Superfamily : 48150 [ DNA-glycosylase ]
Class : All alpha proteins
Fold : DNA-glycosylase
# of Members : 11
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1keaa-  (   3 )          datnkkrkvF-vstIltfWntdrr-dfpwrht-------rdpYv
d1mpga1  ( 100 )                     a----arpglr--Lpgcv-----------dAFe
d1muna-  (   1 )              mqasqF-saqVldwYdkyGrktlpWqid-------ktpyk
d1orna1  (   3 )              tqqiyC-l-eMamfp---AhceLv---h-------rnpfe
d1pu6a-  (   2 )              ldSfeI-Lkalksldllnap---awwwp-------nalFe
d1xg7a1  (   3 )           elv-iIkgIgiegAkeVEekVdrqfyALqyLfrhqdpemFIkL
d1xqoa-  (   2 )    aaesqlkrVietLrrlgieeVLklErr-DpqyraVçnVVkrhgetvGSrL
d2ofka-  (   3 )                     rCdwVs---dplyiaYHdnewGvpetds-kLFe
d2xhia2  ( 136 )                                                  dPie
d4aiaa1  (   1 )                     mneCAfgtkdpvylnyHdhvwGqplydskaLFk
d4e9ea-  ( 437 )                     kwtPprSpfnLvQEtLfh-----------dpWk
                                                                   aaa

                             60        70        80        90        100 
d1keaa-  (  38 )    ILITeILlrrtt--aghVkkiydkFfvkYk------------------cF
d1mpga1  ( 116 )    QgVrAILgqlvs--vamaa-LtarVaqlYGerl-----ddfpeyicfPtp
d1muna-  (  33 )    VWLSeVMlqqtq--vatVipyFerFmarFp------------------tV
d1orna1  (  33 )    LLIAVVLsaqct--dalVnVT--rLFekYr------------------tp
d1pu6a-  (  33 )    ALLGAVLtqnt---feaVl-SLenLknafiLen---------------dd
d1xg7a1  (  46 )    VIANSLVSyqltgrg-dWWweFAryFsg-rvd------------------
d1xqoa-  (  51 )    AMLNALISyrltgkgeeHWeyFGkyFsqleVi------------------
d2ofka-  (  34 )    mICLEGQqagls--witVLkkrenYracF----------------hqFdp
d2xhia2  ( 140 )    cLFsfICssnNn--iaritgMverLcqafGprliqldd---vtyhgfPsL
d4aiaa1  (  34 )    lLALESQhagls--wltILkkkeaYeeAF----------------ydFeP
d4e9ea-  ( 459 )    LLIATIFlnrts--gkmAipvLwkFLekyp------------------sA
                    aaaaaa        aaaaaa aaaaaaa                     a

                             110       120       130       140       150 
d1keaa-  (  68 )    edIlkt---pkseIakdIkeI-glsnqrAeqLkeLArvVindygG--rVp
d1mpga1  ( 159 )    qrLaaA---dpqaLkal--gM-p--lkrAeALihLAnAAle---------
d1muna-  (  63 )    tdLAnA---pldeVlhlWtgL-gyy-aRArnLHkAAqqVatlhgg--kFp
d1orna1  (  63 )    hdYiav---pleeLeqdIrsI-glyrnkA-nIq-LCamLid-yng--eVp
d1pu6a-  (  66 )    eiNLkIAy-ifskLa-cVrpS-gfynqKAkrLidLSgnIlkdfqsFenFk
d1xg7a1  (  78 )    ----si-w-aYgeFLpkSkNNrrlieaKlnrIvgfLstltldLegyYk-n
d1xqoa-  (  83 )    ----dLçr-dFlkYIetSpfLkigveaRkkrAlkAÇ-dyvPnLe-----d
d2ofka-  (  66 )    irIaamqeedVe-llq-ntgI-irhrgKIqAIIsNArawlaMeq-ngesF
d2xhia2  ( 185 )    qaLagp--eVeahLrkl--gL-g---yRAryVsaSAraIleeq-----gg
d4aiaa1  (  66 )    ekVAqMtaqdIdrLmt-fpnI-vhhrkKLeAIvnQAqGYlkIeq-aygsF
d4e9ea-  ( 489 )    evArta---dwrdVSelLkpL-glydlrAktIvkFSdeyltk--------
                    aaaa      aaaa           aaaaaaaaaaaaaaa          

