PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1b4ra-  (   8 )                          Atlvgphg---plasgqlAaFhiaapl-
d1l0qa1  ( 302 )                   pvyPsAd--Fksnits-gyiflsepVqFtDlSk--
d1wgoa1  (   8 )    ceggvdmqqsqvqlqcpltpPrglqvsiqgeavavrpgedvlFvvrqeqG
                                            bb              bbbbb     

                             60        70        80        90        100 
d1b4ra-  (  32 )    --pvtatrWdFgDgsaevdaagp----aasHrYvlpgryhvtAvlalgag
d1l0qa1  ( 332 )    --dAtewkWdFgdg---ssskkq----nPthtYsetgiytVrLtVsnsng
d1wgoa1  (  58 )    dvlttkYqvdlgdgfkamyvnltltgepirhrYespgiyrvsvrAentAg
                         bbbbb        bb         bb       bbbbbbbb    

                             110       
d1b4ra-  (  76 )    sallgtdvqvea       
d1l0qa1  ( 373 )    tdsqistVnVvlkgsptps
d1wgoa1  ( 108 )    hdeavlfvqv         
                    bbbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1b4ra- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1b4ra- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Polycystein-1, PKD-1	PKD domain	Human (Homo sapiens) [TaxId: 9606]	view
d1l0qa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1l0qa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Surface layer protein	PKD domain	Methanosarcina mazei [TaxId: 2209]	view
d1wgoa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wgoa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	VPS10 domain-containing receptor SorCS2	PKD domain	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	A	T	L	V	G	P	H	G	-	-	-	P	L	A	S	G	Q	L	A	A	F	H	I	A	A	P	L	-	-	-	P	V	T	A	T	R	W	D	F	G	D	G	S	A	E	V	D	A	A	G	P	-	-	-	-	A	A	S	H	R	Y	V	L	P	G	R	Y	H	V	T	A	V	L	A	L	G	A	G	S	A	L	L	G	T	D	V	Q	V	E	A	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	V	Y	P	S	A	D	-	-	F	K	S	N	I	T	S	-	G	Y	I	F	L	S	E	P	V	Q	F	T	D	L	S	K	-	-	-	-	D	A	T	E	W	K	W	D	F	G	D	G	-	-	-	S	S	S	K	K	Q	-	-	-	-	N	P	T	H	T	Y	S	E	T	G	I	Y	T	V	R	L	T	V	S	N	S	N	G	T	D	S	Q	I	S	T	V	N	V	V	L	K	G	S	P	T	P	S
C	E	G	G	V	D	M	Q	Q	S	Q	V	Q	L	Q	C	P	L	T	P	P	R	G	L	Q	V	S	I	Q	G	E	A	V	A	V	R	P	G	E	D	V	L	F	V	V	R	Q	E	Q	G	D	V	L	T	T	K	Y	Q	V	D	L	G	D	G	F	K	A	M	Y	V	N	L	T	L	T	G	E	P	I	R	H	R	Y	E	S	P	G	I	Y	R	V	S	V	R	A	E	N	T	A	G	H	D	E	A	V	L	F	V	Q	V	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	V	Y	P	S	A	D	-	-	F	K	S	N	I	T	S	-	G	Y	I	F	L	S	E	P	V	Q	F	T	D	L	S	K	-	-	-	-	D	A	T	E	W	K	W	D	F	G	D	G	-	-	-	S	S	S	K	K	Q	-	-	-	-	N	P	T	H	T	Y	S	E	T	G	I	Y	T	V	R	L	T	V	S	N	S	N	G	T	D	S	Q	I	S	T	V	N	V	V	L	K	G	S	P	T	P	S
C	E	G	G	V	D	M	Q	Q	S	Q	V	Q	L	Q	C	P	L	T	P	P	R	G	L	Q	V	S	I	Q	G	E	A	V	A	V	R	P	G	E	D	V	L	F	V	V	R	Q	E	Q	G	D	V	L	T	T	K	Y	Q	V	D	L	G	D	G	F	K	A	M	Y	V	N	L	T	L	T	G	E	P	I	R	H	R	Y	E	S	P	G	I	Y	R	V	S	V	R	A	E	N	T	A	G	H	D	E	A	V	L	F	V	Q	V	-	-	-	-	-	-	-	-	-

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	A	T	L	V	G	P	H	G	-	-	-	P	L	A	S	G	Q	L	A	A	F	H	I	A	A	P	L	-	-	-	P	V	T	A	T	R	W	D	F	G	D	G	S	A	E	V	D	A	A	G	P	-	-	-	-	A	A	S	H	R	Y	V	L	P	G	R	Y	H	V	T	A	V	L	A	L	G	A	G	S	A	L	L	G	T	D	V	Q	V	E	A	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	V	Y	P	S	A	D	-	-	F	K	S	N	I	T	S	-	G	Y	I	F	L	S	E	P	V	Q	F	T	D	L	S	K	-	-	-	-	D	A	T	E	W	K	W	D	F	G	D	G	-	-	-	S	S	S	K	K	Q	-	-	-	-	N	P	T	H	T	Y	S	E	T	G	I	Y	T	V	R	L	T	V	S	N	S	N	G	T	D	S	Q	I	S	T	V	N	V	V	L	K	G	S	P	T	P	S
C	E	G	G	V	D	M	Q	Q	S	Q	V	Q	L	Q	C	P	L	T	P	P	R	G	L	Q	V	S	I	Q	G	E	A	V	A	V	R	P	G	E	D	V	L	F	V	V	R	Q	E	Q	G	D	V	L	T	T	K	Y	Q	V	D	L	G	D	G	F	K	A	M	Y	V	N	L	T	L	T	G	E	P	I	R	H	R	Y	E	S	P	G	I	Y	R	V	S	V	R	A	E	N	T	A	G	H	D	E	A	V	L	F	V	Q	V	-	-	-	-	-	-	-	-	-

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C	E	G	G	V	D	M	Q	Q	S	Q	V	Q	L	Q	C	P	L	T	P	P	R	G	L	Q	V	S	I	Q	G	E	A	V	A	V	R	P	G	E	D	V	L	F	V	V	R	Q	E	Q	G	D	V	L	T	T	K	Y	Q	V	D	L	G	D	G	F	K	A	M	Y	V	N	L	T	L	T	G	E	P	I	R	H	R	Y	E	S	P	G	I	Y	R	V	S	V	R	A	E	N	T	A	G	H	D	E	A	V	L	F	V	Q	V	-	-	-	-	-	-	-	-	-