PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1jjcb6  ( 191 )    lk---aealpLpFaLkVedpeGApHFTLGyAfgLrVapSplwMqraLfaa
d1ni5a3  ( 315 )    gqsenivpWqtwlqple-LpaglGsVqLna--------------------
                         bb        bb       bbbbbb                    

                             60        70        80        90        100 
d1jjcb6  ( 238 )    gmrPiNNVvDVTnyVmleraQPMhAFDlrfVgeGIAVRrAregerlkTld
d1ni5a3  ( 344 )    -------------------ggdIrpPrade---aVsVrFkApg-llhIvg
                                                      bbbb      bb    

                             110       120       130       140       150 
d1jjcb6  ( 288 )    g-vertLhp-------------eDLVIAGwrgeesfpLGLAgVmgGaeSe
d1ni5a3  ( 371 )    rngGrklkkIWqelgvppwlrdtTPLLFYg----etLIAAAgvfvTqeGv
                        bb                   bbbb      bbbbb   bb     

                             160       170       180       190       200 
d1jjcb6  ( 324 )    VredTeaIALEVAcFdpvsIrkTArrhglrteaShrFergVdplgQvpAQ
d1ni5a3  ( 417 )    Ae--genGvsFvwqktl---------------------------------
                            bbbbbb                                    

                             210       220    
d1jjcb6  ( 374 )    rrALslLqalAgArVAealleagspk
d1ni5a3  ( 432 )    -------------------------s

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1jjcb6 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1jjcb6 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	B3/B4 domain of PheRS, PheT	B3/B4 domain of PheRS, PheT	Thermus thermophilus [TaxId: 274]		view
d1ni5a3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ni5a3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	tRNA-Ile-lysidine synthetase, TilS, C-terminal domain	tRNA-Ile-lysidine synthetase, TilS, C-terminal domain	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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L	K	-	-	-	A	E	A	L	P	L	P	F	A	L	K	V	E	D	P	E	G	A	P	H	F	T	L	G	Y	A	F	G	L	R	V	A	P	S	P	L	W	M	Q	R	A	L	F	A	A	G	M	R	P	I	N	N	V	V	D	V	T	N	Y	V	M	L	E	R	A	Q	P	M	H	A	F	D	L	R	F	V	G	E	G	I	A	V	R	R	A	R	E	G	E	R	L	K	T	L	D	G	-	V	E	R	T	L	H	P	-	-	-	-	-	-	-	-	-	-	-	-	-	E	D	L	V	I	A	G	W	R	G	E	E	S	F	P	L	G	L	A	G	V	M	G	G	A	E	S	E	V	R	E	D	T	E	A	I	A	L	E	V	A	C	F	D	P	V	S	I	R	K	T	A	R	R	H	G	L	R	T	E	A	S	H	R	F	E	R	G	V	D	P	L	G	Q	V	P	A	Q	R	R	A	L	S	L	L	Q	A	L	A	G	A	R	V	A	E	A	L	L	E	A	G	S	P	K
G	Q	S	E	N	I	V	P	W	Q	T	W	L	Q	P	L	E	-	L	P	A	G	L	G	S	V	Q	L	N	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	G	D	I	R	P	P	R	A	D	E	-	-	-	A	V	S	V	R	F	K	A	P	G	-	L	L	H	I	V	G	R	N	G	G	R	K	L	K	K	I	W	Q	E	L	G	V	P	P	W	L	R	D	T	T	P	L	L	F	Y	G	-	-	-	-	E	T	L	I	A	A	A	G	V	F	V	T	Q	E	G	V	A	E	-	-	G	E	N	G	V	S	F	V	W	Q	K	T	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S

