PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1vema1  ( 418 )                      tpvmQtIvVknVp--ttigDtVyITGnraeLg
d2j43a1  (   5 )                      ashhLrhfktlpageslgsLgLwVwgdVdqps
d2j43a2  ( 112 )                    plkegyLrINYh-nqsghYdnlAVwTfkdVktpt
d2j73a-  (   5 )                    ft-eTtIvVhYh-rydgkydgwNLwIwPvepvsq
d3bmva2  ( 579 )                   ltgnqicVrFVVnnAs--TvygenVyLTGnvaeLg
d3njxa2  ( 251 )                 yvaasgrgkVagtAsgAd---ssmdwvVhWynd----
d5ghla-  ( 509 )                 ç-ttptaVaVtFdLt-At--TtygEnIyLVGsisqLg
d6j33a1  (  32 )    dvvvrlpdvavpgeavqAsarqAVIhLvdiag-dyatkNLylwnnetÇdA
                                         bbbbbbb          bbbbbb      

                             60        70        80        90        100 
d1vema1  ( 448 )    swdtkqyPi-qLyyds----hsnDwrgnvvLpa--ernIeFkAFIkskdg
d2j43a1  (  38 )    k----dwpngAittkakkdd--ygyyldvpLaakhrqqVsYLINNk----
d2j43a2  ( 145 )    t----dwp-nGldLs-hkgh--ygAyvdVplk-egAneIGFLILdksktg
d2j73a-  (  37 )    ------eG-kayqFt-gedd--fgkvAvVkLp-mdLtkVGIiVrln----
d3bmva2  ( 612 )    nwdts-kAiGpMfnqvvyq--yptWyydVsVPa--gttIqFkFIkkngn-
d3njxa2  ( 281 )    ------aaqywtyTss------sGsFtSpaMkp---gtYtMvYyQg----
d5ghla-  ( 542 )    dwets-dGi-aLsad-kytssdplwyvtvtLpA--gesFeYKFIriesdd
d6j33a1  (  88 )    Lsapvadwndvsttptgsdk--yGPyWvIpL-tkesgçINViVRdgt---
                                            bbbbbb       bbbbbbbb     

                             110       120       130       140    
d1vema1  ( 491 )    --tvkswQt-iqqswnpVpl----kttshtssw             
d2j43a1  (  79 )    -ag--enlS-kdqhisll----t-pknevwIdeny-hahayr    
d2j43a2  ( 186 )    dai---kvqpkdYlFkeL----d-nhtqVFVkdtdpkVynnpyyid
d2j73a-  (  72 )    ewq--akdvakdrfIeIk----d-gkaeVwIlqgveeIfyekp   
d3bmva2  ( 656 )    --ti-twEggsnhtyt-Vpss---stgtvivnWqq           
d3njxa2  ( 312 )    ---------eyaVatssvtVsagstttknIsgsvk           
d5ghla-  ( 587 )    --sv-ewEsdpnreyt-Vpqaçgtstatvtdtwr            
d6j33a1  ( 132 )    -----nklIdsdLrVsFs----dftdrTVsViagnsavyd      
                                bbbb           bbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1vema1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vema1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	beta-amylase	Starch-binding domain	Bacillus cereus [TaxId: 1396]	view
d2j43a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2j43a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pullulanase PulA	PUD-like	Streptococcus pyogenes [TaxId: 1314]	view
d2j43a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2j43a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pullulanase PulA	PUD-like	Streptococcus pyogenes [TaxId: 1314]	view
d2j73a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2j73a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pullulanase PulA	PUD-like	Thermotoga maritima [TaxId: 2336]	view
