Motif    Start   End  Length   Motif
Motif1    23     25     3      [QLIVA][TRVA][IVFG]
Motif2    89     93     5      [IVYF][EGQTN][FIMYV][KLIV][AIVFY]


Motif marked on the alignment

                                ***                                   
d1vema  : ------------------TPVMQTIVVKNVP--TTIGDTVYITGNRAELGSWDTKQYPI-
d2j43a  : ----------------PLKEGYLRINYH-NQSGHYDNLAVWTFKDVKTPTT----DWP-N
d2j43a  : 
d2j73a  : ----------------FT-ETTIVVHYH-RYDGKYDGWNLWIWPVEPVSQ------EG-K
d3bmva  : ---------------LTGNQICVRFVVNNAS--TVYGENVYLTGNVAELGNWDTS-KAIG
d3njxa  : -------------YVAASGRGKVAGTASGAD---SSMDWVVHWYND----------AAQY
d5ghla  : -------------C-TTPTAVAVTFDLT-AT--TTYGENIYLVGSISQLGDWETS-DGI-
d6j33a  : DVVVRLPDVAVPGEAVQASARQAVIHLVDIAG-DYATKNLYLWNNETCDALSAPVADWND


                                      *****                           
d1vema  : QLYYDS----HSNDWRGNVVLPA--ERNIEFKAFIKSKDG--TVKSWQT-IQQSWNPVPL
d2j43a  : GLDLS-HKGH--YGAYVDVPLK-EGANEIGFLILDKSKTGDAI---KVQPKDYLFKEL--
d2j43a  : 
d2j73a  : AYQFT-GEDD--FGKVAVVKLP-MDLTKVGIIVRLN----EWQ--AKDVAKDRFIEIK--
d3bmva  : PMFNQVVYQ--YPTWYYDVSVPA--GTTIQFKFIKKNGN---TI-TWEGGSNHTYT-VPS
d3njxa  : WTYTSS------SGSFTSPAMKP---GTYTMVYYQG-------------EYAVATSSVTV
d5ghla  : ALSAD-KYTSSDPLWYVTVTLPA--GESFEYKFIRIESDD--SV-EWESDPNREYT-VPQ
d6j33a  : VSTTPTGSDK--YGPYWVIPL-TKESGCINVIVRDGT--------NKLIDSDLRVSFS--


                                                                      
d1vema  : ----KTTSHTSSW-------------
d2j43a  : --D-NHTQVFVKDTDPKVYNNPYYID
d2j43a  : 
d2j73a  : --D-GKAEVWILQGVEEIFYEKP---
d3bmva  : S---STGTVIVNWQQ-----------
d3njxa  : SAGSTTTKNISGSVK-----------
d5ghla  : ACGTSTATVTDTWR------------
d6j33a  : --DFTDRTVSVIAGNSAVYD------