PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1exta1  (  13 )    svÇp----qgkyihpqnns--içÇtkÇhkgtyLyndÇpgpgqdTdçre--
d1exta3  ( 116 )    nçSlÇl---nGtvhlsçqekqnTvÇtÇhagfFlr-----en---eÇvsçs
d2heyr1  (  83 )    pçtwÇnlrsGSerkqlçtatqdTvÇrÇragTqplds---ykpGvdÇap--
d2heyr3  (  29 )    lhÇv----gdtypsn---d--rçÇheÇrpgngMvsrÇ-srsqntvçrp--
d3wvta1  (  40 )    pqÇk----eeeypvg---t--eçÇpkÇspgyrvkqaç-geltgTvçvp--
                              bbbb         bb     bbbb          bbbb  

                             60        70  
d1exta1  (  55 )    -ÇesgsfTasenhlrhÇl     
d1exta3  ( 155 )    nçkk----sle-Çtklçlpqien
d2heyr1  ( 128 )    -çppghfSpGd-nq-aÇk     
d2heyr3  (  67 )    -çgpgfyNdvvssk-pçk     
d3wvta1  (  78 )    -çaprtfSahlnGlskÇlpcr

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1exta1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1exta1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tumor necrosis factor (TNF) receptor, N-terminal domain	TNF receptor-like	Human (Homo sapiens) [TaxId: 9606]	view
d1exta3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1exta3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tumor necrosis factor (TNF) receptor, C-terminal domain	TNF receptor-like	Human (Homo sapiens) [TaxId: 9606]	view
d2heyr1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2heyr1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tumor necrosis factor receptor superfamily member 4, OX40L receptor, N-terminal and middle domain	TNF receptor-like	Human (Homo sapiens) [TaxId: 9606]	view
d2heyr3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2heyr3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tumor necrosis factor receptor superfamily member 4, OX40L receptor, N-terminal and middle domain	TNF receptor-like	Human (Homo sapiens) [TaxId: 9606]	view
d3wvta1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3wvta1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Horse (Equus caballus) [TaxId: 9796]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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S	V	C	P	-	-	-	-	Q	G	K	Y	I	H	P	Q	N	N	S	-	-	I	C	C	T	K	C	H	K	G	T	Y	L	Y	N	D	C	P	G	P	G	Q	D	T	D	C	R	E	-	-	-	C	E	S	G	S	F	T	A	S	E	N	H	L	R	H	C	L	-	-	-	-	-
N	C	S	L	C	L	-	-	-	N	G	T	V	H	L	S	C	Q	E	K	Q	N	T	V	C	T	C	H	A	G	F	F	L	R	-	-	-	-	-	E	N	-	-	-	E	C	V	S	C	S	N	C	K	K	-	-	-	-	S	L	E	-	C	T	K	L	C	L	P	Q	I	E	N
P	C	T	W	C	N	L	R	S	G	S	E	R	K	Q	L	C	T	A	T	Q	D	T	V	C	R	C	R	A	G	T	Q	P	L	D	S	-	-	-	Y	K	P	G	V	D	C	A	P	-	-	-	C	P	P	G	H	F	S	P	G	D	-	N	Q	-	A	C	K	-	-	-	-	-
L	H	C	V	-	-	-	-	G	D	T	Y	P	S	N	-	-	-	D	-	-	R	C	C	H	E	C	R	P	G	N	G	M	V	S	R	C	-	S	R	S	Q	N	T	V	C	R	P	-	-	-	C	G	P	G	F	Y	N	D	V	V	S	S	K	-	P	C	K	-	-	-	-	-
P	Q	C	K	-	-	-	-	E	E	E	Y	P	V	G	-	-	-	T	-	-	E	C	C	P	K	C	S	P	G	Y	R	V	K	Q	A	C	-	G	E	L	T	G	T	V	C	V	P	-	-	-	C	A	P	R	T	F	S	A	H	L	N	G	L	S	K	C	L	P	C	R	-	-

