PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1dd5a-  (   2 )     vnpfikeAkekMkrtlekIedeLrkMRTGkPspaILeeikVdyygvptp
d1ek8a-  (   1 )    misdirkdAevrMdkcVeaFktqIskirtgrAspslLdgIvVeyygtptp
d1wiha1  (   8 )                                        ldhitvvtadgkva
d1wqga-  (   2 )     idealfdAeekMekavavArddLstIRTGrAnpgMFsritidyygaatp
                       aaaaaaaaaaaaaaaaaaaaaa               bbbb  bbbb

                             60        70        80        90        100 
d1dd5a-  (  51 )    VnqLAtIsiseerTLvIkPw-dksVLslIekaInasdlgLnPindgnvIr
d1ek8a-  (  51 )    LrqlAsVtvedsrtLkInVf-drsmspaVekaImasdlgLnPnsagsdIr
d1wiha1  (  22 )    lnqigqismkspqvilvnMasfpectaaAikairesgmnlnPevegtlir
d1wqga-  (  51 )    ItqlAsInvpearlVVIkPy-eanqlraIetaIrnsdLgVnPtndgalIr
                    333 bbbbb    bbbbbb      aaaaaaaaaa       bb    bb

                             110       120       130       140       150 
d1dd5a-  ( 100 )    LvFpsPtteqrekWvkkAkeiVeeGkiaIrnirreIlkkIkedqkeglip
d1ek8a-  ( 100 )    VpLpplteerrkdLtkiVrgeAeqArvaVrnvrrdAndkVkallkdkeis
d1wiha1  (  72 )    vpipkvt                                           
d1wqga-  ( 100 )    VaVpqlteerrreLVkqAkhkGeeakvsVrnirrkaMeeLhrirkegeag
                    bb     aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa     

                             160       170       180    
d1dd5a-  ( 150 )    eddAkrLeneIqkLTdefiekLdevfeikkeeImef
d1ek8a-  ( 150 )    edddrrsqddVqklTdaaikkIeaaladkeaeLmq 
d1wiha1                                                 
d1wqga-  ( 150 )    edeVgraekdLdktthqyvtqIdelvkhkegeLlev
                    aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1dd5a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1dd5a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosome recycling factor, RRF	Ribosome recycling factor, RRF	Thermotoga maritima [TaxId: 2336]	view
d1ek8a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ek8a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosome recycling factor, RRF	Ribosome recycling factor, RRF	Escherichia coli [TaxId: 562]	view
d1wiha1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wiha1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosome recycling factor, RRF	Ribosome recycling factor, RRF	Mouse (Mus musculus), mitochondrial [TaxId: 10090]	view
d1wqga- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wqga- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Ribosome recycling factor, RRF	Mycobacterium tuberculosis [TaxId: 1773]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1dd5a_	A	Q9X1B9	GO:0005737
d1dd5a_	A	Q9X1B9	GO:0006412
d1dd5a_	A	Q9X1B9	GO:0006415
d1dd5a_	A	Q9X1B9	GO:0043023
d1ek8a_	A	P0A805	GO:0002184
d1ek8a_	A	P0A805	GO:0005515
d1ek8a_	A	P0A805	GO:0005737
d1ek8a_	A	P0A805	GO:0005829
d1ek8a_	A	P0A805	GO:0006412
d1ek8a_	A	P0A805	GO:0006415
d1ek8a_	A	P0A805	GO:0043023

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