Superfamily : 55846 [ N-acetylmuramoyl-L-alanine amidase-like ]
Class : Alpha and beta proteins (a+b)
Fold : N-acetylmuramoyl-L-alanine amidase-like
# of Members : 14
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1lbaa-  (   1 )                                       akqRes-TdAIFVHC
d1ohta-  (  12 )                  tarllsrsdwgArlpk---s-vehfqgpApyVIIHH
d1yb0a1  (   1 )                   meirkkl----VvpskygtKCp-ytMkPkyITVHN
d2f2la2  ( 355 )                     fVerqqWlAqppq---keipdLelpVglVIALP
d2rkqa1  (  11 )                  eVpivtraeWnAkppn---gaIdsMvtpLprAVIAH
d2wkxa2  (   5 )    e--------------kgivekegyqldtrrqaq----aayprikvLVIHy
d2xz4a-  (  58 )                    hildrseWlGepps----gyphL-lpVsnIIIHH
d2y28a-  (   2 )    lldegwlaeArrvpSphydcRpdd----------------enPsLLVVHn
d3ep1a-  (  75 )                  adsivprqqWaAiepr----rqikMg-rAdeIFLwq
d3hmaa-  (   5 )                   vniiqdf----Ipvga--nNrpgyaMtplyITVHN
d3mu9a-  (   1 )             edppaçgsivprreWrAlase----ÇrerLtrpVryVVVSH
d5xz3a1  (   4 )               denCseiikrneWtnvqAk----ninyLiipIpyVIIHH
d6srta1  (  22 )                   pkiveV-------nYtwatplsynFn-pnMIVYHH
d6su5a-  (   2 )                    rilepw----nrwYrqkgvyrirgtpPhyIVLHH
                                                                bbbbbb

                             60        70        80        90        100 
d1lbaa-  (  19 )    satkp-sqnvgvreIrqwhke-q-----------gwldVGyHfIIkrd--
d1ohta-  (  44 )    sypavÇystpdÇk--srd-QdfhQl-------ergwnDiGySFgIGgd--
d1yb0a1  (  31 )    Tynd-----apAeneVnyMitn------------nne-vSfHVAVDdk--
d2f2la2  ( 385 )    TnsenÇstqaiÇvlrVrllQtydIe-------ssq-kDIayNFLIGgd--
d2rkqa1  (  43 )    taggaÇaddvtÇsqhMrnlQnfQms-------kqkfsDIGyHyLIGgn--
d2wkxa2  (  37 )    Tadd-------fdsSlatLtdk---------------qvsSHyLVpavPp
d2xz4a-  (  89 )    TategÇeqedvÇiyrMktiQafhmk-------sfgwvDIGyNFLVGgd--
d2y28a-  (  36 )    iSLpp-ge-fggpwIdaLFtgtIdpnahpyFagiahlrvSAHCLIrrd--
d3ep1a-  ( 107 )    tgptcsggçsçteqiVkalQdaDfk--------egndDIkyNFLIdqd--
d3hmaa-  (  34 )    Tant--avgadAaahAryLknp------------dtt-tSwHFTVDdt--
d3mu9a-  (  38 )    TagshçdtpasÇaqqAqnvQsyhvr-------nlgwçDVGyNFLIGED--
d5xz3a1  (  39 )    TvsleÇnskdtÇisnIeniRsyhMd-------tlnwhDIGySFLIGgd--
d6srta1  (  49 )    Tvdn----nmtPqkIdeihkq-r-----------gwSGIGyHFYIrkd--
d6su5a-  (  32 )    Tagpv---dqapevIrdfHekgr-----------gwpHIGyHYLVYqd--
                               aaaaaaaaaa                     bbb     