                             160       170       180       190       200 
d1keaa-  ( 112 )    r--nrkaIldLpgVg------------kyTCaAVMClAfgk-------kA
d1mpga1  ( 192 )    -gtLpmtipg------------------dveqaMktLqt---------fp
d1muna-  ( 106 )    e--tfeeVaaLpgVg------------rstAGAILSLSlgk-------hf
d1orna1  ( 107 )    r--drdeLmkLpgVg------------rkTANvVVSvafgv-------pa
d1pu6a-  ( 116 )    qeVtrewLldqkgIg------------keSADAILCYACak-------ev
d1xg7a1  ( 126 )    MkmLWkaLik-mgs-e---dsktIVfTVKMFGYASRiAfsrfipYpmeIp
d1xqoa-  ( 122 )    LglTLrqLshiVgarr---eqktLVfTIKILNYAyMÇsrgvnrvLpfdIP
d2ofka-  ( 113 )    adfVwsfVdgqpqi-taasldkIptstpaSdaLAkaLkk-------rgFk
d2xhia2  ( 222 )    lawLqqLres------------------syeeAhkaLci---------Lp
d4aiaa1  ( 113 )    skfLWsyvngkpkdlqyehasdritvddtAtqLSkdLkq-------ygFk
d4e9ea-  ( 527 )    --------------------------------qwkyPie---------Lh
                        a                      aaaaaaaaaa             

                             210       220       230       240       250 
d1keaa-  ( 141 )    AMVdanFvrVInrYFGgsyenlnynh----kaLweLAetLVpg-------
d1mpga1  ( 214 )    gIgrwTAnyFALrGWqAkdvFLPdd------ylIkqrFp-----------
d1muna-  ( 135 )    pILngnVkrVLARCya---vsgwpgkkevenkLwslSeqVTpa-------
d1orna1  ( 136 )    IAVdthVerVSkRLg---Fcwds-------vlVEktLmkiIpk-------
d1pu6a-  ( 147 )    MVVd-ySylfLklgiie-----------dydeLqhfFekGVqenlnsAla
d1xg7a1  ( 173 )    IpedlrIksVTskltq--------------ekpt-fWm-iGqeSg-----
d1xqoa-  ( 169 )    IPVdyrVArLTAGLIdf--ppeeAlrryeaVQkiWdaVAreTg-----
d2ofka-  ( 156 )    fVgttiCYsFMqACGL----vnDHi------tgCfchp            
d2xhia2  ( 245 )    gVgtcVAdkICLmALdKpqAVPV-n------vhMWhIAqr---dyswhPt
d4aiaa1  ( 156 )    fLgpvtVFsFLeAAGL----YDAHL------kdCpSkpkh---n      
d4e9ea-  ( 536 )    gIgkyGnDSyrIFCvneWkqVhPed------hkLnkYHdw---Lwenhek
                        aaaaaaaaa                    aaaa             

                             260       270       280       290       300 
d1keaa-  ( 180 )    ---------gkCrdFNLGLmDFSaiicaprkPkcekc-gMsklcsyyek 
d1mpga1  ( 247 )    --------g----mtpaqIrrYAe-rwkp------------wrSyaLLhI
d1muna-  ( 175 )    ---------vGVerFNqAMmDLGamictrskPkcslc-pLqngciAaann
d1orna1  ( 172 )    ---------eewsiTHhrMifFGryhca----pcpsc-pLlhlcegkrm 
d1pu6a-  ( 188 )    lyentislAqLYArFH-GIvefskqkll                      
d1xg7a1  ( 204 )    ---------VPPLHIDSLIwpLlg------nadltpLdielrnkLmkLte
d1xqoa-  ( 212 )    ---------IPPLHLdTLLwlAGrAVL--ygenlhgVp-------keVia
d2ofka-                                                               
d2xhia2  ( 285 )    tSqakgpsp----qTnkeLgnfFrslwgp------------yAGwaQavl
d4aiaa1                                                               
d4e9ea-                                                               
                                   a   aaaa                           

                             310 
d1keaa-                        
d1mpga1  ( 272 )    wytegwqpdea
d1muna-  ( 215 )    swalypgkkpk
d1orna1                        
d1pu6a-                        
d1xg7a1  ( 239 )    lLgl       
d1xqoa-  ( 244 )    LFqwrggÇrpp
d2ofka-                        
d2xhia2  ( 319 )    fsadlrq    
d4aiaa1                        
d4e9ea-                        
                               

