PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ewqa1  ( 267 )    rg----------------qdtlfsvldeTrTaPGrrlLqswlrhplldrg
d1wb9a1  ( 270 )    daatrrnleitqnlaggaenTlasvldcTVTpMGsrmLkrwlhmpvrdtr
                                         aaaaa     aaaaaaaaaaaa     aa

                             60        70        80        90        100 
d1ewqa1  ( 301 )    plearldrvegFvregalregVRrlLyrLadLerlAtrLelgrAspkdLg
d1wb9a1  ( 320 )    vllerqqTigaLqd---ftagLqpvLrqVgdLerILarLalrtArPrDLa
                    aaaaaaaaaaa       aaaaaaaa     aaaaaaaaa     aaaaa

                             110       120       130       140       150 
d1ewqa1  ( 351 )    aLrrSLqILpeLrallge---------evgLpdLspLkeeLeaALvedpp
d1wb9a1  ( 367 )    rMrhAFqqLpeLraqLetVdsapVqalrekMgefaelrdlLerAIidtPp
                    aaaaaa  aaaaaaaa                  aaaaaaaaaa      

                             160       170       180       190       200 
d1ewqa1  ( 392 )    lkvseggLIregydpdLdalraahregvayfleleerErertgIptLkVg
d1wb9a1  ( 417 )    vlvrdGgVIasgyneeLdewraladgatdylerLevrErertgLdtLkVg
                                  aaaaaaaaaaaaaaaaaaaaaaaaaaaa     bbb

                             210       220       230       240       250 
d1ewqa1  ( 442 )    ynavfGyyLEVtrpyyervpkeYrpvqtlkdrqrytlpe-kekereVyrL
d1wb9a1  ( 467 )    fnavhgyyIqIsrgqshlApinYmrrqtlknaeryiipeLkeyedkVltS
                    bb   bbbbbbb           bbbbb   bbbbb     aaaaaaaaa

                             260       270       280       290       300 
d1ewqa1  ( 492 )    ealirrrEeeVFleVrerAkrqaeaLreAAriLaeLDVYAAlAevavryg
d1wb9a1  ( 517 )    kgkalalEkqLYeeLFdlLlphleaLqqSAsALAeLDVLVNlAeraytln
                    aaaaaaaaaaaaaaaaaaa   aaaaaaaaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1ewqa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ewqa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	DNA repair protein MutS, domain III	DNA repair protein MutS, domain III	Thermus aquaticus [TaxId: 271]		view
d1wb9a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wb9a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	DNA repair protein MutS, domain III	DNA repair protein MutS, domain III	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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R	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	D	T	L	F	S	V	L	D	E	T	R	T	A	P	G	R	R	L	L	Q	S	W	L	R	H	P	L	L	D	R	G	P	L	E	A	R	L	D	R	V	E	G	F	V	R	E	G	A	L	R	E	G	V	R	R	L	L	Y	R	L	A	D	L	E	R	L	A	T	R	L	E	L	G	R	A	S	P	K	D	L	G	A	L	R	R	S	L	Q	I	L	P	E	L	R	A	L	L	G	E	-	-	-	-	-	-	-	-	-	E	V	G	L	P	D	L	S	P	L	K	E	E	L	E	A	A	L	V	E	D	P	P	L	K	V	S	E	G	G	L	I	R	E	G	Y	D	P	D	L	D	A	L	R	A	A	H	R	E	G	V	A	Y	F	L	E	L	E	E	R	E	R	E	R	T	G	I	P	T	L	K	V	G	Y	N	A	V	F	G	Y	Y	L	E	V	T	R	P	Y	Y	E	R	V	P	K	E	Y	R	P	V	Q	T	L	K	D	R	Q	R	Y	T	L	P	E	-	K	E	K	E	R	E	V	Y	R	L	E	A	L	I	R	R	R	E	E	E	V	F	L	E	V	R	E	R	A	K	R	Q	A	E	A	L	R	E	A	A	R	I	L	A	E	L	D	V	Y	A	A	L	A	E	V	A	V	R	Y	G
D	A	A	T	R	R	N	L	E	I	T	Q	N	L	A	G	G	A	E	N	T	L	A	S	V	L	D	C	T	V	T	P	M	G	S	R	M	L	K	R	W	L	H	M	P	V	R	D	T	R	V	L	L	E	R	Q	Q	T	I	G	A	L	Q	D	-	-	-	F	T	A	G	L	Q	P	V	L	R	Q	V	G	D	L	E	R	I	L	A	R	L	A	L	R	T	A	R	P	R	D	L	A	R	M	R	H	A	F	Q	Q	L	P	E	L	R	A	Q	L	E	T	V	D	S	A	P	V	Q	A	L	R	E	K	M	G	E	F	A	E	L	R	D	L	L	E	R	A	I	I	D	T	P	P	V	L	V	R	D	G	G	V	I	A	S	G	Y	N	E	E	L	D	E	W	R	A	L	A	D	G	A	T	D	Y	L	E	R	L	E	V	R	E	R	E	R	T	G	L	D	T	L	K	V	G	F	N	A	V	H	G	Y	Y	I	Q	I	S	R	G	Q	S	H	L	A	P	I	N	Y	M	R	R	Q	T	L	K	N	A	E	R	Y	I	I	P	E	L	K	E	Y	E	D	K	V	L	T	S	K	G	K	A	L	A	L	E	K	Q	L	Y	E	E	L	F	D	L	L	L	P	H	L	E	A	L	Q	Q	S	A	S	A	L	A	E	L	D	V	L	V	N	L	A	E	R	A	Y	T	L	N

