Motif    Start   End  Length   Motif
Motif1    6      8      3      [AS][AS][ILF]
Motif2    40     42     3      [VI][V][IAV]
Motif3    49     52     4      [VL][EAD][RAE][AL]


Motif marked on the alignment

               ***                               ***      ****        
d1mlaa  : GTGAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACKAAG
d1nm2a  : -ETGMSALLGGDPEVSVAHLERL----GLTPANVNGAGQIVAAGTMEQLAALNEDKPE-G
d2hg4a  : ---GGASF-GLGTEQAAERIGRFA-G-ALSIASVNGPRSVVVAGESGPLDELIAECEAEA


                                                                      
d1mlaa  : AKRALPLPVS
d1nm2a  : VRKVVPLK--
d2hg4a  : H-KARRIPVD