 

 

Domain IDNameFamilySourceDomainSTRING-DB
Thymine-DNA glycosylaseMismatch glycosylaseMethanobacterium thermoautotrophicum [TaxId: 145262]view
3-Methyladenine DNA glycosylase II (gene alkA or aidA)DNA repair glycosylase, 2 C-terminal domainsEscherichia coli [TaxId: 562]view
Catalytic domain of MutYMismatch glycosylaseEscherichia coli [TaxId: 562]view
Endonuclease IIIEndonuclease IIIEscherichia coli [TaxId: 562]view
3-Methyladenine DNA glycosylase III (MagIII)3-Methyladenine DNA glycosylase III (MagIII)Helicobacter pylori [TaxId: 210]view
Hypothetical protein PF0904AgoG-likePyrococcus furiosus [TaxId: 2261]view
8-oxoguanine DNA glycosylase, AgoGAgoG-likePyrobaculum aerophilum [TaxId: 13773]view
3-Methyladenine DNA glycosylase I (Tag)3-Methyladenine DNA glycosylase I (Tag)Salmonella typhi [TaxId: 601]view
automated matchesDNA repair glycosylase, 2 C-terminal domainsHuman (Homo sapiens) [TaxId: 9606]view
automated matchesautomated matchesStaphylococcus aureus [TaxId: 1280]view
automated matchesMismatch glycosylaseHuman (Homo sapiens) [TaxId: 9606]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310
- - - - - - D A T N K K R K V F - V S T I L T F W N T D R R - D F P W R H T - - - - - - - R D P Y V I L I T E I L L R R T T - - A G H V K K I Y D K F F V K Y K - - - - - - - - - - - - - - - - - - C F E D I L K T - - - P K S E I A K D I K E I - G L S N Q R A E Q L K E L A R V V I N D Y G G - - R V P R - - N R K A I L D L P G V G - - - - - - - - - - - - K Y T C A A V M C L A F G K - - - - - - - K A A M V D A N F V R V I N R Y F G G S Y E N L N Y N H - - - - K A L W E L A E T L V P G - - - - - - - - - - - - - - - - G K C R D F N L G L M D F S A I I C A P R K P K C E K C - G M S K L C S Y Y E K - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - A - - - - A R P G L R - - L P G C V - - - - - - - - - - - D A F E Q G V R A I L G Q L V S - - V A M A A - L T A R V A Q L Y G E R L - - - - - D D F P E Y I C F P T P Q R L A A A - - - D P Q A L K A L - - G M - P - - L K R A E A L I H L A N A A L E - - - - - - - - - - G T L P M T I P G - - - - - - - - - - - - - - - - - - D V E Q A M K T L Q T - - - - - - - - - F P G I G R W T A N Y F A L R G W Q A K D V F L P D D - - - - - - Y L I K Q R F P - - - - - - - - - - - - - - - - - - - G - - - - M T P A Q I R R Y A E - R W K P - - - - - - - - - - - - W R S Y A L L H I W Y T E G W Q P D E A
- - - - - - - - - - M Q A S Q F - S A Q V L D W Y D K Y G R K T L P W Q I D - - - - - - - K T P Y K V W L S E V M L Q Q T Q - - V A T V I P Y F E R F M A R F P - - - - - - - - - - - - - - - - - - T V T D L A N A - - - P L D E V L H L W T G L - G Y Y - A R A R N L H K A A Q Q V A T L H G G - - K F P E - - T F E E V A A L P G V G - - - - - - - - - - - - R S T A G A I L S L S L G K - - - - - - - H F P I L N G N V K R V L A R C Y A - - - V S G W P G K K E V E N K L W S L S E Q V T P A - - - - - - - - - - - - - - - - V G V E R F N Q A M M D L G A M I C T R S K P K C S L C - P L Q N G C I A A A N N S W A L Y P G K K P K
- - - - - - - - - - T Q Q I Y C - L - E M A M F P - - - A H C E L V - - - H - - - - - - - R N P F E L L I A V V L S A Q C T - - D A L V N V T - - R L F E K Y R - - - - - - - - - - - - - - - - - - T P H D Y I A V - - - P L E E L E Q D I R S I - G L Y R N K A - N I Q - L C A M L I D - Y N G - - E V P R - - D R D E L M K L P G V G - - - - - - - - - - - - R K T A N V V V S V A F G V - - - - - - - P A I A V D T H V E R V S K R L G - - - F C W D S - - - - - - - V L V E K T L M K I I P K - - - - - - - - - - - - - - - - E E W S I T H H R M I F F G R Y H C A - - - - P C P S C - P L L H L C E G K R M - - - - - - - - - - - -