Member	Chain	UniProtKB	GO term
d1exta1	A	P19438	GO:0005031
d1exta1	A	P19438	GO:0006693
d1exta1	A	P19438	GO:0006954
d1exta1	A	P19438	GO:0033209
d1exta1	A	P19438	GO:0005031
d1exta1	A	P19438	GO:0006693
d1exta1	A	P19438	GO:0006954
d1exta1	A	P19438	GO:0033209
d1exta1	A	P19438	GO:0005031
d1exta1	A	P19438	GO:0006693
d1exta1	A	P19438	GO:0006954
d1exta1	A	P19438	GO:0033209
d1exta1	A	P19438	GO:0005031
d1exta1	A	P19438	GO:0006693
d1exta1	A	P19438	GO:0006954
d1exta1	A	P19438	GO:0033209
d1exta1	A	P19438	GO:0005031
d1exta1	A	P19438	GO:0006693
d1exta1	A	P19438	GO:0006954
d1exta1	A	P19438	GO:0033209
d1exta1	A	P19438	GO:0005031
d1exta1	A	P19438	GO:0006693
d1exta1	A	P19438	GO:0006954
d1exta1	A	P19438	GO:0033209
d1exta3	A	P19438	GO:0005031
d1exta3	A	P19438	GO:0006693
d1exta3	A	P19438	GO:0006954
d1exta3	A	P19438	GO:0033209
d1exta3	A	P19438	GO:0005031
d1exta3	A	P19438	GO:0006693
d1exta3	A	P19438	GO:0006954
d1exta3	A	P19438	GO:0033209
d1exta3	A	P19438	GO:0005031
d1exta3	A	P19438	GO:0006693
d1exta3	A	P19438	GO:0006954
d1exta3	A	P19438	GO:0033209
d1exta3	A	P19438	GO:0005031
d1exta3	A	P19438	GO:0006693
d1exta3	A	P19438	GO:0006954
d1exta3	A	P19438	GO:0033209
d1exta3	A	P19438	GO:0005031
d1exta3	A	P19438	GO:0006693
d1exta3	A	P19438	GO:0006954
d1exta3	A	P19438	GO:0033209
d1exta3	A	P19438	GO:0005031
d1exta3	A	P19438	GO:0006693
d1exta3	A	P19438	GO:0006954
d1exta3	A	P19438	GO:0033209
d2heyr1	R	P43488	GO:0005031
d2heyr1	R	P43488	GO:0006954
d2heyr1	R	P43489	GO:0005031
d2heyr1	R	P43489	GO:0006954
d2heyr1	R	P43488	GO:0005031
d2heyr1	R	P43488	GO:0006954
d2heyr1	R	P43489	GO:0005031
d2heyr1	R	P43489	GO:0006954
d2heyr1	R	P43488	GO:0005031
d2heyr1	R	P43488	GO:0006954
d2heyr1	R	P43489	GO:0005031
d2heyr1	R	P43489	GO:0006954
d2heyr1	R	P43488	GO:0005031
d2heyr1	R	P43488	GO:0006954
d2heyr1	R	P43489	GO:0005031
d2heyr1	R	P43489	GO:0006954
d2heyr3	R	P43488	GO:0005031
d2heyr3	R	P43488	GO:0006954
d2heyr3	R	P43489	GO:0005031
d2heyr3	R	P43489	GO:0006954
d2heyr3	R	P43488	GO:0005031
d2heyr3	R	P43488	GO:0006954
d2heyr3	R	P43489	GO:0005031
d2heyr3	R	P43489	GO:0006954
d2heyr3	R	P43488	GO:0005031
d2heyr3	R	P43488	GO:0006954
d2heyr3	R	P43489	GO:0005031
d2heyr3	R	P43489	GO:0006954
d2heyr3	R	P43488	GO:0005031
d2heyr3	R	P43488	GO:0006954
d2heyr3	R	P43489	GO:0005031
d2heyr3	R	P43489	GO:0006954

									10										20										30										40										50										60										70
S	V	C	P	-	-	-	-	Q	G	K	Y	I	H	P	Q	N	N	S	-	-	I	C	C	T	K	C	H	K	G	T	Y	L	Y	N	D	C	P	G	P	G	Q	D	T	D	C	R	E	-	-	-	C	E	S	G	S	F	T	A	S	E	N	H	L	R	H	C	L	-	-	-	-	-
N	C	S	L	C	L	-	-	-	N	G	T	V	H	L	S	C	Q	E	K	Q	N	T	V	C	T	C	H	A	G	F	F	L	R	-	-	-	-	-	E	N	-	-	-	E	C	V	S	C	S	N	C	K	K	-	-	-	-	S	L	E	-	C	T	K	L	C	L	P	Q	I	E	N
P	C	T	W	C	N	L	R	S	G	S	E	R	K	Q	L	C	T	A	T	Q	D	T	V	C	R	C	R	A	G	T	Q	P	L	D	S	-	-	-	Y	K	P	G	V	D	C	A	P	-	-	-	C	P	P	G	H	F	S	P	G	D	-	N	Q	-	A	C	K	-	-	-	-	-
L	H	C	V	-	-	-	-	G	D	T	Y	P	S	N	-	-	-	D	-	-	R	C	C	H	E	C	R	P	G	N	G	M	V	S	R	C	-	S	R	S	Q	N	T	V	C	R	P	-	-	-	C	G	P	G	F	Y	N	D	V	V	S	S	K	-	P	C	K	-	-	-	-	-
P	Q	C	K	-	-	-	-	E	E	E	Y	P	V	G	-	-	-	T	-	-	E	C	C	P	K	C	S	P	G	Y	R	V	K	Q	A	C	-	G	E	L	T	G	T	V	C	V	P	-	-	-	C	A	P	R	T	F	S	A	H	L	N	G	L	S	K	C	L	P	C	R	-	-

