PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1m62a1  ( 376 )                                   tppsikkiihvlekvqyle
d1t7sa-  (  74 )    dkiivgg------------knalVddaGfk-lqyekhnlsnlqkaydlnl
d1ugoa1  (   8 )                              mdmgnqhpSisrlqeiqrevkaie
d3ldqb1  ( 151 )           nspqEevelkkLkh---LeksVeiadqLeeLnkeltgiqqglp
                                                     aaaaaaaaaaaaaaa a

                             60        70        80        90        100 
d1m62a1  ( 395 )    qeve---eFvGkkt--dkaywlleemltkelleldsv----etg------
d1t7sa-  ( 114 )    rdvadlergflekpkqve-gkklekkvkyfneeaerhletldgniitett
d1ugoa1  (  32 )    pqvv---gFsglsd--dknYkrleriltkqlfeidsv----dte------
d3ldqb1  ( 193 )    ------------kdlqaealçkLdrrVkaTieqFmkileeId----tliL
                    aaaa               aaaaaaaaaaaaaaaaa              

                             110       120       130      
d1m62a1  ( 430 )    ---gqdsvrqarkeAvckiqaileklekkGl       
d1t7sa-  ( 165 )    penqakrnrekrktlvngiqtllnqndallrrlqeyqs
d1ugoa1  (  67 )    ---gkgdiqqarkrAaqeterllkeleqnA        
d3ldqb1  ( 227 )    penf--dSrlkrkgLvkkVqaflaeCdtveqiçq    
                         aaaaaaaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1m62a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1m62a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Silencer of death domains, Sodd (Bag4)	BAG domain	Human (Homo sapiens) [TaxId: 9606]	view
d1t7sa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1t7sa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	BAG-family molecular chaperon regulator-1, BAG1	BAG domain	Nematode (Caenorhabditis elegans) [TaxId: 6239]	view
d1ugoa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ugoa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	BAG-family molecular chaperone regulator-5, BAG-5	BAG domain	Mouse (Mus musculus) [TaxId: 10090]	view
d3ldqb1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3ldqb1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	BAG-family molecular chaperon regulator-1, BAG1	BAG domain	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120										130
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	P	P	S	I	K	K	I	I	H	V	L	E	K	V	Q	Y	L	E	Q	E	V	E	-	-	-	E	F	V	G	K	K	T	-	-	D	K	A	Y	W	L	L	E	E	M	L	T	K	E	L	L	E	L	D	S	V	-	-	-	-	E	T	G	-	-	-	-	-	-	-	-	-	G	Q	D	S	V	R	Q	A	R	K	E	A	V	C	K	I	Q	A	I	L	E	K	L	E	K	K	G	L	-	-	-	-	-	-	-