- - - - - - - - - - L D S F E I - L K A L K S L D L L N A P - - - A W W W P - - - - - - - N A L F E A L L G A V L T Q N T - - - F E A V L - S L E N L K N A F I L E N - - - - - - - - - - - - - - - D D E I N L K I A Y - I F S K L A - C V R P S - G F Y N Q K A K R L I D L S G N I L K D F Q S F E N F K Q E V T R E W L L D Q K G I G - - - - - - - - - - - - K E S A D A I L C Y A C A K - - - - - - - E V M V V D - Y S Y L F L K L G I I E - - - - - - - - - - - D Y D E L Q H F F E K G V Q E N L N S A L A L Y E N T I S L A Q L Y A R F H - G I V E F S K Q K L L - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - E L V - I I K G I G I E G A K E V E E K V D R Q F Y A L Q Y L F R H Q D P E M F I K L V I A N S L V S Y Q L T G R G - D W W W E F A R Y F S G - R V D - - - - - - - - - - - - - - - - - - - - - - S I - W - A Y G E F L P K S K N N R R L I E A K L N R I V G F L S T L T L D L E G Y Y K - N M K M L W K A L I K - M G S - E - - - D S K T I V F T V K M F G Y A S R I A F S R F I P Y P M E I P I P E D L R I K S V T S K L T Q - - - - - - - - - - - - - - E K P T - F W M - I G Q E S G - - - - - - - - - - - - - - V P P L H I D S L I W P L L G - - - - - - N A D L T P L D I E L R N K L M K L T E L L G L - - - - - - -
A A E S Q L K R V I E T L R R L G I E E V L K L E R R - D P Q Y R A V C N V V K R H G E T V G S R L A M L N A L I S Y R L T G K G E E H W E Y F G K Y F S Q L E V I - - - - - - - - - - - - - - - - - - - - - - D L C R - D F L K Y I E T S P F L K I G V E A R K K R A L K A C - D Y V P N L E - - - - - D L G L T L R Q L S H I V G A R R - - - E Q K T L V F T I K I L N Y A Y M C S R G V N R V L P F D I P I P V D Y R V A R L T W C A G L I D F - - P P E E A L R R Y E A V Q K I W D A V A R E T G - - - - - - - - - - - - - - I P P L H L D T L L W L A G R A V L - - Y G E N L H G V P - - - - - - - K E V I A L F Q W R G G C R P P
- - - - - - - - - - - - - - - - - R C D W V S - - - D P L Y I A Y H D N E W G V P E T D S - K L F E M I C L E G Q Q A G L S - - W I T V L K K R E N Y R A C F - - - - - - - - - - - - - - - - H Q F D P I R I A A M Q E E D V E - L L Q - N T G I - I R H R G K I Q A I I S N A R A W L A M E Q - N G E S F A D F V W S F V D G Q P Q I - T A A S L D K I P T S T P A S D A L A K A L K K - - - - - - - R G F K F V G T T I C Y S F M Q A C G L - - - - V N D H I - - - - - - T G C F C H P - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - D P I E C L F S F I C S S N N N - - I A R I T G M V E R L C Q A F G P R L I Q L D D - - - V T Y H G F P S L Q A L A G P - - E V E A H L R K L - - G L - G - - - Y R A R Y V S A S A R A I L E E Q - - - - - G G L A W L Q Q L R E S - - - - - - - - - - - - - - - - - - S Y E E A H K A L C I - - - - - - - - - L P G V G T C V A D K I C L M A L D K P Q A V P V - N - - - - - - V H M W H I A Q R - - - D Y S W H P T T S Q A K G P S P - - - - Q T N K E L G N F F R S L W G P - - - - - - - - - - - - Y A G W A Q A V L F S A D L R Q - - - -
- - - - - - - - - - - - - - - - - M N E C A F G T K D P V Y L N Y H D H V W G Q P L Y D S K A L F K L L A L E S Q H A G L S - - W L T I L K K K E A Y E E A F - - - - - - - - - - - - - - - - Y D F E P E K V A Q M T A Q D I D R L M T - F P N I - V H H R K K L E A I V N Q A Q G Y L K I E Q - A Y G S F S K F L W S Y V N G K P K D L Q Y E H A S D R I T V D D T A T Q L S K D L K Q - - - - - - - Y G F K F L G P V T V F S F L E A A G L - - - - Y D A H L - - - - - - K D C P S K P K H - - - N - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - K W T P P R S P F N L V Q E T L F H - - - - - - - - - - - D P W K L L I A T I F L N R T S - - G K M A I P V L W K F L E K Y P - - - - - - - - - - - - - - - - - - S A E V A R T A - - - D W R D V S E L L K P L - G L Y D L R A K T I V K F S D E Y L T K - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Q W K Y P I E - - - - - - - - - L H G I G K Y G N D S Y R I F C V N E W K Q V H P E D - - - - - - H K L N K Y H D W - - - L W E N H E K - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