									10										20										30										40										50										60										70
S	V	C	P	-	-	-	-	Q	G	K	Y	I	H	P	Q	N	N	S	-	-	I	C	C	T	K	C	H	K	G	T	Y	L	Y	N	D	C	P	G	P	G	Q	D	T	D	C	R	E	-	-	-	C	E	S	G	S	F	T	A	S	E	N	H	L	R	H	C	L	-	-	-	-	-
N	C	S	L	C	L	-	-	-	N	G	T	V	H	L	S	C	Q	E	K	Q	N	T	V	C	T	C	H	A	G	F	F	L	R	-	-	-	-	-	E	N	-	-	-	E	C	V	S	C	S	N	C	K	K	-	-	-	-	S	L	E	-	C	T	K	L	C	L	P	Q	I	E	N
P	C	T	W	C	N	L	R	S	G	S	E	R	K	Q	L	C	T	A	T	Q	D	T	V	C	R	C	R	A	G	T	Q	P	L	D	S	-	-	-	Y	K	P	G	V	D	C	A	P	-	-	-	C	P	P	G	H	F	S	P	G	D	-	N	Q	-	A	C	K	-	-	-	-	-
L	H	C	V	-	-	-	-	G	D	T	Y	P	S	N	-	-	-	D	-	-	R	C	C	H	E	C	R	P	G	N	G	M	V	S	R	C	-	S	R	S	Q	N	T	V	C	R	P	-	-	-	C	G	P	G	F	Y	N	D	V	V	S	S	K	-	P	C	K	-	-	-	-	-
P	Q	C	K	-	-	-	-	E	E	E	Y	P	V	G	-	-	-	T	-	-	E	C	C	P	K	C	S	P	G	Y	R	V	K	Q	A	C	-	G	E	L	T	G	T	V	C	V	P	-	-	-	C	A	P	R	T	F	S	A	H	L	N	G	L	S	K	C	L	P	C	R	-	-

									10										20										30										40										50										60										70
S	V	C	P	-	-	-	-	Q	G	K	Y	I	H	P	Q	N	N	S	-	-	I	C	C	T	K	C	H	K	G	T	Y	L	Y	N	D	C	P	G	P	G	Q	D	T	D	C	R	E	-	-	-	C	E	S	G	S	F	T	A	S	E	N	H	L	R	H	C	L	-	-	-	-	-
N	C	S	L	C	L	-	-	-	N	G	T	V	H	L	S	C	Q	E	K	Q	N	T	V	C	T	C	H	A	G	F	F	L	R	-	-	-	-	-	E	N	-	-	-	E	C	V	S	C	S	N	C	K	K	-	-	-	-	S	L	E	-	C	T	K	L	C	L	P	Q	I	E	N
P	C	T	W	C	N	L	R	S	G	S	E	R	K	Q	L	C	T	A	T	Q	D	T	V	C	R	C	R	A	G	T	Q	P	L	D	S	-	-	-	Y	K	P	G	V	D	C	A	P	-	-	-	C	P	P	G	H	F	S	P	G	D	-	N	Q	-	A	C	K	-	-	-	-	-
L	H	C	V	-	-	-	-	G	D	T	Y	P	S	N	-	-	-	D	-	-	R	C	C	H	E	C	R	P	G	N	G	M	V	S	R	C	-	S	R	S	Q	N	T	V	C	R	P	-	-	-	C	G	P	G	F	Y	N	D	V	V	S	S	K	-	P	C	K	-	-	-	-	-
P	Q	C	K	-	-	-	-	E	E	E	Y	P	V	G	-	-	-	T	-	-	E	C	C	P	K	C	S	P	G	Y	R	V	K	Q	A	C	-	G	E	L	T	G	T	V	C	V	P	-	-	-	C	A	P	R	T	F	S	A	H	L	N	G	L	S	K	C	L	P	C	R	-	-