PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1utga-  (   1 )      gicprfahvienlLlgtpssYetslkefepddtmkdagmqmKkvlds-
d1zkra1  (   0 )    m-eicpavkrdvdlfltgtpdeyVeQvaqykalpvvlenarilKncvdak
d1zkra2  (  73 )    maetcpifydvffAVAnGnellLdlSLtkvnAtepertamkkiQdcyven
                         aaaaaaaaaaa   aaaaaaaaa     aaaaaaaaaaaaaa   

                             60        70   
d1utga-  (  48 )    lpqttrenimkltekivksplcm 
d1zkra1  (  49 )    mteedkenalslldkiytsplcvk
d1zkra2  ( 123 )    glis-rvldglvmttissskdcmg
                            aaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1utga- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1utga- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uteroglobin	Uteroglobin-like	Rabbit (Oryctolagus cuniculus) [TaxId: 9986]	view
d1zkra1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1zkra1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Allergen Fel d I-A chain	Uteroglobin-like	Cat (Felis catus) [TaxId: 9685]	view
d1zkra2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1zkra2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Allergen Fel d I-B chain	Uteroglobin-like	Cat (Felis catus) [TaxId: 9685]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	A	E	T	C	P	I	F	Y	D	V	F	F	A	V	A	N	G	N	E	L	L	L	D	L	S	L	T	K	V	N	A	T	E	P	E	R	T	A	M	K	K	I	Q	D	C	Y	V	E	N	G	L	I	S	-	R	V	L	D	G	L	V	M	T	T	I	S	S	S	K	D	C	M	G

Member	Chain	UniProtKB	GO term
d1utga_	A	P02779	GO:0005496
d1utga_	A	P02779	GO:0005576
d1utga_	A	P02779	GO:0005615
d1utga_	A	P02779	GO:0005737
d1utga_	A	P02779	GO:0007165
d1utga_	A	P02779	GO:0019834
d1zkra1	A	P30438	GO:0005496
d1zkra1	A	P30438	GO:0005576
d1zkra1	A	P30438	GO:0005615
d1zkra1	A	P30440	GO:0005496
d1zkra1	A	P30440	GO:0005576
d1zkra1	A	P30440	GO:0005615
d1zkra1	A	P30438	GO:0005496
d1zkra1	A	P30438	GO:0005576
d1zkra1	A	P30438	GO:0005615
d1zkra1	A	P30440	GO:0005496
d1zkra1	A	P30440	GO:0005576
d1zkra1	A	P30440	GO:0005615
d1zkra2	A	P30438	GO:0005496
d1zkra2	A	P30438	GO:0005576
d1zkra2	A	P30438	GO:0005615
d1zkra2	A	P30440	GO:0005496
d1zkra2	A	P30440	GO:0005576
d1zkra2	A	P30440	GO:0005615
d1zkra2	A	P30438	GO:0005496
d1zkra2	A	P30438	GO:0005576
d1zkra2	A	P30438	GO:0005615
d1zkra2	A	P30440	GO:0005496
d1zkra2	A	P30440	GO:0005576
d1zkra2	A	P30440	GO:0005615

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