Member	Chain	UniProtKB	GO term
d1jjcb6	B	Q5SGX2	GO:0000049
d1jjcb6	B	Q5SGX2	GO:0000287
d1jjcb6	B	Q5SGX2	GO:0004812
d1jjcb6	B	Q5SGX2	GO:0004826
d1jjcb6	B	Q5SGX2	GO:0005524
d1jjcb6	B	Q5SGX2	GO:0005737
d1jjcb6	B	Q5SGX2	GO:0006412
d1jjcb6	B	Q5SGX2	GO:0006432
d1jjcb6	B	Q5SGX2	GO:0046872
d1jjcb6	B	Q5SGX2	GO:0003723
d1jjcb6	B	Q5SGX2	GO:0009328
d1jjcb6	B	Q5SGX1	GO:0000049
d1jjcb6	B	Q5SGX1	GO:0000287
d1jjcb6	B	Q5SGX1	GO:0004812
d1jjcb6	B	Q5SGX1	GO:0004826
d1jjcb6	B	Q5SGX1	GO:0005524
d1jjcb6	B	Q5SGX1	GO:0005737
d1jjcb6	B	Q5SGX1	GO:0006412
d1jjcb6	B	Q5SGX1	GO:0006432
d1jjcb6	B	Q5SGX1	GO:0046872
d1jjcb6	B	Q5SGX1	GO:0003723
d1jjcb6	B	Q5SGX1	GO:0009328
d1jjcb6	B	Q5SGX2	GO:0000049
d1jjcb6	B	Q5SGX2	GO:0000287
d1jjcb6	B	Q5SGX2	GO:0004812
d1jjcb6	B	Q5SGX2	GO:0004826
d1jjcb6	B	Q5SGX2	GO:0005524
d1jjcb6	B	Q5SGX2	GO:0005737
d1jjcb6	B	Q5SGX2	GO:0006412
d1jjcb6	B	Q5SGX2	GO:0006432
d1jjcb6	B	Q5SGX2	GO:0046872
d1jjcb6	B	Q5SGX2	GO:0003723
d1jjcb6	B	Q5SGX2	GO:0009328
d1jjcb6	B	Q5SGX1	GO:0000049
d1jjcb6	B	Q5SGX1	GO:0000287
d1jjcb6	B	Q5SGX1	GO:0004812
d1jjcb6	B	Q5SGX1	GO:0004826
d1jjcb6	B	Q5SGX1	GO:0005524
d1jjcb6	B	Q5SGX1	GO:0005737
d1jjcb6	B	Q5SGX1	GO:0006412
d1jjcb6	B	Q5SGX1	GO:0006432
d1jjcb6	B	Q5SGX1	GO:0046872
d1jjcb6	B	Q5SGX1	GO:0003723
d1jjcb6	B	Q5SGX1	GO:0009328
d1jjcb6	B	Q5SGX2	GO:0000049
d1jjcb6	B	Q5SGX2	GO:0000287
d1jjcb6	B	Q5SGX2	GO:0004812
d1jjcb6	B	Q5SGX2	GO:0004826
d1jjcb6	B	Q5SGX2	GO:0005524
d1jjcb6	B	Q5SGX2	GO:0005737
d1jjcb6	B	Q5SGX2	GO:0006412
d1jjcb6	B	Q5SGX2	GO:0006432
d1jjcb6	B	Q5SGX2	GO:0046872
d1jjcb6	B	Q5SGX2	GO:0003723
d1jjcb6	B	Q5SGX2	GO:0009328
d1jjcb6	B	Q5SGX1	GO:0000049
d1jjcb6	B	Q5SGX1	GO:0000287
d1jjcb6	B	Q5SGX1	GO:0004812
d1jjcb6	B	Q5SGX1	GO:0004826
d1jjcb6	B	Q5SGX1	GO:0005524
d1jjcb6	B	Q5SGX1	GO:0005737
d1jjcb6	B	Q5SGX1	GO:0006412
d1jjcb6	B	Q5SGX1	GO:0006432
d1jjcb6	B	Q5SGX1	GO:0046872
d1jjcb6	B	Q5SGX1	GO:0003723
d1jjcb6	B	Q5SGX1	GO:0009328
d1jjcb6	B	Q5SGX2	GO:0000049
d1jjcb6	B	Q5SGX2	GO:0000287
d1jjcb6	B	Q5SGX2	GO:0004812
d1jjcb6	B	Q5SGX2	GO:0004826
d1jjcb6	B	Q5SGX2	GO:0005524
d1jjcb6	B	Q5SGX2	GO:0005737
d1jjcb6	B	Q5SGX2	GO:0006412
d1jjcb6	B	Q5SGX2	GO:0006432
d1jjcb6	B	Q5SGX2	GO:0046872
d1jjcb6	B	Q5SGX2	GO:0003723
d1jjcb6	B	Q5SGX2	GO:0009328
d1jjcb6	B	Q5SGX1	GO:0000049
d1jjcb6	B	Q5SGX1	GO:0000287
d1jjcb6	B	Q5SGX1	GO:0004812
d1jjcb6	B	Q5SGX1	GO:0004826
d1jjcb6	B	Q5SGX1	GO:0005524
d1jjcb6	B	Q5SGX1	GO:0005737
d1jjcb6	B	Q5SGX1	GO:0006412
d1jjcb6	B	Q5SGX1	GO:0006432
d1jjcb6	B	Q5SGX1	GO:0046872
d1jjcb6	B	Q5SGX1	GO:0003723
d1jjcb6	B	Q5SGX1	GO:0009328
d1jjcb6	B	Q5SGX2	GO:0000049
d1jjcb6	B	Q5SGX2	GO:0000287
d1jjcb6	B	Q5SGX2	GO:0004812
d1jjcb6	B	Q5SGX2	GO:0004826
d1jjcb6	B	Q5SGX2	GO:0005524
d1jjcb6	B	Q5SGX2	GO:0005737
d1jjcb6	B	Q5SGX2	GO:0006412
d1jjcb6	B	Q5SGX2	GO:0006432
