BASE   PART 1   PART 2   PART 3  
Superfamily : 54160 [ Chromo domain-like ]
Class : All beta proteins
Fold : SH3-like barrel
# of Members : 21
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1e0ba-  ( 262 )       qvenydswed-----------------lVss---Idtierkd-----
d1g6za1  (   2 )             spkqee--------------yever---ivdeklDr-----
d1pfba-  (  23 )             dlvy-----------------aaek---Iiqkrvkk-----
d2buda1  ( 367 )    dplmqkidisenpdkiYfirre----dGtvhrGq---vlqsr--tte---
d2dy7a1  ( 172 )                            qpedfhgidi---vinhrlktsl---
d2dy8a1  ( 279 )             defeef--------------hvPer---iidsqrasle---
d2fmma-  ( 108 )       ek---prgfarg--------------leper---Iigatdss-----
d2huga2  (   3 )                               qvfeyaevdeivek-----r---
d2m2la1  (   8 )              evpqt--------------fever---ivrkkivh-----
d2xiwa-  (   2 )                 vkV------kFllngeekevdtskIrdvsrq------
d3m9qa-  (   4 )    lrdetplFh---kgeiVLCyepdkskarvLytSk---Vlnvferrne---
d3svma-  (  57 )             d-vf-----------------evek---Ildmkteg-----
d5afwa1  ( 270 )                               efetIer---FmdcriGrkgAtg
d5afwa2  ( 374 )    yncqqeltddlhkqy--------------qiVer---Iiahsnqksa---
d5in1a-  (  10 )          sfk---egerVLAyhg-----plLyeAk---Vqksenk------
                                                   bbb   bbbbbb       

                             60        70        80        90        100 
d1e0ba-  ( 284 )    -----------------------dg--tleIyLtwkn---ga---ishhp
d1g6za1  (  21 )    ------------------------ngavklyrirwlnyssrs---dtwep
d1pfba-  (  39 )    ------------------------g--vveYrVkwkgwnqry---ntwep
d2buda1  ( 405 )    -----------------------naaapdeYyvhyvglnrrl---dgwvg
d2dy7a1  ( 192 )    -------eegkvlektvpdlnnCke--nyEFlikwtdeshlh---ntwet
d2dy8a1  ( 300 )    -----------------------dgtsqlqYlvkwrrlnyde---atwen
d2fmma-  ( 130 )    ------------------------g--elmFlMkWkns--de---adlVp
d2huga2  (  18 )    -----------------------gkGkdveYlvrwkdgg-----dcewvk
d2m2la1  (  26 )    ------------------------g--ntsYlvKwknysskd---ntwet
d2xiwa-  (  27 )    -------------------------gknVkFlyndng-----kygaGnVd
d3m9qa-  (  45 )    -----------------------hglrfyeYkIhfqgwrpsy---dravr
d3svma-  (  72 )    ------------------------g--kvlykVrwkgytsdd---dtwep
d5afwa1  ( 290 )    atTTiyaveadgdpnagFekn--kepgeiQYlIkwkgwshih---ntwet
d5afwa2  ( 404 )    -----------------------ag--yPdYyCkwqglpyse---Cswed
d5in1a-  (  37 )    -----------------------ed--ewrYhVhYlgwsksw---dewVt
                                                bbbbbbb           bbb 