d3bmva2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3bmva2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cyclodextrin glycosyltransferase, C-terminal domain	Starch-binding domain	Thermoanaerobacterium thermosulfurigenes, EM1 [TaxId: 33950]	view
d3njxa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3njxa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Rhamnogalacturonase B, RhgB, middle domain	Rhamnogalacturonase B, RhgB, middle domain	Fungus (Aspergillus aculeatus) [TaxId: 5053]	view
d5ghla- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5ghla- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Glucoamylase, granular starch-binding domain	Starch-binding domain	Aspergillus niger [TaxId: 5061]	view
d6j33a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6j33a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Klebsiella pneumoniae [TaxId: 573]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	A	S	H	H	L	R	H	F	K	T	L	P	A	G	E	S	L	G	S	L	G	L	W	V	W	G	D	V	D	Q	P	S	K	-	-	-	-	D	W	P	N	G	A	I	T	T	K	A	K	K	D	D	-	-	Y	G	Y	Y	L	D	V	P	L	A	A	K	H	R	Q	Q	V	S	Y	L	I	N	N	K	-	-	-	-	-	A	G	-	-	E	N	L	S	-	K	D	Q	H	I	S	L	L	-	-	-	-	T	-	P	K	N	E	V	W	I	D	E	N	Y	-	H	A	H	A	Y	R	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	L	K	E	G	Y	L	R	I	N	Y	H	-	N	Q	S	G	H	Y	D	N	L	A	V	W	T	F	K	D	V	K	T	P	T	T	-	-	-	-	D	W	P	-	N	G	L	D	L	S	-	H	K	G	H	-	-	Y	G	A	Y	V	D	V	P	L	K	-	E	G	A	N	E	I	G	F	L	I	L	D	K	S	K	T	G	D	A	I	-	-	-	K	V	Q	P	K	D	Y	L	F	K	E	L	-	-	-	-	D	-	N	H	T	Q	V	F	V	K	D	T	D	P	K	V	Y	N	N	P	Y	Y	I	D
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	F	T	-	E	T	T	I	V	V	H	Y	H	-	R	Y	D	G	K	Y	D	G	W	N	L	W	I	W	P	V	E	P	V	S	Q	-	-	-	-	-	-	E	G	-	K	A	Y	Q	F	T	-	G	E	D	D	-	-	F	G	K	V	A	V	V	K	L	P	-	M	D	L	T	K	V	G	I	I	V	R	L	N	-	-	-	-	E	W	Q	-	-	A	K	D	V	A	K	D	R	F	I	E	I	K	-	-	-	-	D	-	G	K	A	E	V	W	I	L	Q	G	V	E	E	I	F	Y	E	K	P	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	T	G	N	Q	I	C	V	R	F	V	V	N	N	A	S	-	-	T	V	Y	G	E	N	V	Y	L	T	G	N	V	A	E	L	G	N	W	D	T	S	-	K	A	I	G	P	M	F	N	Q	V	V	Y	Q	-	-	Y	P	T	W	Y	Y	D	V	S	V	P	A	-	-	G	T	T	I	Q	F	K	F	I	K	K	N	G	N	-	-	-	T	I	-	T	W	E	G	G	S	N	H	T	Y	T	-	V	P	S	S	-	-	-	S	T	G	T	V	I	V	N	W	Q	Q	-	-	-	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	Y	V	A	A	S	G	R	G	K	V	A	G	T	A	S	G	A	D	-	-	-	S	S	M	D	W	V	V	H	W	Y	N	D	-	-	-	-	-	-	-	-	-	-	A	A	Q	Y	W	T	Y	T	S	S	-	-	-	-	-	-	S	G	S	F	T	S	P	A	M	K	P	-	-	-	G	T	Y	T	M	V	Y	Y	Q	G	-	-	-	-	-	-	-	-	-	-	-	-	-	E	Y	A	V	A	T	S	S	V	T	V	S	A	G	S	T	T	T	K	N	I	S	G	S	V	K	-	-	-	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	C	-	T	T	P	T	A	V	A	V	T	F	D	L	T	-	A	T	-	-	T	T	Y	G	E	N	I	Y	L	V	G	S	I	S	Q	L	G	D	W	E	T	S	-	D	G	I	-	A	L	S	A	D	-	K	Y	T	S	S	D	P	L	W	Y	V	T	V	T	L	P	A	-	-	G	E	S	F	E	Y	K	F	I	R	I	E	S	D	D	-	-	S	V	-	E	W	E	S	D	P	N	R	E	Y	T	-	V	P	Q	A	C	G	T	S	T	A	T	V	T	D	T	W	R	-	-	-	-	-	-	-	-	-	-	-	-