D	K	I	I	V	G	G	-	-	-	-	-	-	-	-	-	-	-	-	K	N	A	L	V	D	D	A	G	F	K	-	L	Q	Y	E	K	H	N	L	S	N	L	Q	K	A	Y	D	L	N	L	R	D	V	A	D	L	E	R	G	F	L	E	K	P	K	Q	V	E	-	G	K	K	L	E	K	K	V	K	Y	F	N	E	E	A	E	R	H	L	E	T	L	D	G	N	I	I	T	E	T	T	P	E	N	Q	A	K	R	N	R	E	K	R	K	T	L	V	N	G	I	Q	T	L	L	N	Q	N	D	A	L	L	R	R	L	Q	E	Y	Q	S
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	D	M	G	N	Q	H	P	S	I	S	R	L	Q	E	I	Q	R	E	V	K	A	I	E	P	Q	V	V	-	-	-	G	F	S	G	L	S	D	-	-	D	K	N	Y	K	R	L	E	R	I	L	T	K	Q	L	F	E	I	D	S	V	-	-	-	-	D	T	E	-	-	-	-	-	-	-	-	-	G	K	G	D	I	Q	Q	A	R	K	R	A	A	Q	E	T	E	R	L	L	K	E	L	E	Q	N	A	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	N	S	P	Q	E	E	V	E	L	K	K	L	K	H	-	-	-	L	E	K	S	V	E	I	A	D	Q	L	E	E	L	N	K	E	L	T	G	I	Q	Q	G	L	P	-	-	-	-	-	-	-	-	-	-	-	-	K	D	L	Q	A	E	A	L	C	K	L	D	R	R	V	K	A	T	I	E	Q	F	M	K	I	L	E	E	I	D	-	-	-	-	T	L	I	L	P	E	N	F	-	-	D	S	R	L	K	R	K	G	L	V	K	K	V	Q	A	F	L	A	E	C	D	T	V	E	Q	I	C	Q	-	-	-	-

Member	Chain	UniProtKB	GO term
d1t7sa_	A	O44739	GO:0051087

									10										20										30										40										50										60										70										80										90										100										110										120										130
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	P	P	S	I	K	K	I	I	H	V	L	E	K	V	Q	Y	L	E	Q	E	V	E	-	-	-	E	F	V	G	K	K	T	-	-	D	K	A	Y	W	L	L	E	E	M	L	T	K	E	L	L	E	L	D	S	V	-	-	-	-	E	T	G	-	-	-	-	-	-	-	-	-	G	Q	D	S	V	R	Q	A	R	K	E	A	V	C	K	I	Q	A	I	L	E	K	L	E	K	K	G	L	-	-	-	-	-	-	-
D	K	I	I	V	G	G	-	-	-	-	-	-	-	-	-	-	-	-	K	N	A	L	V	D	D	A	G	F	K	-	L	Q	Y	E	K	H	N	L	S	N	L	Q	K	A	Y	D	L	N	L	R	D	V	A	D	L	E	R	G	F	L	E	K	P	K	Q	V	E	-	G	K	K	L	E	K	K	V	K	Y	F	N	E	E	A	E	R	H	L	E	T	L	D	G	N	I	I	T	E	T	T	P	E	N	Q	A	K	R	N	R	E	K	R	K	T	L	V	N	G	I	Q	T	L	L	N	Q	N	D	A	L	L	R	R	L	Q	E	Y	Q	S
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	D	M	G	N	Q	H	P	S	I	S	R	L	Q	E	I	Q	R	E	V	K	A	I	E	P	Q	V	V	-	-	-	G	F	S	G	L	S	D	-	-	D	K	N	Y	K	R	L	E	R	I	L	T	K	Q	L	F	E	I	D	S	V	-	-	-	-	D	T	E	-	-	-	-	-	-	-	-	-	G	K	G	D	I	Q	Q	A	R	K	R	A	A	Q	E	T	E	R	L	L	K	E	L	E	Q	N	A	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	N	S	P	Q	E	E	V	E	L	K	K	L	K	H	-	-	-	L	E	K	S	V	E	I	A	D	Q	L	E	E	L	N	K	E	L	T	G	I	Q	Q	G	L	P	-	-	-	-	-	-	-	-	-	-	-	-	K	D	L	Q	A	E	A	L	C	K	L	D	R	R	V	K	A	T	I	E	Q	F	M	K	I	L	E	E	I	D	-	-	-	-	T	L	I	L	P	E	N	F	-	-	D	S	R	L	K	R	K	G	L	V	K	K	V	Q	A	F	L	A	E	C	D	T	V	E	Q	I	C	Q	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120										130
