PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3uswa-  ( 118 )    nFayLgkikpqqLAdfIinehpqtIAlILahMeapnaaeTlsyFpdemka
d4fhrb1  ( 115 )            dpvqlvnfLqsehpqtIAVVLSyldppvAAqILgaLpeelQt
                             aaaaaaaa    aaaaaaaa    aaaaaaaa       aa

                             60        70        80        90        100 
d3uswa-  ( 168 )    eIsirmanlgeispqvvkrvstvLenklvg---glravAeifnrlgqksa
d4fhrb1  ( 157 )    eVLkrIAlLertspevvkeiernLekkIsgfvGgidtAAeIMnnLdrtte
                    aaaaaa       aaaaaaaaaaaaaa       aaaaaaaaa   aaaa

                             110       120       130       140       150 
d3uswa-  ( 224 )    kttlariesvdnklagaIkemmftFedIvkLdnfAIreIlkvAdkkdLSl
d4fhrb1  ( 214 )    kkImdkLvqenpelAdeIrrrmfvFedIlkLddrsIqlVlreVdtrdLAl
                    aaaaaaaaaa aaaaaaaaaa   333333  aaaaaaaa    aaaaaa

                             160       170       180       190       200 
d3uswa-  ( 274 )    ALktstkdLtdkFlnnMssraaeqFveemqylgavkikdVdvAqrkIIei
d4fhrb1  ( 264 )    ALkgAsdeLkekIfkNmskraaalLkdeleymgpvrlkdVeeAqqkIini
                    a     aaaaaaaa    aaaaaaaaaaaaa     aaaaaaaaaaaaaa

                             210  
d3uswa-  ( 324 )    VqslqekgvIqt  
d4fhrb1  ( 314 )    IrrLeeageIviar
                    aaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3uswa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3uswa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Helicobacter pylori [TaxId: 210]		view
d4fhrb1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4fhrb1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	FliG	FliG	Thermotoga maritima [TaxId: 2336]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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N	F	A	Y	L	G	K	I	K	P	Q	Q	L	A	D	F	I	I	N	E	H	P	Q	T	I	A	L	I	L	A	H	M	E	A	P	N	A	A	E	T	L	S	Y	F	P	D	E	M	K	A	E	I	S	I	R	M	A	N	L	G	E	I	S	P	Q	V	V	K	R	V	S	T	V	L	E	N	K	L	V	G	-	-	-	G	L	R	A	V	A	E	I	F	N	R	L	G	Q	K	S	A	K	T	T	L	A	R	I	E	S	V	D	N	K	L	A	G	A	I	K	E	M	M	F	T	F	E	D	I	V	K	L	D	N	F	A	I	R	E	I	L	K	V	A	D	K	K	D	L	S	L	A	L	K	T	S	T	K	D	L	T	D	K	F	L	N	N	M	S	S	R	A	A	E	Q	F	V	E	E	M	Q	Y	L	G	A	V	K	I	K	D	V	D	V	A	Q	R	K	I	I	E	I	V	Q	S	L	Q	E	K	G	V	I	Q	T	-	-
-	-	-	-	-	-	-	-	D	P	V	Q	L	V	N	F	L	Q	S	E	H	P	Q	T	I	A	V	V	L	S	Y	L	D	P	P	V	A	A	Q	I	L	G	A	L	P	E	E	L	Q	T	E	V	L	K	R	I	A	L	L	E	R	T	S	P	E	V	V	K	E	I	E	R	N	L	E	K	K	I	S	G	F	V	G	G	I	D	T	A	A	E	I	M	N	N	L	D	R	T	T	E	K	K	I	M	D	K	L	V	Q	E	N	P	E	L	A	D	E	I	R	R	R	M	F	V	F	E	D	I	L	K	L	D	D	R	S	I	Q	L	V	L	R	E	V	D	T	R	D	L	A	L	A	L	K	G	A	S	D	E	L	K	E	K	I	F	K	N	M	S	K	R	A	A	A	L	L	K	D	E	L	E	Y	M	G	P	V	R	L	K	D	V	E	E	A	Q	Q	K	I	I	N	I	I	R	R	L	E	E	A	G	E	I	V	I	A	R

Member	Chain	UniProtKB	GO term

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N	F	A	Y	L	G	K	I	K	P	Q	Q	L	A	D	F	I	I	N	E	H	P	Q	T	I	A	L	I	L	A	H	M	E	A	P	N	A	A	E	T	L	S	Y	F	P	D	E	M	K	A	E	I	S	I	R	M	A	N	L	G	E	I	S	P	Q	V	V	K	R	V	S	T	V	L	E	N	K	L	V	G	-	-	-	G	L	R	A	V	A	E	I	F	N	R	L	G	Q	K	S	A	K	T	T	L	A	R	I	E	S	V	D	N	K	L	A	G	A	I	K	E	M	M	F	T	F	E	D	I	V	K	L	D	N	F	A	I	R	E	I	L	K	V	A	D	K	K	D	L	S	L	A	L	K	T	S	T	K	D	L	T	D	K	F	L	N	N	M	S	S	R	A	A	E	Q	F	V	E	E	M	Q	Y	L	G	A	V	K	I	K	D	V	D	V	A	Q	R	K	I	I	E	I	V	Q	S	L	Q	E	K	G	V	I	Q	T	-	-
-	-	-	-	-	-	-	-	D	P	V	Q	L	V	N	F	L	Q	S	E	H	P	Q	T	I	A	V	V	L	S	Y	L	D	P	P	V	A	A	Q	I	L	G	A	L	P	E	E	L	Q	T	E	V	L	K	R	I	A	L	L	E	R	T	S	P	E	V	V	K	E	I	E	R	N	L	E	K	K	I	S	G	F	V	G	G	I	D	T	A	A	E	I	M	N	N	L	D	R	T	T	E	K	K	I	M	D	K	L	V	Q	E	N	P	E	L	A	D	E	I	R	R	R	M	F	V	F	E	D	I	L	K	L	D	D	R	S	I	Q	L	V	L	R	E	V	D	T	R	D	L	A	L	A	L	K	G	A	S	D	E	L	K	E	K	I	F	K	N	M	S	K	R	A	A	A	L	L	K	D	E	L	E	Y	M	G	P	V	R	L	K	D	V	E	E	A	Q	Q	K	I	I	N	I	I	R	R	L	E	E	A	G	E	I	V	I	A	R