D	V	V	V	R	L	P	D	V	A	V	P	G	E	A	V	Q	A	S	A	R	Q	A	V	I	H	L	V	D	I	A	G	-	D	Y	A	T	K	N	L	Y	L	W	N	N	E	T	C	D	A	L	S	A	P	V	A	D	W	N	D	V	S	T	T	P	T	G	S	D	K	-	-	Y	G	P	Y	W	V	I	P	L	-	T	K	E	S	G	C	I	N	V	I	V	R	D	G	T	-	-	-	-	-	-	-	-	N	K	L	I	D	S	D	L	R	V	S	F	S	-	-	-	-	D	F	T	D	R	T	V	S	V	I	A	G	N	S	A	V	Y	D	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1vema1	A	P36924	GO:0000272
d1vema1	A	P36924	GO:0005976
d1vema1	A	P36924	GO:0016161
d1vema1	A	P36924	GO:0016798
d1vema1	A	P36924	GO:0046872
d1vema1	A	P36924	GO:0102229
d1vema1	A	P36924	GO:2001070
d2j43a1	A	Q8KLP1	GO:0005975
d2j43a1	A	Q8KLP1	GO:0030246
d2j43a1	A	Q8KLP1	GO:0005975
d2j43a1	A	Q8KLP1	GO:0030246
d2j43a2	A	Q8KLP1	GO:0005975
d2j43a2	A	Q8KLP1	GO:0030246
d2j43a2	A	Q8KLP1	GO:0005975
d2j43a2	A	Q8KLP1	GO:0030246
d3bmva2	A	P26827	GO:0003824
d3bmva2	A	P26827	GO:0004556
d3bmva2	A	P26827	GO:0005576
d3bmva2	A	P26827	GO:0005975
d3bmva2	A	P26827	GO:0016757
d3bmva2	A	P26827	GO:0030246
d3bmva2	A	P26827	GO:0043169
d3bmva2	A	P26827	GO:0043895
d3bmva2	A	P26827	GO:0046872
d3bmva2	A	P26827	GO:2001070
d3bmva2	A	P26827	GO:0003824
d3bmva2	A	P26827	GO:0004556
d3bmva2	A	P26827	GO:0005576
d3bmva2	A	P26827	GO:0005975
d3bmva2	A	P26827	GO:0016757
d3bmva2	A	P26827	GO:0030246
d3bmva2	A	P26827	GO:0043169
d3bmva2	A	P26827	GO:0043895
d3bmva2	A	P26827	GO:0046872
d3bmva2	A	P26827	GO:2001070
d3bmva2	A	P26827	GO:0003824
d3bmva2	A	P26827	GO:0004556
d3bmva2	A	P26827	GO:0005576
d3bmva2	A	P26827	GO:0005975
d3bmva2	A	P26827	GO:0016757
d3bmva2	A	P26827	GO:0030246
d3bmva2	A	P26827	GO:0043169
d3bmva2	A	P26827	GO:0043895
d3bmva2	A	P26827	GO:0046872
d3bmva2	A	P26827	GO:2001070

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	A	S	H	H	L	R	H	F	K	T	L	P	A	G	E	S	L	G	S	L	G	L	W	V	W	G	D	V	D	Q	P	S	K	-	-	-	-	D	W	P	N	G	A	I	T	T	K	A	K	K	D	D	-	-	Y	G	Y	Y	L	D	V	P	L	A	A	K	H	R	Q	Q	V	S	Y	L	I	N	N	K	-	-	-	-	-	A	G	-	-	E	N	L	S	-	K	D	Q	H	I	S	L	L	-	-	-	-	T	-	P	K	N	E	V	W	I	D	E	N	Y	-	H	A	H	A	Y	R	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	L	K	E	G	Y	L	R	I	N	Y	H	-	N	Q	S	G	H	Y	D	N	L	A	V	W	T	F	K	D	V	K	T	P	T	T	-	-	-	-	D	W	P	-	N	G	L	D	L	S	-	H	K	G	H	-	-	Y	G	A	Y	V	D	V	P	L	K	-	E	G	A	N	E	I	G	F	L	I	L	D	K	S	K	T	G	D	A	I	-	-	-	K	V	Q	P	K	D	Y	L	F	K	E	L	-	-	-	-	D	-	N	H	T	Q	V	F	V	K	D	T	D	P	K	V	Y	N	N	P	Y	Y	I	D
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									10										20										30										40										50										60										70										80										90										100										110										120										130										140
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									10										20										30										40										50										60										70										80										90										100										110										120										130										140
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