                             110       120       130       140       150 
d1lbaa-  (  54 )    -----gtveaGrdemavGsHAk--------gynhnSIGVCLVGGidd---
d1ohta-  (  86 )    -----g-IytgrgfnviGahAp--------kyndkSVGIVLiG-dWrt--
d1yb0a1  (  61 )    ------qAIQGIpwerNAwaCgdgng----pGNreSISVeICy--Sk---
d2f2la2  ( 426 )    -----gnVYvGrgwnkmGaHMnni------nyDsqSLSFAYIG-sFkt--
d2rkqa1  (  84 )    -----GkVYeGRspsqrGaFAg--------pnndgSLGIAFIG-nfee--
d2wkxa2  (  65 )    ryngkpriwqlvpeqelAwHAgiSawrgatrLndtSIGIeLenrGwqksa
d2xz4a-  ( 130 )    -----gqIYvGRgwhiqGqhvgy-------g--aiSVSIAFIG-tFvn--
d2y28a-  (  82 )    -----GeiVQYVPFdkrAwHAgvSsyqgrerCndFSIGIeLEGtdt----
d3ep1a-  ( 161 )    -----gvIYeGRgwgvvGqHtg---------rdshSIGVAVIg-dFg---
d3hmaa-  (  67 )    ------eIyqHLplneNGwhAgdgng----sGNraSIGIeICE--Na---
d3mu9a-  (  79 )    -----glVYeGRgwnikGaHAgp-------twnpiSIGISFMG-nYmn--
d5xz3a1  (  80 )    -----gnIYeGCGwnheGaHTy--------gynkkSISIAFIG-nFqn--
d6srta1  (  81 )    -----gtIyrGRpenAvGsHAp--------gvnarAFGIASEG-nFn---
d6su5a-  (  66 )    -----grVykTLpnnAiPiçVr--------efnpvSLÇIAAVG-dFs---
                           bbb                         bbbbbb         

                             160       170       180       190       200 
d1lbaa-  (  88 )    kgkfdAnFtp--aQmqsLrslLvtLlakye---gA-----vlrAhHevap
d1ohta-  ( 120 )    -----elPp--k-qldAAknLIafGvfk-----gyIdpaykLLGhrqVr-
d1yb0a1  (  96 )    sGg-----drYykAEnnAvdVVrqLmsmynIpien------Vrthqswsg
d2f2la2  ( 462 )    -----iqPs--akQlsvTrlLLerGvkl-----gkIapsyrFTaSsklm-
d2rkqa1  ( 118 )    -----raPn--keAldAAkeLLeqAvkq-----aqLvegykLLGhrQVs-
d2wkxa2  ( 115 )    gvkyfApFe--paQIqALiplAkdIiaryhIkpen------VVaHadIap
d2xz4a-  ( 164 )    -----mePp--arQi-AAkrLMdeGvrl-----hrLqpdyhIyAHrqls-
d2y28a-  ( 123 )    -----laYt--daQYqqLAaVTnaLitrypaIann-------tGHcnIap
d3ep1a-  ( 195 )    -----kePs--qaLqdALskLiicGqaa-----eeLssgArlrTt-----
d3hmaa-  ( 102 )    dG-------dfakAtanAqwLIktLmaehnIslan------Vvphkywsg
d3mu9a-  ( 114 )    -----rvPp--prAlraAqnLLaÇGval-----gALrsnyeVkGhrdVq-
d5xz3a1  ( 114 )    -----ksAs--nkMlnaAhkLIlCGksk-----giLredVrVIGGkqvi-
d6srta1  ( 114 )    ee----yvtp--qQmtsLiaLSryLMnkyn---It-----dLkrhkdvrq
d6su5a-  (  99 )    q---gpaWpdnApGWkaLleLkdaLvkayp---kA-----vlvlhkeltq
                                aaaaaaaaaaaaaaa             bbbb      

                             210       220       230 
d1lbaa-  ( 128 )    --kacPS--F---dLkrWwek-nelv--tsdrg
d1ohta-  ( 157 )    -dtecP-G---grLfaeIssWphfthindtegv
d1yb0a1  ( 135 )    --kycPhrMlaegrwgaFiqkVksg        
d2f2la2  ( 499 )    psvtdfkA---daLyasFanwthws        
d2rkqa1  ( 155 )    -atkSP-G---eaLyalIqqWpnwseem     
d2wkxa2  ( 157 )    qrkddPgplF---pwqqLaqqgIGaw       
d2xz4a-  ( 201 )    -ptesP-G---q-LfelMqnwprft        
d2y28a-  ( 160 )    erktdPgpsF---dwarFralvtp         
d3ep1a-  ( 228 )    --pamS-G---qaFydMldrçglç         
d3hmaa-  ( 139 )    --kecPrklld--twdsFkagIg          
d3mu9a-  ( 151 )    -ptlsP-G---drLyeiIqtwshyra       
d5xz3a1  ( 151 )    -atlsP-G---feLykqIqnwpewvstp     
d6srta1  ( 150 )    --tecPGnnF---pfeeIkakLnvk        
d6su5a-  ( 138 )    --ttcPg-vL---swgmVaekGgk         
                                  aaaa
 

