Motif    Start   End  Length   Motif
Motif1    42     47     6      [FA][AG][IY][GW][FI][A]
Motif2    88     92     5      [MV][FA][PD][IY][R]
Motif3    100    104    5      [GS][FQ][GK][GV][R]
Motif4    128    131    4      [L][YF][G][LK]
Motif5    144    147    4      [LI][LV][V][VT]
Motif6    150    158    9      [YE][MI][D][VM][VL][AT][LV][AM][QE]
Motif7    166    169    4      [AV][V][AS][SL]
Motif8    183    187    5      [HN][IY][QE][LY][LF]
Motif9    194    197    4      [VI][I][CL][CM]
Motif10   211    215    5      [A][LA][EQ][TV][AL]
Motif11   226    228    3      [R][FV][MA]
Motif12   236    239    4      [PA][DN][TE][LC]
Motif13   248    252    5      [FI][EM][AE][RQ][MV]


Motif marked on the alignment

                                                   ******             
d1dd9a  : TLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGG
d1nuia  : GTY------NVWNFGE-----SNGRYSALTARGISKETCQKAGYWIAKVD----------


                                     *****       *****                
d1dd9a  : NPENRQSLIDAGMLVTNRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETD
d1nuia  : ----------------------GVMYQVADYRDQNGNIVSQKVRDK-----DKNFKTTG-


                 ****            ****  *********       ****           
d1dd9a  : IFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGI--NYAVASLG------STT
d1nuia  : -SHKSDALFGKHLW----NGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTC


            *****      ****             *****          ***       **** 
d1dd9a  : ADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLV
d1nuia  : AANYEYFDQ-FEQIILMFDMDEAGRKAVEEAAQVLPA----G-KVRVAVLPC-KDANECH


                 *****                                                
d1dd9a  : RKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIY
d1nuia  : LNGHDREIMEQVW-----------------------------------------------


                                                                      
d1dd9a  : LRQELGNKLGILDDSQLE
d1nuia  : ------------------