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solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1a79a2  (   9 )            kitGlLdgdrViVfdknGiskLsarhyGnvegnfLsLsLveA
d1r0va3  ( 140 )    geqkeeLpeIagvLsdeyViTk---qteIfsryfygsekgdlVtLsLieS
d1r11a3  (   3 )                  ggdfavvkak---ksLerrgfGvkrgdkIyLhPleV
                                      bbb      aaaa     bb    bbb aaaa

                             60        70        80  
d1a79a2  (  51 )    lyLinlgwLeVkykdnkplsfeeLyeyarnve 
d1r0va3  ( 187 )    lyLldlgkLnLl-----nadreeLvkrarever
d1r11a3  (  36 )    vyLqikgiesfg-------eledvlswaesrm 
                    aaaaa               aaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1a79a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1a79a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tetrameric tRNA splicing endonuclease, N-terminal domain	tRNA-intron endonuclease N-terminal domain-like	Methanococcus jannaschii [TaxId: 2190]	view
d1r0va3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1r0va3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Dimeric tRNA splicing endonuclease, domains 1 and 3	tRNA-intron endonuclease N-terminal domain-like	Archaeoglobus fulgidus [TaxId: 2234]	view
d1r11a3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1r11a3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Dimeric tRNA splicing endonuclease, domains 1 and 3	tRNA-intron endonuclease N-terminal domain-like	Archaeoglobus fulgidus [TaxId: 2234]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Show entries

Search:

Member	Chain	UniProtKB	GO term
d1a79a2	A	Q58819	GO:0000213
d1a79a2	A	Q58819	GO:0000379
d1a79a2	A	Q58819	GO:0003676
d1a79a2	A	Q58819	GO:0006388
d1a79a2	A	Q58819	GO:0008033
d1a79a2	A	Q58819	GO:0016829
d1a79a2	A	Q58819	GO:0000213
d1a79a2	A	Q58819	GO:0000379
d1a79a2	A	Q58819	GO:0003676
d1a79a2	A	Q58819	GO:0006388

Showing 1 to 10 of 36 entries

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