PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1exta2  (  72 )    sçskÇrkemgQveissçtvdrdTvçG-Çrk---nqyrhyws-enlfqÇf 
d1sg1x2  (  57 )    pçteçlg--lqsmsapçveaddAvçr-Çay---gyyqdeet-g---hÇe 
d1sg1x3  (  96 )    açsvÇev--gsGlvfsçqdkqnTvçeeÇpe---gtySde-a-nhvdpÇl 
d1xu1r-  (  68 )    sl-sçrkeqGkFydh---llrdçis---Çasiçg------------qhpk
d1xu2r-  (   8 )        çs--qneyfds---llhaçip---Çqlrçs----------sntppl
d3wvta2  (  98 )       pÇdpamgLvirrdcsstenteÇg-çdq---ghfçvsekgddçveÇq-
d4i9xc2  ( 115 )    rçtrçds--gevelspçtttrnTvÇq-Çee---gtfreeds-p---eçr 
d4i9xc3  ( 156 )    çrtgçprg---vkvgdçtpwsdIçv                         
                              bbbb         bb                         

                            
d1exta2                     
d1sg1x2                     
d1sg1x3                     
d1xu1r-  (  99 )    qÇayfÇe 
d1xu2r-  (  36 )    tÇqryçna
d3wvta2  ( 140 )    ------ph
d4i9xc2                     
d4i9xc3

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1exta2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1exta2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tumor necrosis factor (TNF) receptor, middle domain	TNF receptor-like	Human (Homo sapiens) [TaxId: 9606]	view
d1sg1x2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1sg1x2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Low affinity neurotrophin receptor p75NTR, domain 2 and domain 3	TNF receptor-like	Norway rat (Rattus norvegicus) [TaxId: 10116]	view
d1sg1x3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1sg1x3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Low affinity neurotrophin receptor p75NTR, domain 2 and domain 3	TNF receptor-like	Norway rat (Rattus norvegicus) [TaxId: 10116]	view
d1xu1r- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1xu1r- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tumor necrosis factor receptor superfamily member 13B, TACI	BAFF receptor-like	Human (Homo sapiens) [TaxId: 9606]	view
d1xu2r- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1xu2r- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tumor necrosis factor receptor superfamily member 17, BCMA	BAFF receptor-like	Human (Homo sapiens) [TaxId: 9606]	view
d3wvta2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3wvta2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Horse (Equus caballus) [TaxId: 9796]	view
d4i9xc2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4i9xc2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view