 

 

 

 

 

Member Chain UniProtKB GO term
d1keaa_ A P29588 GO:0000701
d1keaa_ A P29588 GO:0003824
d1keaa_ A P29588 GO:0006281
d1keaa_ A P29588 GO:0006284
d1keaa_ A P29588 GO:0006298
d1keaa_ A P29588 GO:0006950
d1keaa_ A P29588 GO:0016798
d1keaa_ A P29588 GO:0032357
d1keaa_ A P29588 GO:0034039
d1keaa_ A P29588 GO:0035485
d1keaa_ A P29588 GO:0046872
d1keaa_ A P29588 GO:0051539
d1keaa_ A P29588 GO:0141016
d1mpga1 A P04395 GO:0003824
d1mpga1 A P04395 GO:0003905
d1mpga1 A P04395 GO:0005515
d1mpga1 A P04395 GO:0005737
d1mpga1 A P04395 GO:0006281
d1mpga1 A P04395 GO:0006284
d1mpga1 A P04395 GO:0006285
d1mpga1 A P04395 GO:0006307
d1mpga1 A P04395 GO:0006950
d1mpga1 A P04395 GO:0006974
d1mpga1 A P04395 GO:0008725
d1mpga1 A P04395 GO:0016787
d1mpga1 A P04395 GO:0032131
d1mpga1 A P04395 GO:0032993
d1mpga1 A P04395 GO:0043916
d1mpga1 A P04395 GO:0052821
d1mpga1 A P04395 GO:0052822
d1mpga1 A P04395 GO:0003824
d1mpga1 A P04395 GO:0003905
d1mpga1 A P04395 GO:0005515
d1mpga1 A P04395 GO:0005737
d1mpga1 A P04395 GO:0006281
d1mpga1 A P04395 GO:0006284
d1mpga1 A P04395 GO:0006285
d1mpga1 A P04395 GO:0006307
d1mpga1 A P04395 GO:0006950
d1mpga1 A P04395 GO:0006974
d1mpga1 A P04395 GO:0008725
d1mpga1 A P04395 GO:0016787
d1mpga1 A P04395 GO:0032131
d1mpga1 A P04395 GO:0032993
d1mpga1 A P04395 GO:0043916
d1mpga1 A P04395 GO:0052821
d1mpga1 A P04395 GO:0052822
d1muna_ A P17802 GO:0003677
d1muna_ A P17802 GO:0003824
d1muna_ A P17802 GO:0006281
d1muna_ A P17802 GO:0006284
d1muna_ A P17802 GO:0016798
d1muna_ A P17802 GO:0019104
d1muna_ A P17802 GO:0051539
d1pu6a_ A O25323 GO:0003824
d1pu6a_ A O25323 GO:0004519
d1pu6a_ A O25323 GO:0006281
d1pu6a_ A O25323 GO:0006284
d1pu6a_ A O25323 GO:0046872
d1pu6a_ A O25323 GO:0051539
d1xqoa_ A Q8ZVK6 GO:0000702
d1xqoa_ A Q8ZVK6 GO:0003824
d1xqoa_ A Q8ZVK6 GO:0003906
d1xqoa_ A Q8ZVK6 GO:0006281
d1xqoa_ A Q8ZVK6 GO:0006284
d1xqoa_ A Q8ZVK6 GO:0016787
d1xqoa_ A Q8ZVK6 GO:0016799
d1xqoa_ A Q8ZVK6 GO:0016829
d1xqoa_ A Q8ZVK6 GO:0140078