                             110       120       130 
d1e0ba-  ( 303 )    sti---Tnkk---CpqkMlqfyeshl       
d1g6za1  (  44 )    pen---ls-g---csavlaewkrrkrrlkgsns
d1pfba-  (  60 )    evn---Il-----drrlidiyeqtn        
d2buda1  ( 429 )    rhrisd-------naddlggitvlpapplapdq
d2dy7a1  ( 230 )    yes---iGq--vrGlkrldnYCkqfiie     
d2dy8a1  ( 324 )    Atd---ivkl---Apeqvkhfqnrenski---l
d2fmma-  ( 149 )    ake---Anvk---cpqvVisfyeerltwhsyps
d2huga2  (  40 )    Gv------hv---aedvakdyedgle------y
d2m2la1  (  47 )    edd---irtk---ygdlvddfeknqkk      
d2xiwa-  (  47 )    ekd---Apk----lld-Laraerek        
d3m9qa-  (  69 )    atvLlkdtee---nrqlqrelaeaakl      
d3svma-  (  93 )    eih---Led----ckevllefrkkia---enka
d5afwa1  ( 335 )    eet---LkqqnVrgmkkLdnykkkdqetkrw  
d5afwa2  ( 426 )    Gal---Iskk---fqacideyfsr         
d5in1a-  (  59 )    ndrLlkltde---nirkqqeleksq        
                                   aaaaaaaa
 

 