Member	Chain	UniProtKB	GO term
d1ewqa1	A	Q56215	GO:0003677
d1ewqa1	A	Q56215	GO:0003684
d1ewqa1	A	Q56215	GO:0003690
d1ewqa1	A	Q56215	GO:0005524
d1ewqa1	A	Q56215	GO:0006281
d1ewqa1	A	Q56215	GO:0006298
d1ewqa1	A	Q56215	GO:0030983
d1ewqa1	A	Q56215	GO:0140664
d1ewqa1	A	Q56215	GO:0003677
d1ewqa1	A	Q56215	GO:0003684
d1ewqa1	A	Q56215	GO:0003690
d1ewqa1	A	Q56215	GO:0005524
d1ewqa1	A	Q56215	GO:0006281
d1ewqa1	A	Q56215	GO:0006298
d1ewqa1	A	Q56215	GO:0030983
d1ewqa1	A	Q56215	GO:0140664
d1ewqa1	A	Q56215	GO:0003677
d1ewqa1	A	Q56215	GO:0003684
d1ewqa1	A	Q56215	GO:0003690
d1ewqa1	A	Q56215	GO:0005524
d1ewqa1	A	Q56215	GO:0006281
d1ewqa1	A	Q56215	GO:0006298
d1ewqa1	A	Q56215	GO:0030983
d1ewqa1	A	Q56215	GO:0140664
d1wb9a1	A	P23909	GO:0000018
d1wb9a1	A	P23909	GO:0003677
d1wb9a1	A	P23909	GO:0003684
d1wb9a1	A	P23909	GO:0005515
d1wb9a1	A	P23909	GO:0005524
d1wb9a1	A	P23909	GO:0005829
d1wb9a1	A	P23909	GO:0006281
d1wb9a1	A	P23909	GO:0006298
d1wb9a1	A	P23909	GO:0006974
d1wb9a1	A	P23909	GO:0008301
d1wb9a1	A	P23909	GO:0016887
d1wb9a1	A	P23909	GO:0030983
d1wb9a1	A	P23909	GO:0032136
d1wb9a1	A	P23909	GO:0032300
d1wb9a1	A	P23909	GO:0042802
d1wb9a1	A	P23909	GO:0043531
d1wb9a1	A	P23909	GO:0140664
d1wb9a1	A	P23909	GO:1990710
d1wb9a1	A	P23909	GO:0000018
d1wb9a1	A	P23909	GO:0003677
d1wb9a1	A	P23909	GO:0003684
d1wb9a1	A	P23909	GO:0005515
d1wb9a1	A	P23909	GO:0005524
d1wb9a1	A	P23909	GO:0005829
d1wb9a1	A	P23909	GO:0006281
d1wb9a1	A	P23909	GO:0006298
d1wb9a1	A	P23909	GO:0006974
d1wb9a1	A	P23909	GO:0008301
d1wb9a1	A	P23909	GO:0016887
d1wb9a1	A	P23909	GO:0030983
d1wb9a1	A	P23909	GO:0032136
d1wb9a1	A	P23909	GO:0032300
d1wb9a1	A	P23909	GO:0042802
d1wb9a1	A	P23909	GO:0043531
d1wb9a1	A	P23909	GO:0140664
d1wb9a1	A	P23909	GO:1990710
d1wb9a1	A	P23909	GO:0000018
d1wb9a1	A	P23909	GO:0003677
d1wb9a1	A	P23909	GO:0003684
d1wb9a1	A	P23909	GO:0005515
d1wb9a1	A	P23909	GO:0005524
d1wb9a1	A	P23909	GO:0005829
d1wb9a1	A	P23909	GO:0006281
d1wb9a1	A	P23909	GO:0006298
d1wb9a1	A	P23909	GO:0006974
d1wb9a1	A	P23909	GO:0008301
d1wb9a1	A	P23909	GO:0016887
d1wb9a1	A	P23909	GO:0030983
d1wb9a1	A	P23909	GO:0032136
d1wb9a1	A	P23909	GO:0032300
d1wb9a1	A	P23909	GO:0042802
d1wb9a1	A	P23909	GO:0043531
d1wb9a1	A	P23909	GO:0140664
d1wb9a1	A	P23909	GO:1990710

