PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1i5pa3  (   1 )    mnnvlnsgrtticdaynvvahdpfsfehksldtIqkewmewkr-tdhsly
d1w99a1  (  84 )                                                      
d2qkga1  (   1 )                            iser-dAvktAisLvgtIlgklgvpl
                                                                      

                             60        70        80        90        100 
d1i5pa3  (  50 )    VApVVGTVssFLlkkvgsliGkrILseLwgiIFpsgstnlMqdILreTEq
d1w99a1  (  84 )                                             tpervwNDf
d2qkga1  (  26 )    vgpIvslYstLIdvLwpg-----------------gks-qWeiFMeQVea
                                                                      

                             110       120       130       140       150 
d1i5pa3  ( 100 )    fln------qrLntdtlarVnaELigLqanIreFnqqVdnfl-nptqnpv
d1w99a1  (  93 )    mtntgnlidqtvtayvrtdAnakmtvVkdyldqYttkfntWkrepnnqsy
d2qkga1  (  58 )    Lin------qkIaeyarakAlaeLegLGnnYqlYltALeeWqenpsstrv
                                 aaaaaaaaaaaaaaaaaaaaaaaaaaaaa        

                             160       170       180       190       200 
d1i5pa3  ( 143 )    plsItssVntMqqlFlnrLpqFq-iqgyqlLLLPLFAQAANMHLSFIrDV
d1w99a1  ( 143 )    rtaVitQfnlTsakLreTAvyFSnlvgyeLLLLpiYAqVAnfNLlLIrdG
d2qkga1  ( 102 )    lrdVrnrFeiLdslFtqyMpsFr-vtgyeVPLLSVYAQAANLHLLLLKDA
                      aaaaaaaaaaaaaaaa              aaaaaaaaaaaaaaaaaa

                             210       220       230       240       250 
d1i5pa3  ( 192 )    ilnadeWgIs----aatlrtYrdylrnytrdysnyCintyqtafrglntr
d1w99a1  ( 193 )    LinaqeW--slars--agdqlyntMvqytkeYiahSitwynkGldvLrnk
d2qkga1  ( 151 )    siFGeeWgfs----ttainnyynrQmsliaqYsdhCvqwyrtGldrlkgs
                    aa               aaaaaaaaaaaaaaaaaaaaaaaaaaaa     

                             260       270       280      
d1i5pa3  ( 238 )    ----lhdmlefrtYMflNVfeYvsIWslFk        
d1w99a1  ( 239 )    sngqwitfndYkreMtiqVldilalFasydPrrypadk
d2qkga1  ( 197 )    nakqwveynrFrrEMtlSVldImtlFpmYdmr      
                        aaaaaaaaaaaaaa aaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1i5pa3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1i5pa3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	delta-Endotoxin (insectocide), N-terminal domain	delta-Endotoxin (insectocide), N-terminal domain	Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339]	view
d1w99a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1w99a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	delta-Endotoxin (insectocide), N-terminal domain	delta-Endotoxin (insectocide), N-terminal domain	Bacillus thuringiensis, Cry4Ba [TaxId: 1428]	view
d2qkga1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2qkga1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Bacillus thuringiensis [TaxId: 1428]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1i5pa3	A	P0A377	GO:0001907
d1i5pa3	A	P0A377	GO:0005102
d1i5pa3	A	P0A377	GO:0030435
d1i5pa3	A	P0A377	GO:0035821
d1i5pa3	A	P0A377	GO:0090729
d1i5pa3	A	P0A377	GO:0001907
d1i5pa3	A	P0A377	GO:0005102
d1i5pa3	A	P0A377	GO:0030435
d1i5pa3	A	P0A377	GO:0035821
d1i5pa3	A	P0A377	GO:0090729
d1i5pa3	A	P0A377	GO:0001907
d1i5pa3	A	P0A377	GO:0005102
d1i5pa3	A	P0A377	GO:0030435
d1i5pa3	A	P0A377	GO:0035821
d1i5pa3	A	P0A377	GO:0090729
d1i5pa3	A	P0A377	GO:0001907
d1i5pa3	A	P0A377	GO:0005102
d1i5pa3	A	P0A377	GO:0030435
d1i5pa3	A	P0A377	GO:0035821
d1i5pa3	A	P0A377	GO:0090729

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