PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1h99a1  (  54 )    gamekfktllydipiecmeVSeeIIsyAklqlgkkLnd--sIyvsLtdhI
d1h99a2  ( 169 )              mpniinitkVmeeIlsiVkyhfkieFneeslhyyrFvtdL
                                  aaaaaaaaaaaaaaaaaa        aaaaaaaaaa

                             60        70        80        90        100 
d1h99a1  ( 102 )    nfAiqrnqkgl-dikNallweTkrlykdefaIGkeAlvmVknktgvsLpe
d1h99a2  ( 209 )    kfFAqrlfngthmeddflLdtvkekyhrAyeCTkkIqtyIereyehkLtS
                    aaaaaaaa          aaaaaaa aaaaaaaaaaaaaaaaaa     a

                             110      
d1h99a1  ( 151 )    dEAGfIAlhIvnAelnee
d1h99a2  ( 261 )    deLlyLTiDIerVvk   
                    aaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1h99a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1h99a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Transcriptional antiterminator LicT	PTS-regulatory domain, PRD	Bacillus subtilis [TaxId: 1423]		view
d1h99a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1h99a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Transcriptional antiterminator LicT	PTS-regulatory domain, PRD	Bacillus subtilis [TaxId: 1423]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110
G	A	M	E	K	F	K	T	L	L	Y	D	I	P	I	E	C	M	E	V	S	E	E	I	I	S	Y	A	K	L	Q	L	G	K	K	L	N	D	-	-	S	I	Y	V	S	L	T	D	H	I	N	F	A	I	Q	R	N	Q	K	G	L	-	D	I	K	N	A	L	L	W	E	T	K	R	L	Y	K	D	E	F	A	I	G	K	E	A	L	V	M	V	K	N	K	T	G	V	S	L	P	E	D	E	A	G	F	I	A	L	H	I	V	N	A	E	L	N	E	E
-	-	-	-	-	-	-	-	-	-	M	P	N	I	I	N	I	T	K	V	M	E	E	I	L	S	I	V	K	Y	H	F	K	I	E	F	N	E	E	S	L	H	Y	Y	R	F	V	T	D	L	K	F	F	A	Q	R	L	F	N	G	T	H	M	E	D	D	F	L	L	D	T	V	K	E	K	Y	H	R	A	Y	E	C	T	K	K	I	Q	T	Y	I	E	R	E	Y	E	H	K	L	T	S	D	E	L	L	Y	L	T	I	D	I	E	R	V	V	K	-	-	-

Member	Chain	UniProtKB	GO term
d1h99a1	A	P39805	GO:0003723
d1h99a1	A	P39805	GO:0006355
d1h99a1	A	P39805	GO:0045893
d1h99a1	A	P39805	GO:0003723
d1h99a1	A	P39805	GO:0006355
d1h99a1	A	P39805	GO:0045893
d1h99a2	A	P39805	GO:0003723
d1h99a2	A	P39805	GO:0006355
d1h99a2	A	P39805	GO:0045893
d1h99a2	A	P39805	GO:0003723
d1h99a2	A	P39805	GO:0006355
d1h99a2	A	P39805	GO:0045893

									10										20										30										40										50										60										70										80										90										100										110
G	A	M	E	K	F	K	T	L	L	Y	D	I	P	I	E	C	M	E	V	S	E	E	I	I	S	Y	A	K	L	Q	L	G	K	K	L	N	D	-	-	S	I	Y	V	S	L	T	D	H	I	N	F	A	I	Q	R	N	Q	K	G	L	-	D	I	K	N	A	L	L	W	E	T	K	R	L	Y	K	D	E	F	A	I	G	K	E	A	L	V	M	V	K	N	K	T	G	V	S	L	P	E	D	E	A	G	F	I	A	L	H	I	V	N	A	E	L	N	E	E
-	-	-	-	-	-	-	-	-	-	M	P	N	I	I	N	I	T	K	V	M	E	E	I	L	S	I	V	K	Y	H	F	K	I	E	F	N	E	E	S	L	H	Y	Y	R	F	V	T	D	L	K	F	F	A	Q	R	L	F	N	G	T	H	M	E	D	D	F	L	L	D	T	V	K	E	K	Y	H	R	A	Y	E	C	T	K	K	I	Q	T	Y	I	E	R	E	Y	E	H	K	L	T	S	D	E	L	L	Y	L	T	I	D	I	E	R	V	V	K	-	-	-

									10										20										30										40										50										60										70										80										90										100										110
G	A	M	E	K	F	K	T	L	L	Y	D	I	P	I	E	C	M	E	V	S	E	E	I	I	S	Y	A	K	L	Q	L	G	K	K	L	N	D	-	-	S	I	Y	V	S	L	T	D	H	I	N	F	A	I	Q	R	N	Q	K	G	L	-	D	I	K	N	A	L	L	W	E	T	K	R	L	Y	K	D	E	F	A	I	G	K	E	A	L	V	M	V	K	N	K	T	G	V	S	L	P	E	D	E	A	G	F	I	A	L	H	I	V	N	A	E	L	N	E	E
-	-	-	-	-	-	-	-	-	-	M	P	N	I	I	N	I	T	K	V	M	E	E	I	L	S	I	V	K	Y	H	F	K	I	E	F	N	E	E	S	L	H	Y	Y	R	F	V	T	D	L	K	F	F	A	Q	R	L	F	N	G	T	H	M	E	D	D	F	L	L	D	T	V	K	E	K	Y	H	R	A	Y	E	C	T	K	K	I	Q	T	Y	I	E	R	E	Y	E	H	K	L	T	S	D	E	L	L	Y	L	T	I	D	I	E	R	V	V	K	-	-	-

									10										20										30										40										50										60										70										80										90										100										110
G	A	M	E	K	F	K	T	L	L	Y	D	I	P	I	E	C	M	E	V	S	E	E	I	I	S	Y	A	K	L	Q	L	G	K	K	L	N	D	-	-	S	I	Y	V	S	L	T	D	H	I	N	F	A	I	Q	R	N	Q	K	G	L	-	D	I	K	N	A	L	L	W	E	T	K	R	L	Y	K	D	E	F	A	I	G	K	E	A	L	V	M	V	K	N	K	T	G	V	S	L	P	E	D	E	A	G	F	I	A	L	H	I	V	N	A	E	L	N	E	E
-	-	-	-	-	-	-	-	-	-	M	P	N	I	I	N	I	T	K	V	M	E	E	I	L	S	I	V	K	Y	H	F	K	I	E	F	N	E	E	S	L	H	Y	Y	R	F	V	T	D	L	K	F	F	A	Q	R	L	F	N	G	T	H	M	E	D	D	F	L	L	D	T	V	K	E	K	Y	H	R	A	Y	E	C	T	K	K	I	Q	T	Y	I	E	R	E	Y	E	H	K	L	T	S	D	E	L	L	Y	L	T	I	D	I	E	R	V	V	K	-	-	-