Motif    Start   End  Length   Motif
Motif1    19     21     3      [VA][IV][VT]
Motif2    43     53     11     [LVI][STY][L][SH][LP][VIL][E][ASV][LV][Y][L]


Motif marked on the alignment

                            ***                     ***********       
d1a79a  : --------KITGLLDGDRVIVFDKNGISKLSARHYGNVEGNFLSLSLVEALYLINLGWLE
d1r0va  : GEQKEELPEIAGVLSDEYVITK---QTEIFSRYFYGSEKGDLVTLSLIESLYLLDLGKLN
d1r11a  : --------------GGDFAVVKAK---KSLERRGFGVKRGDKIYLHPLEVVYLQIKGIES


                                                                      
d1a79a  : VKYKDNKPLSFEELYEYARNVE-
d1r0va  : LL-----NADREELVKRAREVER
d1r11a  : FG-------ELEDVLSWAESRM-