 

Domain IDNameFamilySourceDomainSTRING-DB
Bacteriophage T7 lysozyme (Zn amidase)N-acetylmuramoyl-L-alanine amidase-likeBacteriophage T7 [TaxId: 10760]view
Peptidoglycan recognition protein-lb (Cg14704)N-acetylmuramoyl-L-alanine amidase-likeFruit fly (Drosophila melanogaster) [TaxId: 7227]view
N-acetylmuramoyl-L-alanine amidase PlyGN-acetylmuramoyl-L-alanine amidase-likeAnthrax bacillus (Bacillus anthracis) [TaxId: 1392]view
automated matchesautomated matchesFruit fly (Drosophila melanogaster) [TaxId: 7227]view
automated matchesautomated matchesFruit fly (Drosophila melanogaster) [TaxId: 7227]view
Probable N-acetylmuramoyl-L-alanine amidase YbjR, N-terminal domainN-acetylmuramoyl-L-alanine amidase-likeEscherichia coli [TaxId: 562]view
automated matchesautomated matchesFruit fly (Drosophila melanogaster) [TaxId: 7227]view
AmpD proteinN-acetylmuramoyl-L-alanine amidase-likeCitrobacter freundii [TaxId: 546]view
automated matchesautomated matchesAlvinella pompejana [TaxId: 6376]view
automated matchesautomated matchesBacillus subtilis [TaxId: 1423]view
automated matchesN-acetylmuramoyl-L-alanine amidase-likeCamel (Camelus dromedarius) [TaxId: 9838]view
automated matchesautomated matchesHoneybee (Apis mellifera) [TaxId: 7460]view
automated matchesautomated matchesClostridium intestinale [TaxId: 1294142]view
automated matchesautomated matchesThermus phage [TaxId: 1442384]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - A K Q R E S - T D A I F V H C S A T K P - S Q N V G V R E I R Q W H K E - Q - - - - - - - - - - - G W L D V G Y H F I I K R D - - - - - - - G T V E A G R D E M A V G S H A K - - - - - - - - G Y N H N S I G V C L V G G I D D - - - K G K F D A N F T P - - A Q M Q S L R S L L V T L L A K Y E - - - G A - - - - - V L R A H H E V A P - - K A C P S - - F - - - D L K R W W E K - N E L V - - T S D R G
- - - - - - - - - - - - - - T A R L L S R S D W G A R L P K - - - S - V E H F Q G P A P Y V I I H H S Y P A V C Y S T P D C K - - S R D - Q D F H Q L - - - - - - - E R G W N D I G Y S F G I G G D - - - - - - - G - I Y T G R G F N V I G A H A P - - - - - - - - K Y N D K S V G I V L I G - D W R T - - - - - - - E L P P - - K - Q L D A A K N L I A F G V F K - - - - - G Y I D P A Y K L L G H R Q V R - - D T E C P - G - - - G R L F A E I S S W P H F T H I N D T E G V
- - - - - - - - - - - - - - - M E I R K K L - - - - V V P S K Y G T K C P - Y T M K P K Y I T V H N T Y N D - - - - - A P A E N E V N Y M I T N - - - - - - - - - - - - N N E - V S F H V A V D D K - - - - - - - - Q A I Q G I P W E R N A W A C G D G N G - - - - P G N R E S I S V E I C Y - - S K - - - S G G - - - - - D R Y Y K A E N N A V D V V R Q L M S M Y N I P I E N - - - - - - V R T H Q S W S G - - K Y C P H R M L A E G R W G A F I Q K V K S G - - - - - - - -
- - - - - - - - - - - - - - - - - F V E R Q Q W L A Q P P Q - - - K E I P D L E L P V G L V I A L P T N S E N C S T Q A I C V L R V R L L Q T Y D I E - - - - - - - S S Q - K D I A Y N F L I G G D - - - - - - - G N V Y V G R G W N K M G A H M N N I - - - - - - N Y D S Q S L S F A Y I G - S F K T - - - - - - - I Q P S - - A K Q L S V T R L L L E R G V K L - - - - - G K I A P S Y R F T A S S K L M - P S V T D F K A - - - D A L Y A S F A N W T H W S - - - - - - - -
- - - - - - - - - - - - - - E V P I V T R A E W N A K P P N - - - G A I D S M V T P L P R A V I A H T A G G A C A D D V T C S Q H M R N L Q N F Q M S - - - - - - - K Q K F S D I G Y H Y L I G G N - - - - - - - G K V Y E G R S P S Q R G A F A G - - - - - - - - P N N D G S L G I A F I G - N F E E - - - - - - - R A P N - - K E A L D A A K E L L E Q A V K Q - - - - - A Q L V E G Y K L L G H R Q V S - - A T K S P - G - - - E A L Y A L I Q Q W P N W S E E M - - - - -
E - - - - - - - - - - - - - - K G I V E K E G Y Q L D T R R Q A Q - - - - A A Y P R I K V L V I H Y T A D D - - - - - - - F D S S L A T L T D K - - - - - - - - - - - - - - - Q V S S H Y L V P A V P P R Y N G K P R I W Q L V P E Q E L A W H A G I S A W R G A T R L N D T S I G I E L E N R G W Q K S A G V K Y F A P F E - - P A Q I Q A L I P L A K D I I A R Y H I K P E N - - - - - - V V A H A D I A P Q R K D D P G P L F - - - P W Q Q L A Q Q G I G A W - - - - - - -