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N	F	A	Y	L	G	K	I	K	P	Q	Q	L	A	D	F	I	I	N	E	H	P	Q	T	I	A	L	I	L	A	H	M	E	A	P	N	A	A	E	T	L	S	Y	F	P	D	E	M	K	A	E	I	S	I	R	M	A	N	L	G	E	I	S	P	Q	V	V	K	R	V	S	T	V	L	E	N	K	L	V	G	-	-	-	G	L	R	A	V	A	E	I	F	N	R	L	G	Q	K	S	A	K	T	T	L	A	R	I	E	S	V	D	N	K	L	A	G	A	I	K	E	M	M	F	T	F	E	D	I	V	K	L	D	N	F	A	I	R	E	I	L	K	V	A	D	K	K	D	L	S	L	A	L	K	T	S	T	K	D	L	T	D	K	F	L	N	N	M	S	S	R	A	A	E	Q	F	V	E	E	M	Q	Y	L	G	A	V	K	I	K	D	V	D	V	A	Q	R	K	I	I	E	I	V	Q	S	L	Q	E	K	G	V	I	Q	T	-	-
-	-	-	-	-	-	-	-	D	P	V	Q	L	V	N	F	L	Q	S	E	H	P	Q	T	I	A	V	V	L	S	Y	L	D	P	P	V	A	A	Q	I	L	G	A	L	P	E	E	L	Q	T	E	V	L	K	R	I	A	L	L	E	R	T	S	P	E	V	V	K	E	I	E	R	N	L	E	K	K	I	S	G	F	V	G	G	I	D	T	A	A	E	I	M	N	N	L	D	R	T	T	E	K	K	I	M	D	K	L	V	Q	E	N	P	E	L	A	D	E	I	R	R	R	M	F	V	F	E	D	I	L	K	L	D	D	R	S	I	Q	L	V	L	R	E	V	D	T	R	D	L	A	L	A	L	K	G	A	S	D	E	L	K	E	K	I	F	K	N	M	S	K	R	A	A	A	L	L	K	D	E	L	E	Y	M	G	P	V	R	L	K	D	V	E	E	A	Q	Q	K	I	I	N	I	I	R	R	L	E	E	A	G	E	I	V	I	A	R

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N	F	A	Y	L	G	K	I	K	P	Q	Q	L	A	D	F	I	I	N	E	H	P	Q	T	I	A	L	I	L	A	H	M	E	A	P	N	A	A	E	T	L	S	Y	F	P	D	E	M	K	A	E	I	S	I	R	M	A	N	L	G	E	I	S	P	Q	V	V	K	R	V	S	T	V	L	E	N	K	L	V	G	-	-	-	G	L	R	A	V	A	E	I	F	N	R	L	G	Q	K	S	A	K	T	T	L	A	R	I	E	S	V	D	N	K	L	A	G	A	I	K	E	M	M	F	T	F	E	D	I	V	K	L	D	N	F	A	I	R	E	I	L	K	V	A	D	K	K	D	L	S	L	A	L	K	T	S	T	K	D	L	T	D	K	F	L	N	N	M	S	S	R	A	A	E	Q	F	V	E	E	M	Q	Y	L	G	A	V	K	I	K	D	V	D	V	A	Q	R	K	I	I	E	I	V	Q	S	L	Q	E	K	G	V	I	Q	T	-	-
-	-	-	-	-	-	-	-	D	P	V	Q	L	V	N	F	L	Q	S	E	H	P	Q	T	I	A	V	V	L	S	Y	L	D	P	P	V	A	A	Q	I	L	G	A	L	P	E	E	L	Q	T	E	V	L	K	R	I	A	L	L	E	R	T	S	P	E	V	V	K	E	I	E	R	N	L	E	K	K	I	S	G	F	V	G	G	I	D	T	A	A	E	I	M	N	N	L	D	R	T	T	E	K	K	I	M	D	K	L	V	Q	E	N	P	E	L	A	D	E	I	R	R	R	M	F	V	F	E	D	I	L	K	L	D	D	R	S	I	Q	L	V	L	R	E	V	D	T	R	D	L	A	L	A	L	K	G	A	S	D	E	L	K	E	K	I	F	K	N	M	S	K	R	A	A	A	L	L	K	D	E	L	E	Y	M	G	P	V	R	L	K	D	V	E	E	A	Q	Q	K	I	I	N	I	I	R	R	L	E	E	A	G	E	I	V	I	A	R