Domain IDNameFamilySourceDomainSTRING-DB
Heterochromatin protein 1, HP1Chromo domainFission yeast (Schizosaccharomyces pombe), SWI6 [TaxId: 4896]view
Histone methyltransferase clr4, chromo domainChromo domainFission yeast (Schizosaccharomyces pombe) [TaxId: 4896]view
Polycomb protein, PcChromo domainFruit fly (Drosophila melanogaster) [TaxId: 7227]view
Putative histone acetyltransferase MOFChromo barrel domainFruit fly (Drosophila melanogaster) [TaxId: 7227]view
ATP-dependent helicase CHD1 (Chromo domain protein 1)Chromo domainBaker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]view
ATP-dependent helicase CHD1 (Chromo domain protein 1)Chromo domainBaker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]view
Heterochromatin protein 1, HP1Chromo domainHuman (Homo sapiens) [TaxId: 9606]view
CpSRP43Chromo domainThale cress (Arabidopsis thaliana) [TaxId: 3702]view
automated matchesautomated matchesEntamoeba (Entamoeba histolytica) [TaxId: 5759]view
automated matchesHistone-like proteins from archaeaSulfolobus acidocaldarius [TaxId: 2285]view
automated matchesautomated matchesFruit fly (Drosophila melanogaster) [TaxId: 7227]view
automated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]view
automated matchesChromo domainHuman (Homo sapiens) [TaxId: 9606]view
automated matchesChromo domainHuman (Homo sapiens) [TaxId: 9606]view
automated matchesautomated matchesRice (Oryza sativa) [TaxId: 4530]view
Domain ID Name
d1wgsa11wgs A:8-127
d5e4xa-5e4x A:
d3mtsa13mts A:44-104
d3deoa13deo A:85-128
d4quca-4quc A:
d6ftoa-6fto A:
FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130
- - - Q V E N Y D S W E D - - - - - - - - - - - - - - - - - L V S S - - - I D T I E R K D - - - - - - - - - - - - - - - - - - - - - - - - - - - - D G - - T L E I Y L T W K N - - - G A - - - I S H H P S T I - - - T N K K - - - C P Q K M L Q F Y E S H L - - - - - - -
- - - - - - - - - S P K Q E E - - - - - - - - - - - - - - Y E V E R - - - I V D E K L D R - - - - - - - - - - - - - - - - - - - - - - - - - - - - - N G A V K L Y R I R W L N Y S S R S - - - D T W E P P E N - - - L S - G - - - C S A V L A E W K R R K R R L K G S N S
- - - - - - - - - D L V Y - - - - - - - - - - - - - - - - - A A E K - - - I I Q K R V K K - - - - - - - - - - - - - - - - - - - - - - - - - - - - - G - - V V E Y R V K W K G W N Q R Y - - - N T W E P E V N - - - I L - - - - - D R R L I D I Y E Q T N - - - - - - - -
D P L M Q K I D I S E N P D K I Y F I R R E - - - - D G T V H R G Q - - - V L Q S R - - T T E - - - - - - - - - - - - - - - - - - - - - - - - - - N A A A P D E Y Y V H Y V G L N R R L - - - D G W V G R H R I S D - - - - - - - N A D D L G G I T V L P A P P L A P D Q
- - - - - - - - - - - - - - - - - - - - - - - - Q P E D F H G I D I - - - V I N H R L K T S L - - - - - - - - - - E E G K V L E K T V P D L N N C K E - - N Y E F L I K W T D E S H L H - - - N T W E T Y E S - - - I G Q - - V R G L K R L D N Y C K Q F I I E - - - - -
- - - - - - - - - D E F E E F - - - - - - - - - - - - - - H V P E R - - - I I D S Q R A S L E - - - - - - - - - - - - - - - - - - - - - - - - - - D G T S Q L Q Y L V K W R R L N Y D E - - - A T W E N A T D - - - I V K L - - - A P E Q V K H F Q N R E N S K I - - - L
- - - E K - - - P R G F A R G - - - - - - - - - - - - - - L E P E R - - - I I G A T D S S - - - - - - - - - - - - - - - - - - - - - - - - - - - - - G - - E L M F L M K W K N S - - D E - - - A D L V P A K E - - - A N V K - - - C P Q V V I S F Y E E R L T W H S Y P S
- - - - - - - - - - - - - - - - - - - - - - - - - - - Q V F E Y A E V D E I V E K - - - - - R - - - - - - - - - - - - - - - - - - - - - - - - - - G K G K D V E Y L V R W K D G G - - - - - D C E W V K G V - - - - - - H V - - - A E D V A K D Y E D G L E - - - - - - Y
- - - - - - - - - - E V P Q T - - - - - - - - - - - - - - F E V E R - - - I V R K K I V H - - - - - - - - - - - - - - - - - - - - - - - - - - - - - G - - N T S Y L V K W K N Y S S K D - - - N T W E T E D D - - - I R T K - - - Y G D L V D D F E K N Q K K - - - - - -
- - - - - - - - - - - - - V K V - - - - - - K F L L N G E E K E V D T S K I R D V S R Q - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - G K N V K F L Y N D N G - - - - - K Y G A G N V D E K D - - - A P K - - - - L L D - L A R A E R E K - - - - - - - -
L R D E T P L F H - - - K G E I V L C Y E P D K S K A R V L Y T S K - - - V L N V F E R R N E - - - - - - - - - - - - - - - - - - - - - - - - - - H G L R F Y E Y K I H F Q G W R P S Y - - - D R A V R A T V L L K D T E E - - - N R Q L Q R E L A E A A K L - - - - - -
- - - - - - - - - D - V F - - - - - - - - - - - - - - - - - E V E K - - - I L D M K T E G - - - - - - - - - - - - - - - - - - - - - - - - - - - - - G - - K V L Y K V R W K G Y T S D D - - - D T W E P E I H - - - L E D - - - - C K E V L L E F R K K I A - - - E N K A
- - - - - - - - - - - - - - - - - - - - - - - - - - - E F E T I E R - - - F M D C R I G R K G A T G A T T T I Y A V E A D G D P N A G F E K N - - K E P G E I Q Y L I K W K G W S H I H - - - N T W E T E E T - - - L K Q Q N V R G M K K L D N Y K K K D Q E T K R W - -
Y N C Q Q E L T D D L H K Q Y - - - - - - - - - - - - - - Q I V E R - - - I I A H S N Q K S A - - - - - - - - - - - - - - - - - - - - - - - - - - A G - - Y P D Y Y C K W Q G L P Y S E - - - C S W E D G A L - - - I S K K - - - F Q A C I D E Y F S R - - - - - - - - -
- - - - - - S F K - - - E G E R V L A Y H G - - - - - P L L Y E A K - - - V Q K S E N K - - - - - - - - - - - - - - - - - - - - - - - - - - - - - E D - - E W R Y H V H Y L G W S K S W - - - D E W V T N D R L L K L T D E - - - N I R K Q Q E L E K S Q - - - - - - - -

 

 

 

 

 

Member Chain UniProtKB GO term
d1e0ba_ A P40381 GO:0005634
d1e0ba_ A P40381 GO:0005634
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in