PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ciia1  ( 451 )             dainftteflksvsekygakAeqLAreMagqAk---gkkIr
d1cola-  (   5 )    akdereLLekTSelIagMGdkIGehlgdkYkaIAkdIAdnIknFqgktIr
                              aaaaaaaaaaaaaaaa  aaaaaaaaaaa           

                             60        70        80        90        100 
d1ciia1  ( 489 )    nveeAlkTYekyradInkkiNakdraaIAaaLesVklsdIssnlnrFsrG
d1cola-  (  55 )    sfddAmaSLnkItanpaMkinkadrdaLvnaWkhvdAqdmAnkLgnlska
                     aaaaaaaaaa a         aaaaaaaaaaa   aaaaaaaaaaa   

                             110       120       130       140       150 
d1ciia1  ( 539 )    lgyagkftsLadWIteFGkAVrtenWrpLFvkTetIIa-----gnaAtAL
d1cola-  ( 105 )    FkvadvvmkVekVrekSieGYetgnwgpLMleVesWvlsgiasSvALGIF
                             aaaaaaaaaaaaa    aaaaaaa             aaaa

                             160       170       180       190     
d1ciia1  ( 584 )    VALVFSIltgsaLg----iiGYGLLMAVTGALIdesLVekAnkfw  
d1cola-  ( 155 )    SATLGaYAlsLgvpaiAVgiAGiLLAAVVGALIddkFAdaLnneiIr
                    aaaaaaaa          aaaaaaaaaaaaaaa  aaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1ciia1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ciia1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Colicin Ia	Colicin	Escherichia coli [TaxId: 562]		view
d1cola- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1cola- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Colicin A	Colicin	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1ciia1	A	P06716	GO:0005886
d1ciia1	A	P06716	GO:0016020
d1ciia1	A	P06716	GO:0031640
d1ciia1	A	P06716	GO:0042742
d1ciia1	A	P06716	GO:0050829
d1ciia1	A	P06716	GO:0140911
d1cola_	A	Q47108	GO:0005886
d1cola_	A	Q47108	GO:0016020
d1cola_	A	Q47108	GO:0031640
d1cola_	A	Q47108	GO:0042742
d1cola_	A	Q47108	GO:0050829
d1cola_	A	Q47108	GO:0140911

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