PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1mlaa2  ( 128 )    gtgamaaIiglddasIakACeeAaegqvVspvnfnspgqVvIaghkeAVe
d1nm2a2  ( 134 )     etgmSaLlggdpevSvahLerl----gLtpanvngagqIvAagtmeqLa
d2hg4a5  ( 678 )       ggAsF-glgteqAaerigrfa-g-aLsiasvngprsVvVagesgpLd
                        bbbb    aaaaaaaa         bbbbbbb  bbbbbb   aaa

                             60        70  
d1mlaa2  ( 178 )    rAgaaCkaagAkralplpvs
d1nm2a2  ( 179 )    aLnedkPe-gVrkVvplk  
d2hg4a5  ( 723 )    eLiaeCeaeah-kArripvd
                    aaaa         bb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1mlaa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1mlaa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Probable ACP-binding domain of malonyl-CoA ACP transacylase	Probable ACP-binding domain of malonyl-CoA ACP transacylase	Escherichia coli [TaxId: 562]	view
d1nm2a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nm2a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Probable ACP-binding domain of malonyl-CoA ACP transacylase	Probable ACP-binding domain of malonyl-CoA ACP transacylase	Streptomyces coelicolor A3(2) [TaxId: 100226]	view
d2hg4a5 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2hg4a5 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ferredoxin-like domain from acyl transferase (AT) domain of 6-deoxyerythronolide B synthase (DEBS)	Probable ACP-binding domain of malonyl-CoA ACP transacylase	Saccharopolyspora erythraea [TaxId: 1836]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70
G	T	G	A	M	A	A	I	I	G	L	D	D	A	S	I	A	K	A	C	E	E	A	A	E	G	Q	V	V	S	P	V	N	F	N	S	P	G	Q	V	V	I	A	G	H	K	E	A	V	E	R	A	G	A	A	C	K	A	A	G	A	K	R	A	L	P	L	P	V	S
-	E	T	G	M	S	A	L	L	G	G	D	P	E	V	S	V	A	H	L	E	R	L	-	-	-	-	G	L	T	P	A	N	V	N	G	A	G	Q	I	V	A	A	G	T	M	E	Q	L	A	A	L	N	E	D	K	P	E	-	G	V	R	K	V	V	P	L	K	-	-
-	-	-	G	G	A	S	F	-	G	L	G	T	E	Q	A	A	E	R	I	G	R	F	A	-	G	-	A	L	S	I	A	S	V	N	G	P	R	S	V	V	V	A	G	E	S	G	P	L	D	E	L	I	A	E	C	E	A	E	A	H	-	K	A	R	R	I	P	V	D

Member	Chain	UniProtKB	GO term
d1mlaa2	A	P0AAI9	GO:0004314
d1mlaa2	A	P0AAI9	GO:0005829
d1mlaa2	A	P0AAI9	GO:0006633
d1mlaa2	A	P0AAI9	GO:0016740
d1mlaa2	A	P0AAI9	GO:0016746
d1nm2a2	A	P72391	GO:0004314
d1nm2a2	A	P72391	GO:0005829
d1nm2a2	A	P72391	GO:0006633
d1nm2a2	A	P72391	GO:0016740
d1nm2a2	A	P72391	GO:0016746

									10										20										30										40										50										60										70
G	T	G	A	M	A	A	I	I	G	L	D	D	A	S	I	A	K	A	C	E	E	A	A	E	G	Q	V	V	S	P	V	N	F	N	S	P	G	Q	V	V	I	A	G	H	K	E	A	V	E	R	A	G	A	A	C	K	A	A	G	A	K	R	A	L	P	L	P	V	S
-	E	T	G	M	S	A	L	L	G	G	D	P	E	V	S	V	A	H	L	E	R	L	-	-	-	-	G	L	T	P	A	N	V	N	G	A	G	Q	I	V	A	A	G	T	M	E	Q	L	A	A	L	N	E	D	K	P	E	-	G	V	R	K	V	V	P	L	K	-	-
-	-	-	G	G	A	S	F	-	G	L	G	T	E	Q	A	A	E	R	I	G	R	F	A	-	G	-	A	L	S	I	A	S	V	N	G	P	R	S	V	V	V	A	G	E	S	G	P	L	D	E	L	I	A	E	C	E	A	E	A	H	-	K	A	R	R	I	P	V	D

									10										20										30										40										50										60										70
G	T	G	A	M	A	A	I	I	G	L	D	D	A	S	I	A	K	A	C	E	E	A	A	E	G	Q	V	V	S	P	V	N	F	N	S	P	G	Q	V	V	I	A	G	H	K	E	A	V	E	R	A	G	A	A	C	K	A	A	G	A	K	R	A	L	P	L	P	V	S
-	E	T	G	M	S	A	L	L	G	G	D	P	E	V	S	V	A	H	L	E	R	L	-	-	-	-	G	L	T	P	A	N	V	N	G	A	G	Q	I	V	A	A	G	T	M	E	Q	L	A	A	L	N	E	D	K	P	E	-	G	V	R	K	V	V	P	L	K	-	-
-	-	-	G	G	A	S	F	-	G	L	G	T	E	Q	A	A	E	R	I	G	R	F	A	-	G	-	A	L	S	I	A	S	V	N	G	P	R	S	V	V	V	A	G	E	S	G	P	L	D	E	L	I	A	E	C	E	A	E	A	H	-	K	A	R	R	I	P	V	D

									10										20										30										40										50										60										70
G	T	G	A	M	A	A	I	I	G	L	D	D	A	S	I	A	K	A	C	E	E	A	A	E	G	Q	V	V	S	P	V	N	F	N	S	P	G	Q	V	V	I	A	G	H	K	E	A	V	E	R	A	G	A	A	C	K	A	A	G	A	K	R	A	L	P	L	P	V	S
-	E	T	G	M	S	A	L	L	G	G	D	P	E	V	S	V	A	H	L	E	R	L	-	-	-	-	G	L	T	P	A	N	V	N	G	A	G	Q	I	V	A	A	G	T	M	E	Q	L	A	A	L	N	E	D	K	P	E	-	G	V	R	K	V	V	P	L	K	-	-
-	-	-	G	G	A	S	F	-	G	L	G	T	E	Q	A	A	E	R	I	G	R	F	A	-	G	-	A	L	S	I	A	S	V	N	G	P	R	S	V	V	V	A	G	E	S	G	P	L	D	E	L	I	A	E	C	E	A	E	A	H	-	K	A	R	R	I	P	V	D