- - - - - - - - - - - - - - - - H I L D R S E W L G E P P S - - - - G Y P H L - L P V S N I I I H H T A T E G C E Q E D V C I Y R M K T I Q A F H M K - - - - - - - S F G W V D I G Y N F L V G G D - - - - - - - G Q I Y V G R G W H I Q G Q H V G Y - - - - - - - G - - A I S V S I A F I G - T F V N - - - - - - - M E P P - - A R Q I - A A K R L M D E G V R L - - - - - H R L Q P D Y H I Y A H R Q L S - - P T E S P - G - - - Q - L F E L M Q N W P R F T - - - - - - - -
L L D E G W L A E A R R V P S P H Y D C R P D D - - - - - - - - - - - - - - - - E N P S L L V V H N I S L P P - G E - F G G P W I D A L F T G T I D P N A H P Y F A G I A H L R V S A H C L I R R D - - - - - - - G E I V Q Y V P F D K R A W H A G V S S Y Q G R E R C N D F S I G I E L E G T D T - - - - - - - - - L A Y T - - D A Q Y Q Q L A A V T N A L I T R Y P A I A N N - - - - - - - T G H C N I A P E R K T D P G P S F - - - D W A R F R A L V T P - - - - - - - - -
- - - - - - - - - - - - - - A D S I V P R Q Q W A A I E P R - - - - R Q I K M G - R A D E I F L W Q T G P T C S G G C S C T E Q I V K A L Q D A D F K - - - - - - - - E G N D D I K Y N F L I D Q D - - - - - - - G V I Y E G R G W G V V G Q H T G - - - - - - - - - R D S H S I G V A V I G - D F G - - - - - - - - K E P S - - Q A L Q D A L S K L I I C G Q A A - - - - - E E L S S G A R L R T T - - - - - - - P A M S - G - - - Q A F Y D M L D R C G L C - - - - - - - - -
- - - - - - - - - - - - - - - V N I I Q D F - - - - I P V G A - - N N R P G Y A M T P L Y I T V H N T A N T - - A V G A D A A A H A R Y L K N P - - - - - - - - - - - - D T T - T S W H F T V D D T - - - - - - - - E I Y Q H L P L N E N G W H A G D G N G - - - - S G N R A S I G I E I C E - - N A - - - D G - - - - - - - D F A K A T A N A Q W L I K T L M A E H N I S L A N - - - - - - V V P H K Y W S G - - K E C P R K L L D - - T W D S F K A G I G - - - - - - - - - -
- - - - - - - - - E D P P A C G S I V P R R E W R A L A S E - - - - C R E R L T R P V R Y V V V S H T A G S H C D T P A S C A Q Q A Q N V Q S Y H V R - - - - - - - N L G W C D V G Y N F L I G E D - - - - - - - G L V Y E G R G W N I K G A H A G P - - - - - - - T W N P I S I G I S F M G - N Y M N - - - - - - - R V P P - - P R A L R A A Q N L L A C G V A L - - - - - G A L R S N Y E V K G H R D V Q - - P T L S P - G - - - D R L Y E I I Q T W S H Y R A - - - - - - -
- - - - - - - - - - - D E N C S E I I K R N E W T N V Q A K - - - - N I N Y L I I P I P Y V I I H H T V S L E C N S K D T C I S N I E N I R S Y H M D - - - - - - - T L N W H D I G Y S F L I G G D - - - - - - - G N I Y E G C G W N H E G A H T Y - - - - - - - - G Y N K K S I S I A F I G - N F Q N - - - - - - - K S A S - - N K M L N A A H K L I L C G K S K - - - - - G I L R E D V R V I G G K Q V I - - A T L S P - G - - - F E L Y K Q I Q N W P E W V S T P - - - - -
- - - - - - - - - - - - - - - P K I V E V - - - - - - - N Y T W A T P L S Y N F N - P N M I V Y H H T V D N - - - - N M T P Q K I D E I H K Q - R - - - - - - - - - - - G W S G I G Y H F Y I R K D - - - - - - - G T I Y R G R P E N A V G S H A P - - - - - - - - G V N A R A F G I A S E G - N F N - - - E E - - - - Y V T P - - Q Q M T S L I A L S R Y L M N K Y N - - - I T - - - - - D L K R H K D V R Q - - T E C P G N N F - - - P F E E I K A K L N V K - - - - - - - -
- - - - - - - - - - - - - - - - R I L E P W - - - - N R W Y R Q K G V Y R I R G T P P H Y I V L H H T A G P V - - - D Q A P E V I R D F H E K G R - - - - - - - - - - - G W P H I G Y H Y L V Y Q D - - - - - - - G R V Y K T L P N N A I P I C V R - - - - - - - - E F N P V S L C I A A V G - D F S - - - Q - - - G P A W P D N A P G W K A L L E L K D A L V K A Y P - - - K A - - - - - V L V L H K E L T Q - - T T C P G - V L - - - S W G M V A E K G G K - - - - - - - - -

