PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1r0ka1  ( 291 )    klrqmdfeapdyerfpaltlameSiksggArpaVmnAAneiAvaafldkk
d2egha1  ( 301 )     lsaltfaapdydrypclklameAfeqgqAAttAlnAAneiTvaAflaqq
                                   aaaaaaaaaaaa   aaaaaaaaaaaaaaaaa   

                             60        70        80        90       
d1r0ka1  ( 341 )    igfldiakIVekTLdhytpatpssledvfaIdneAriqAaalmes   
d2egha1  ( 350 )    IrftdiaalNlsVLekmdmrePqcvddvlsvdanArevArkEVmrlas
                        aaaaaaaaaaaa        aaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1r0ka1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1r0ka1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain	Zymomonas mobilis [TaxId: 542]		view
d2egha1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2egha1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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K	L	R	Q	M	D	F	E	A	P	D	Y	E	R	F	P	A	L	T	L	A	M	E	S	I	K	S	G	G	A	R	P	A	V	M	N	A	A	N	E	I	A	V	A	A	F	L	D	K	K	I	G	F	L	D	I	A	K	I	V	E	K	T	L	D	H	Y	T	P	A	T	P	S	S	L	E	D	V	F	A	I	D	N	E	A	R	I	Q	A	A	A	L	M	E	S	-	-	-
-	L	S	A	L	T	F	A	A	P	D	Y	D	R	Y	P	C	L	K	L	A	M	E	A	F	E	Q	G	Q	A	A	T	T	A	L	N	A	A	N	E	I	T	V	A	A	F	L	A	Q	Q	I	R	F	T	D	I	A	A	L	N	L	S	V	L	E	K	M	D	M	R	E	P	Q	C	V	D	D	V	L	S	V	D	A	N	A	R	E	V	A	R	K	E	V	M	R	L	A	S

Member	Chain	UniProtKB	GO term
d1r0ka1	A	Q9X5F2	GO:0008299
d1r0ka1	A	Q9X5F2	GO:0016491
d1r0ka1	A	Q9X5F2	GO:0019288
d1r0ka1	A	Q9X5F2	GO:0030145
d1r0ka1	A	Q9X5F2	GO:0030604
d1r0ka1	A	Q9X5F2	GO:0046872
d1r0ka1	A	Q9X5F2	GO:0051484
d1r0ka1	A	Q9X5F2	GO:0070402
d2egha1	A	P45568	GO:0008299
d2egha1	A	P45568	GO:0016491
d2egha1	A	P45568	GO:0019288
d2egha1	A	P45568	GO:0030145
d2egha1	A	P45568	GO:0030604
d2egha1	A	P45568	GO:0042802
d2egha1	A	P45568	GO:0046872
d2egha1	A	P45568	GO:0051484
d2egha1	A	P45568	GO:0070402
d2egha1	A	P45568	GO:1990065

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K	L	R	Q	M	D	F	E	A	P	D	Y	E	R	F	P	A	L	T	L	A	M	E	S	I	K	S	G	G	A	R	P	A	V	M	N	A	A	N	E	I	A	V	A	A	F	L	D	K	K	I	G	F	L	D	I	A	K	I	V	E	K	T	L	D	H	Y	T	P	A	T	P	S	S	L	E	D	V	F	A	I	D	N	E	A	R	I	Q	A	A	A	L	M	E	S	-	-	-
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K	L	R	Q	M	D	F	E	A	P	D	Y	E	R	F	P	A	L	T	L	A	M	E	S	I	K	S	G	G	A	R	P	A	V	M	N	A	A	N	E	I	A	V	A	A	F	L	D	K	K	I	G	F	L	D	I	A	K	I	V	E	K	T	L	D	H	Y	T	P	A	T	P	S	S	L	E	D	V	F	A	I	D	N	E	A	R	I	Q	A	A	A	L	M	E	S	-	-	-
-	L	S	A	L	T	F	A	A	P	D	Y	D	R	Y	P	C	L	K	L	A	M	E	A	F	E	Q	G	Q	A	A	T	T	A	L	N	A	A	N	E	I	T	V	A	A	F	L	A	Q	Q	I	R	F	T	D	I	A	A	L	N	L	S	V	L	E	K	M	D	M	R	E	P	Q	C	V	D	D	V	L	S	V	D	A	N	A	R	E	V	A	R	K	E	V	M	R	L	A	S

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K	L	R	Q	M	D	F	E	A	P	D	Y	E	R	F	P	A	L	T	L	A	M	E	S	I	K	S	G	G	A	R	P	A	V	M	N	A	A	N	E	I	A	V	A	A	F	L	D	K	K	I	G	F	L	D	I	A	K	I	V	E	K	T	L	D	H	Y	T	P	A	T	P	S	S	L	E	D	V	F	A	I	D	N	E	A	R	I	Q	A	A	A	L	M	E	S	-	-	-
-	L	S	A	L	T	F	A	A	P	D	Y	D	R	Y	P	C	L	K	L	A	M	E	A	F	E	Q	G	Q	A	A	T	T	A	L	N	A	A	N	E	I	T	V	A	A	F	L	A	Q	Q	I	R	F	T	D	I	A	A	L	N	L	S	V	L	E	K	M	D	M	R	E	P	Q	C	V	D	D	V	L	S	V	D	A	N	A	R	E	V	A	R	K	E	V	M	R	L	A	S