d4i9xc3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4i9xc3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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S	C	S	K	C	R	K	E	M	G	Q	V	E	I	S	S	C	T	V	D	R	D	T	V	C	G	-	C	R	K	-	-	-	N	Q	Y	R	H	Y	W	S	-	E	N	L	F	Q	C	F	-	-	-	-	-	-	-	-	-
P	C	T	E	C	L	G	-	-	L	Q	S	M	S	A	P	C	V	E	A	D	D	A	V	C	R	-	C	A	Y	-	-	-	G	Y	Y	Q	D	E	E	T	-	G	-	-	-	H	C	E	-	-	-	-	-	-	-	-	-
A	C	S	V	C	E	V	-	-	G	S	G	L	V	F	S	C	Q	D	K	Q	N	T	V	C	E	E	C	P	E	-	-	-	G	T	Y	S	D	E	-	A	-	N	H	V	D	P	C	L	-	-	-	-	-	-	-	-	-
S	L	-	S	C	R	K	E	Q	G	K	F	Y	D	H	-	-	-	L	L	R	D	C	I	S	-	-	-	C	A	S	I	C	G	-	-	-	-	-	-	-	-	-	-	-	-	Q	H	P	K	Q	C	A	Y	F	C	E	-
-	-	-	-	C	S	-	-	Q	N	E	Y	F	D	S	-	-	-	L	L	H	A	C	I	P	-	-	-	C	Q	L	R	C	S	-	-	-	-	-	-	-	-	-	-	S	N	T	P	P	L	T	C	Q	R	Y	C	N	A
-	-	-	P	C	D	P	A	M	G	L	V	I	R	R	D	C	S	S	T	E	N	T	E	C	G	-	C	D	Q	-	-	-	G	H	F	C	V	S	E	K	G	D	D	C	V	E	C	Q	-	-	-	-	-	-	-	P	H
R	C	T	R	C	D	S	-	-	G	E	V	E	L	S	P	C	T	T	T	R	N	T	V	C	Q	-	C	E	E	-	-	-	G	T	F	R	E	E	D	S	-	P	-	-	-	E	C	R	-	-	-	-	-	-	-	-	-
C	R	T	G	C	P	R	G	-	-	-	V	K	V	G	D	C	T	P	W	S	D	I	C	V	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1exta2	A	P19438	GO:0005031
d1exta2	A	P19438	GO:0006693
d1exta2	A	P19438	GO:0006954
d1exta2	A	P19438	GO:0033209
d1exta2	A	P19438	GO:0005031
d1exta2	A	P19438	GO:0006693
d1exta2	A	P19438	GO:0006954
d1exta2	A	P19438	GO:0033209
d1exta2	A	P19438	GO:0005031
d1exta2	A	P19438	GO:0006693
d1exta2	A	P19438	GO:0006954
d1exta2	A	P19438	GO:0033209
d1exta2	A	P19438	GO:0005031
d1exta2	A	P19438	GO:0006693
d1exta2	A	P19438	GO:0006954
d1exta2	A	P19438	GO:0033209
d1exta2	A	P19438	GO:0005031
d1exta2	A	P19438	GO:0006693
d1exta2	A	P19438	GO:0006954
d1exta2	A	P19438	GO:0033209
d1exta2	A	P19438	GO:0005031
d1exta2	A	P19438	GO:0006693
d1exta2	A	P19438	GO:0006954
d1exta2	A	P19438	GO:0033209
d1xu1r_	R	Q9D777	GO:0005886
d1xu1r_	R	O14836	GO:0005886
d1xu1r_	R	Q9D777	GO:0005886
d1xu1r_	R	O14836	GO:0005886
d1xu1r_	R	Q9D777	GO:0005886
d1xu1r_	R	O14836	GO:0005886

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S	C	S	K	C	R	K	E	M	G	Q	V	E	I	S	S	C	T	V	D	R	D	T	V	C	G	-	C	R	K	-	-	-	N	Q	Y	R	H	Y	W	S	-	E	N	L	F	Q	C	F	-	-	-	-	-	-	-	-	-
P	C	T	E	C	L	G	-	-	L	Q	S	M	S	A	P	C	V	E	A	D	D	A	V	C	R	-	C	A	Y	-	-	-	G	Y	Y	Q	D	E	E	T	-	G	-	-	-	H	C	E	-	-	-	-	-	-	-	-	-
A	C	S	V	C	E	V	-	-	G	S	G	L	V	F	S	C	Q	D	K	Q	N	T	V	C	E	E	C	P	E	-	-	-	G	T	Y	S	D	E	-	A	-	N	H	V	D	P	C	L	-	-	-	-	-	-	-	-	-