 

 

 

 

 

Member Chain UniProtKB GO term
d1lbaa_ A P00806 GO:0008270
d1lbaa_ A P00806 GO:0008745
d1lbaa_ A P00806 GO:0009253
d1lbaa_ A P00806 GO:0016787
d1lbaa_ A P00806 GO:0030430
d1lbaa_ A P00806 GO:0031640
d1lbaa_ A P00806 GO:0032897
d1lbaa_ A P00806 GO:0042742
d1lbaa_ A P00806 GO:0044659
d1lbaa_ A P00806 GO:0046872
d1ohta_ A Q8INK6 GO:0002814
d1ohta_ A Q8INK6 GO:0005515
d1ohta_ A Q8INK6 GO:0005576
d1ohta_ A Q8INK6 GO:0008270
d1ohta_ A Q8INK6 GO:0008745
d1ohta_ A Q8INK6 GO:0009253
d1ohta_ A Q8INK6 GO:0016787
d1ohta_ A Q8INK6 GO:0042834
d1ohta_ A Q8INK6 GO:0045087
d1ohta_ A Q8INK6 GO:0046872
d1ohta_ A Q8INK6 GO:0050830
d1ohta_ A Q8INK6 GO:0061060
d1yb0a1 A A0A6H3AMF3 GO:0008745
d1yb0a1 A A0A6H3AMF3 GO:0009253
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in