d1jjcb6	B	Q5SGX2	GO:0046872
d1jjcb6	B	Q5SGX2	GO:0003723
d1jjcb6	B	Q5SGX2	GO:0009328
d1jjcb6	B	Q5SGX1	GO:0000049
d1jjcb6	B	Q5SGX1	GO:0000287
d1jjcb6	B	Q5SGX1	GO:0004812
d1jjcb6	B	Q5SGX1	GO:0004826
d1jjcb6	B	Q5SGX1	GO:0005524
d1jjcb6	B	Q5SGX1	GO:0005737
d1jjcb6	B	Q5SGX1	GO:0006412
d1jjcb6	B	Q5SGX1	GO:0006432
d1jjcb6	B	Q5SGX1	GO:0046872
d1jjcb6	B	Q5SGX1	GO:0003723
d1jjcb6	B	Q5SGX1	GO:0009328
d1jjcb6	B	Q5SGX2	GO:0000049
d1jjcb6	B	Q5SGX2	GO:0000287
d1jjcb6	B	Q5SGX2	GO:0004812
d1jjcb6	B	Q5SGX2	GO:0004826
d1jjcb6	B	Q5SGX2	GO:0005524
d1jjcb6	B	Q5SGX2	GO:0005737
d1jjcb6	B	Q5SGX2	GO:0006412
d1jjcb6	B	Q5SGX2	GO:0006432
d1jjcb6	B	Q5SGX2	GO:0046872
d1jjcb6	B	Q5SGX2	GO:0003723
d1jjcb6	B	Q5SGX2	GO:0009328
d1jjcb6	B	Q5SGX1	GO:0000049
d1jjcb6	B	Q5SGX1	GO:0000287
d1jjcb6	B	Q5SGX1	GO:0004812
d1jjcb6	B	Q5SGX1	GO:0004826
d1jjcb6	B	Q5SGX1	GO:0005524
d1jjcb6	B	Q5SGX1	GO:0005737
d1jjcb6	B	Q5SGX1	GO:0006412
d1jjcb6	B	Q5SGX1	GO:0006432
d1jjcb6	B	Q5SGX1	GO:0046872
d1jjcb6	B	Q5SGX1	GO:0003723
d1jjcb6	B	Q5SGX1	GO:0009328
d1jjcb6	B	Q5SGX2	GO:0000049
d1jjcb6	B	Q5SGX2	GO:0000287
d1jjcb6	B	Q5SGX2	GO:0004812
d1jjcb6	B	Q5SGX2	GO:0004826
d1jjcb6	B	Q5SGX2	GO:0005524
d1jjcb6	B	Q5SGX2	GO:0005737
d1jjcb6	B	Q5SGX2	GO:0006412
d1jjcb6	B	Q5SGX2	GO:0006432
d1jjcb6	B	Q5SGX2	GO:0046872
d1jjcb6	B	Q5SGX2	GO:0003723
d1jjcb6	B	Q5SGX2	GO:0009328
d1jjcb6	B	Q5SGX1	GO:0000049
d1jjcb6	B	Q5SGX1	GO:0000287
d1jjcb6	B	Q5SGX1	GO:0004812
d1jjcb6	B	Q5SGX1	GO:0004826
d1jjcb6	B	Q5SGX1	GO:0005524
d1jjcb6	B	Q5SGX1	GO:0005737
d1jjcb6	B	Q5SGX1	GO:0006412
d1jjcb6	B	Q5SGX1	GO:0006432
d1jjcb6	B	Q5SGX1	GO:0046872
d1jjcb6	B	Q5SGX1	GO:0003723
d1jjcb6	B	Q5SGX1	GO:0009328
d1ni5a3	A	P52097	GO:0000166
d1ni5a3	A	P52097	GO:0002136
d1ni5a3	A	P52097	GO:0005524
d1ni5a3	A	P52097	GO:0005737
d1ni5a3	A	P52097	GO:0005829
d1ni5a3	A	P52097	GO:0006400
d1ni5a3	A	P52097	GO:0008033
d1ni5a3	A	P52097	GO:0016874
d1ni5a3	A	P52097	GO:0016879
d1ni5a3	A	P52097	GO:0032267
d1ni5a3	A	P52097	GO:0042802
d1ni5a3	A	P52097	GO:0000166
d1ni5a3	A	P52097	GO:0002136
d1ni5a3	A	P52097	GO:0005524
d1ni5a3	A	P52097	GO:0005737
d1ni5a3	A	P52097	GO:0005829
d1ni5a3	A	P52097	GO:0006400
d1ni5a3	A	P52097	GO:0008033
d1ni5a3	A	P52097	GO:0016874
d1ni5a3	A	P52097	GO:0016879
d1ni5a3	A	P52097	GO:0032267
d1ni5a3	A	P52097	GO:0042802

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G	Q	S	E	N	I	V	P	W	Q	T	W	L	Q	P	L	E	-	L	P	A	G	L	G	S	V	Q	L	N	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	G	D	I	R	P	P	R	A	D	E	-	-	-	A	V	S	V	R	F	K	A	P	G	-	L	L	H	I	V	G	R	N	G	G	R	K	L	K	K	I	W	Q	E	L	G	V	P	P	W	L	R	D	T	T	P	L	L	F	Y	G	-	-	-	-	E	T	L	I	A	A	A	G	V	F	V	T	Q	E	G	V	A	E	-	-	G	E	N	G	V	S	F	V	W	Q	K	T	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S

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