S	L	-	S	C	R	K	E	Q	G	K	F	Y	D	H	-	-	-	L	L	R	D	C	I	S	-	-	-	C	A	S	I	C	G	-	-	-	-	-	-	-	-	-	-	-	-	Q	H	P	K	Q	C	A	Y	F	C	E	-
-	-	-	-	C	S	-	-	Q	N	E	Y	F	D	S	-	-	-	L	L	H	A	C	I	P	-	-	-	C	Q	L	R	C	S	-	-	-	-	-	-	-	-	-	-	S	N	T	P	P	L	T	C	Q	R	Y	C	N	A
-	-	-	P	C	D	P	A	M	G	L	V	I	R	R	D	C	S	S	T	E	N	T	E	C	G	-	C	D	Q	-	-	-	G	H	F	C	V	S	E	K	G	D	D	C	V	E	C	Q	-	-	-	-	-	-	-	P	H
R	C	T	R	C	D	S	-	-	G	E	V	E	L	S	P	C	T	T	T	R	N	T	V	C	Q	-	C	E	E	-	-	-	G	T	F	R	E	E	D	S	-	P	-	-	-	E	C	R	-	-	-	-	-	-	-	-	-
C	R	T	G	C	P	R	G	-	-	-	V	K	V	G	D	C	T	P	W	S	D	I	C	V	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50
S	C	S	K	C	R	K	E	M	G	Q	V	E	I	S	S	C	T	V	D	R	D	T	V	C	G	-	C	R	K	-	-	-	N	Q	Y	R	H	Y	W	S	-	E	N	L	F	Q	C	F	-	-	-	-	-	-	-	-	-
P	C	T	E	C	L	G	-	-	L	Q	S	M	S	A	P	C	V	E	A	D	D	A	V	C	R	-	C	A	Y	-	-	-	G	Y	Y	Q	D	E	E	T	-	G	-	-	-	H	C	E	-	-	-	-	-	-	-	-	-
A	C	S	V	C	E	V	-	-	G	S	G	L	V	F	S	C	Q	D	K	Q	N	T	V	C	E	E	C	P	E	-	-	-	G	T	Y	S	D	E	-	A	-	N	H	V	D	P	C	L	-	-	-	-	-	-	-	-	-
S	L	-	S	C	R	K	E	Q	G	K	F	Y	D	H	-	-	-	L	L	R	D	C	I	S	-	-	-	C	A	S	I	C	G	-	-	-	-	-	-	-	-	-	-	-	-	Q	H	P	K	Q	C	A	Y	F	C	E	-
-	-	-	-	C	S	-	-	Q	N	E	Y	F	D	S	-	-	-	L	L	H	A	C	I	P	-	-	-	C	Q	L	R	C	S	-	-	-	-	-	-	-	-	-	-	S	N	T	P	P	L	T	C	Q	R	Y	C	N	A
-	-	-	P	C	D	P	A	M	G	L	V	I	R	R	D	C	S	S	T	E	N	T	E	C	G	-	C	D	Q	-	-	-	G	H	F	C	V	S	E	K	G	D	D	C	V	E	C	Q	-	-	-	-	-	-	-	P	H
R	C	T	R	C	D	S	-	-	G	E	V	E	L	S	P	C	T	T	T	R	N	T	V	C	Q	-	C	E	E	-	-	-	G	T	F	R	E	E	D	S	-	P	-	-	-	E	C	R	-	-	-	-	-	-	-	-	-
C	R	T	G	C	P	R	G	-	-	-	V	K	V	G	D	C	T	P	W	S	D	I	C	V	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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S	C	S	K	C	R	K	E	M	G	Q	V	E	I	S	S	C	T	V	D	R	D	T	V	C	G	-	C	R	K	-	-	-	N	Q	Y	R	H	Y	W	S	-	E	N	L	F	Q	C	F	-	-	-	-	-	-	-	-	-
P	C	T	E	C	L	G	-	-	L	Q	S	M	S	A	P	C	V	E	A	D	D	A	V	C	R	-	C	A	Y	-	-	-	G	Y	Y	Q	D	E	E	T	-	G	-	-	-	H	C	E	-	-	-	-	-	-	-	-	-
A	C	S	V	C	E	V	-	-	G	S	G	L	V	F	S	C	Q	D	K	Q	N	T	V	C	E	E	C	P	E	-	-	-	G	T	Y	S	D	E	-	A	-	N	H	V	D	P	C	L	-	-	-	-	-	-	-	-	-
S	L	-	S	C	R	K	E	Q	G	K	F	Y	D	H	-	-	-	L	L	R	D	C	I	S	-	-	-	C	A	S	I	C	G	-	-	-	-	-	-	-	-	-	-	-	-	Q	H	P	K	Q	C	A	Y	F	C	E	-
-	-	-	-	C	S	-	-	Q	N	E	Y	F	D	S	-	-	-	L	L	H	A	C	I	P	-	-	-	C	Q	L	R	C	S	-	-	-	-	-	-	-	-	-	-	S	N	T	P	P	L	T	C	Q	R	Y	C	N	A
-	-	-	P	C	D	P	A	M	G	L	V	I	R	R	D	C	S	S	T	E	N	T	E	C	G	-	C	D	Q	-	-	-	G	H	F	C	V	S	E	K	G	D	D	C	V	E	C	Q	-	-	-	-	-	-	-	P	H
R	C	T	R	C	D	S	-	-	G	E	V	E	L	S	P	C	T	T	T	R	N	T	V	C	Q	-	C	E	E	-	-	-	G	T	F	R	E	E	D	S	-	P	-	-	-	E	C	R	-	-	-	-	-	-	-	-	-
C	R	T	G	C	P	R	G	-	-	-	V	K	V	G	D	C	T	P	W	S	D	I	C	V	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-