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	P	P	S	I	K	K	I	I	H	V	L	E	K	V	Q	Y	L	E	Q	E	V	E	-	-	-	E	F	V	G	K	K	T	-	-	D	K	A	Y	W	L	L	E	E	M	L	T	K	E	L	L	E	L	D	S	V	-	-	-	-	E	T	G	-	-	-	-	-	-	-	-	-	G	Q	D	S	V	R	Q	A	R	K	E	A	V	C	K	I	Q	A	I	L	E	K	L	E	K	K	G	L	-	-	-	-	-	-	-
D	K	I	I	V	G	G	-	-	-	-	-	-	-	-	-	-	-	-	K	N	A	L	V	D	D	A	G	F	K	-	L	Q	Y	E	K	H	N	L	S	N	L	Q	K	A	Y	D	L	N	L	R	D	V	A	D	L	E	R	G	F	L	E	K	P	K	Q	V	E	-	G	K	K	L	E	K	K	V	K	Y	F	N	E	E	A	E	R	H	L	E	T	L	D	G	N	I	I	T	E	T	T	P	E	N	Q	A	K	R	N	R	E	K	R	K	T	L	V	N	G	I	Q	T	L	L	N	Q	N	D	A	L	L	R	R	L	Q	E	Y	Q	S
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	D	M	G	N	Q	H	P	S	I	S	R	L	Q	E	I	Q	R	E	V	K	A	I	E	P	Q	V	V	-	-	-	G	F	S	G	L	S	D	-	-	D	K	N	Y	K	R	L	E	R	I	L	T	K	Q	L	F	E	I	D	S	V	-	-	-	-	D	T	E	-	-	-	-	-	-	-	-	-	G	K	G	D	I	Q	Q	A	R	K	R	A	A	Q	E	T	E	R	L	L	K	E	L	E	Q	N	A	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	N	S	P	Q	E	E	V	E	L	K	K	L	K	H	-	-	-	L	E	K	S	V	E	I	A	D	Q	L	E	E	L	N	K	E	L	T	G	I	Q	Q	G	L	P	-	-	-	-	-	-	-	-	-	-	-	-	K	D	L	Q	A	E	A	L	C	K	L	D	R	R	V	K	A	T	I	E	Q	F	M	K	I	L	E	E	I	D	-	-	-	-	T	L	I	L	P	E	N	F	-	-	D	S	R	L	K	R	K	G	L	V	K	K	V	Q	A	F	L	A	E	C	D	T	V	E	Q	I	C	Q	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120										130
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	P	P	S	I	K	K	I	I	H	V	L	E	K	V	Q	Y	L	E	Q	E	V	E	-	-	-	E	F	V	G	K	K	T	-	-	D	K	A	Y	W	L	L	E	E	M	L	T	K	E	L	L	E	L	D	S	V	-	-	-	-	E	T	G	-	-	-	-	-	-	-	-	-	G	Q	D	S	V	R	Q	A	R	K	E	A	V	C	K	I	Q	A	I	L	E	K	L	E	K	K	G	L	-	-	-	-	-	-	-
D	K	I	I	V	G	G	-	-	-	-	-	-	-	-	-	-	-	-	K	N	A	L	V	D	D	A	G	F	K	-	L	Q	Y	E	K	H	N	L	S	N	L	Q	K	A	Y	D	L	N	L	R	D	V	A	D	L	E	R	G	F	L	E	K	P	K	Q	V	E	-	G	K	K	L	E	K	K	V	K	Y	F	N	E	E	A	E	R	H	L	E	T	L	D	G	N	I	I	T	E	T	T	P	E	N	Q	A	K	R	N	R	E	K	R	K	T	L	V	N	G	I	Q	T	L	L	N	Q	N	D	A	L	L	R	R	L	Q	E	Y	Q	S
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	D	M	G	N	Q	H	P	S	I	S	R	L	Q	E	I	Q	R	E	V	K	A	I	E	P	Q	V	V	-	-	-	G	F	S	G	L	S	D	-	-	D	K	N	Y	K	R	L	E	R	I	L	T	K	Q	L	F	E	I	D	S	V	-	-	-	-	D	T	E	-	-	-	-	-	-	-	-	-	G	K	G	D	I	Q	Q	A	R	K	R	A	A	Q	E	T	E	R	L	L	K	E	L	E	Q	N	A	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	N	S	P	Q	E	E	V	E	L	K	K	L	K	H	-	-	-	L	E	K	S	V	E	I	A	D	Q	L	E	E	L	N	K	E	L	T	G	I	Q	Q	G	L	P	-	-	-	-	-	-	-	-	-	-	-	-	K	D	L	Q	A	E	A	L	C	K	L	D	R	R	V	K	A	T	I	E	Q	F	M	K	I	L	E	E	I	D	-	-	-	-	T	L	I	L	P	E	N	F	-	-	D	S	R	L	K	R	K	G	L	V	K	K	V	Q	A	F	L	A	E	C	D	T	V	E	Q	I	C	Q	-	-	-	-