PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1dd9a-  ( 115 )    tlyqlMdgLNtfYqqsLqqpvAtsArqyLekrglsheviarFaIGFAppg
d1nuia1  (  64 )    gty------nvwnfge-----snGrysaltargIskeTCqkAgYWiAkvd
                                                       aaaaaaa  bbb   

                             60        70        80        90        100 
d1dd9a-  ( 165 )    wdnVlkrfGgnpenrqsLidAgMLvtnrSyDrFreRVMFPIrdkrgrVIG
d1nuia1  ( 103 )    --------------------------------gvmyqVADYrdqngnivS
                                                       bbbbbbb     bbb

                             110       120       130       140       150 
d1dd9a-  ( 218 )    FGGrvlgndtpkylnSpetdiFhkgrqLYGLyEAqqdnaePnrLLvVegY
d1nuia1  ( 121 )    QkVrdk-----dknfktTg--shksdaLFGkhlw----nggkkIVVTegE
                    bbbb                                        bbb  a

                             160       170       180       190       200 
d1dd9a-  ( 268 )    mdVVaLAqygI--nyAVAsLg------sTtadHIqlLFraTnnVICCydG
d1nuia1  ( 160 )    idMLTVMelQdCkypVVSLGhgasaAkkTCaaNyeyFdq-FeqIILMFdm
                    aaaaaaaa       bb             aa aaaa      bbbb   

                             210       220       230       240       250 
d1dd9a-  ( 311 )    dragrdaAwrALetALpyMtdgrqLrFMfLpdgedPdtLVrkegkeaFea
d1nuia1  ( 209 )    deaGrkaveeAaqvLPa----g-kvrvAvLpc-kdANeChlnghdreIme
                     aaaaaaaaaaaaa          bbb        aaaaa    aaaaaa

                             260       270       280       290       300 
d1dd9a-  ( 361 )    rMeqAmpLsaFLFnsLmpqVdlstpdgrarLstlAlplIsqVpgetlriy
d1nuia1  ( 253 )    qVw                                               
                    aa                                                

                             310      
d1dd9a-  ( 411 )    LrqeLGnkLgilddsqle
d1nuia1

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1dd9a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1dd9a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	DNA primase DnaG catalytic core	DNA primase DnaG catalytic core	Escherichia coli [TaxId: 562]		view
d1nuia1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nuia1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Primase fragment of primase-helicase protein	Primase fragment of primase-helicase protein	Bacteriophage T7 [TaxId: 10760]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1dd9a_	A	P0ABS5	GO:0003896
d1dd9a_	A	P0ABS5	GO:0006269
d1dd9a_	A	P0ABS5	GO:0016779
d1nuia1	A	P03692	GO:0003697
d1nuia1	A	P03692	GO:0003896
d1nuia1	A	P03692	GO:0004386
d1nuia1	A	P03692	GO:0008270
d1nuia1	A	P03692	GO:0043139

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