P	P	Q	R	A	Q	G	D	V	M	G	I	P	T	E	K	L	P	W	M	S	V	I	Q	P	I	T	S	A	A	M	S	G	I	G	G	S	V	T	G	P	V	E	G	T	R	V	Y	G	H	F	L	D	K	W	K	T	N	G	I	V	L	G	T	Y	G	G	I	V	R	E	K	P	N	R	L	E	G	F	S	D	P	T	G	Q	Y	P	R	R	L	G	N	D	T
R	P	V	M	A	G	T	L	P	A	R	V	T	S	D	I	Y	A	H	I	D	-	K	D	G	R	Y	R	V	N	L	D	F	D	T	W	K	-	-	-	-	-	-	-	-	-	-	-	P	G	Y	E	S	L	W	V	R	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	A	G	T	E	V	S	I	A	F	E	E	G	N	P	D	R	P	Y	I	A	G	V	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-