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D	A	A	T	R	R	N	L	E	I	T	Q	N	L	A	G	G	A	E	N	T	L	A	S	V	L	D	C	T	V	T	P	M	G	S	R	M	L	K	R	W	L	H	M	P	V	R	D	T	R	V	L	L	E	R	Q	Q	T	I	G	A	L	Q	D	-	-	-	F	T	A	G	L	Q	P	V	L	R	Q	V	G	D	L	E	R	I	L	A	R	L	A	L	R	T	A	R	P	R	D	L	A	R	M	R	H	A	F	Q	Q	L	P	E	L	R	A	Q	L	E	T	V	D	S	A	P	V	Q	A	L	R	E	K	M	G	E	F	A	E	L	R	D	L	L	E	R	A	I	I	D	T	P	P	V	L	V	R	D	G	G	V	I	A	S	G	Y	N	E	E	L	D	E	W	R	A	L	A	D	G	A	T	D	Y	L	E	R	L	E	V	R	E	R	E	R	T	G	L	D	T	L	K	V	G	F	N	A	V	H	G	Y	Y	I	Q	I	S	R	G	Q	S	H	L	A	P	I	N	Y	M	R	R	Q	T	L	K	N	A	E	R	Y	I	I	P	E	L	K	E	Y	E	D	K	V	L	T	S	K	G	K	A	L	A	L	E	K	Q	L	Y	E	E	L	F	D	L	L	L	P	H	L	E	A	L	Q	Q	S	A	S	A	L	A	E	L	D	V	L	V	N	L	A	E	R	A	Y	T	L	N

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D	A	A	T	R	R	N	L	E	I	T	Q	N	L	A	G	G	A	E	N	T	L	A	S	V	L	D	C	T	V	T	P	M	G	S	R	M	L	K	R	W	L	H	M	P	V	R	D	T	R	V	L	L	E	R	Q	Q	T	I	G	A	L	Q	D	-	-	-	F	T	A	G	L	Q	P	V	L	R	Q	V	G	D	L	E	R	I	L	A	R	L	A	L	R	T	A	R	P	R	D	L	A	R	M	R	H	A	F	Q	Q	L	P	E	L	R	A	Q	L	E	T	V	D	S	A	P	V	Q	A	L	R	E	K	M	G	E	F	A	E	L	R	D	L	L	E	R	A	I	I	D	T	P	P	V	L	V	R	D	G	G	V	I	A	S	G	Y	N	E	E	L	D	E	W	R	A	L	A	D	G	A	T	D	Y	L	E	R	L	E	V	R	E	R	E	R	T	G	L	D	T	L	K	V	G	F	N	A	V	H	G	Y	Y	I	Q	I	S	R	G	Q	S	H	L	A	P	I	N	Y	M	R	R	Q	T	L	K	N	A	E	R	Y	I	I	P	E	L	K	E	Y	E	D	K	V	L	T	S	K	G	K	A	L	A	L	E	K	Q	L	Y	E	E	L	F	D	L	L	L	P	H	L	E	A	L	Q	Q	S	A	S	A	L	A	E	L	D	V	L	V	N	L	A	E	R	A	Y	T	L	N

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